RNA id: TU484039


Basic Information

Item Value
RNA id TU484039
length 1107
RNA type TUCP
GC content 0.44
exon number 3
gene id LOC110524330
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 64701867 ~ 64810664 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTACACGCAACACCCGAAAGACTGAACACACAGTCTTTCGCATCATTAGCAAAGCGAAAAAGCATGTGAGTCAGTGTGACTGAGAAAAAGGGGGCATGCAGAAAGACCCATGTCTTGGTAATCTGTAACTTGCAATGTATTTGTCTTGCATGCCTCGCAAATTCAGGTAAGTGGCGTAGGCCATGAATACTCCACCAAAGTTAGCTACAGACTACTAACTTCTGGCATTGTCTGAATTCCCATCCACTCATAGGACAGCTAACTGGCAAATGTTATTGGCTGGCAATCTCAGCATTGAATTGTCCAGCCACATCTTATATGTCTGCATTATCAAATGCAAACCAAATTCAAATAGACCATATAAGTGCTGTAAACCATGCCATAAAACATAATGGACTTGTACTCCAAAATGTTCTGTCCTGGTAAGGATGCTAAGTCACTGCTTAGGAAAAGCCTGGATGTTTCGAGTGAAAGACTAGTCTGTCTTTAGCCCTAAATCATATCGAGAACATTCTGTCTGTATAACATAAGGTTATCTTCCCTTAACATCACTGTTGAAGCAAATAATAGGAAATTATGTGTCCCAACTTGTACGGTATACTTTCGACCTGAATAAAGAGATTACTAAATTATTGTGGAATACTGTTACAGTAAATGTGGGTGACTCTTTCCGCCATCCACCATTCCTTCCGTGTTTCTGACTTGTTGTCATCTTTCCCCTGTTCCTCCCTCAGTCCAACGCGCTGCTGGTGCGCGAGGTGGACGTGGAGAAGGTGTGTTCTTTTGAACAGCCCTACATCAGTGCAATAAAGATGCTGTGGACAGACCCTGGTATCCAGGAGGCCTATGACCGTAGACGTGAATATCAGCTCTCGGACTCCACCAAATACTATCTAAGCGATCTGGATCGTATTGCCGAACCAAACTATCTACCAACCCAACAAGATGTGCTTAGGGTTCGCATCCCCACCACAGGGATCATTGAATACCCTTTCGACTTGCAAAGCATCATTTTCAGCAGCGCCAGCCAGGGACAGACGGAGGTAGCTGCTGCTCGCTAGGAAAGAAACAAAGCCCTGATCCTCCTCTAATAACATGGATATAGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU484035 lncRNA downstream 155853 64568493 ~ 64570074 (-) True LOC110524326
TU483758 lncRNA downstream 212177 64513454 ~ 64513750 (-) True G427037
TU483754 lncRNA downstream 215877 64509775 ~ 64510050 (-) True G427033
TU483751 lncRNA downstream 216163 64509545 ~ 64509764 (-) True G427030
TU483744 lncRNA downstream 221432 64504107 ~ 64504495 (-) True G427023
TU484143 lncRNA upstream 46903 64779875 ~ 64780140 (-) True G427386
TU484732 lncRNA upstream 193298 64926270 ~ 64926746 (-) True G427909
TU484733 lncRNA upstream 194800 64927772 ~ 64928219 (-) True G427910
TU484731 lncRNA upstream 257816 64990788 ~ 64991018 (-) True LOC110524335
TU484729 lncRNA upstream 261133 64994105 ~ 64997116 (-) True G427906
XM_021603868.2 mRNA downstream 24532 64664327 ~ 64701395 (-) True LOC110524329
XM_021603869.2 mRNA downstream 24536 64664327 ~ 64701391 (-) False LOC110524329
XM_036978079.1 mRNA downstream 81853 64568484 ~ 64644074 (-) False LOC110524326
XM_036978080.1 mRNA downstream 81853 64568484 ~ 64644074 (-) False LOC110524326
XM_036978078.1 mRNA downstream 81854 64568484 ~ 64644073 (-) False LOC110524326
XM_021603875.2 mRNA upstream 170067 64903039 ~ 64911196 (-) False LOC110524332
XM_021603876.2 mRNA upstream 196872 64929844 ~ 64947418 (-) True LOC110524333
XM_036978085.1 mRNA upstream 206294 64939266 ~ 64982684 (-) False LOC110524334
XM_021603877.2 mRNA upstream 215094 64948066 ~ 64982684 (-) False LOC110524334
XM_021603878.2 mRNA upstream 215094 64948066 ~ 64982684 (-) False LOC110524334
TU484034 other downstream 19902 64701874 ~ 64706025 (-) False LOC110524330
TU484037 other downstream 157547 64566681 ~ 64568380 (-) True G427287
TU483573 other downstream 439568 64283968 ~ 64286359 (-) True LOC110522986
TU482381 other downstream 1422533 63300924 ~ 63303394 (-) True G425810
TU482441 other downstream 1465458 63259648 ~ 63260469 (-) True LOC110524282
TU484689 other upstream 172073 64905045 ~ 64910998 (-) True LOC110524332
TU484709 other upstream 266736 64999708 ~ 65011598 (-) False G427902
TU484971 other upstream 637144 65370116 ~ 65382590 (-) False G428132
TU486620 other upstream 2054079 66787051 ~ 66789836 (-) True LOC110524398
TU488974 other upstream 3077633 67810605 ~ 67816544 (-) False lrrc7

Expression Profile