RNA id: XM_036978086.1


Basic Information

Item Value
RNA id XM_036978086.1
length 3027
RNA type mRNA
GC content 0.48
exon number 16
gene id LOC110524335
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 64983341 ~ 64991018 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCGCGTTCACGTGAAGGGGGGGGGGATGATTCTAGAAGGGGTACCTGAACGTACCCTCTTACTTTCACCCCCATATTTTTACTCTGTGACTGCGGTCGATTTCCTGTTCTCTTTATCTGTTTGTCAAGACAACATTCATActaaaaaacataaaataatcACAAACAACAAGTTATATGTTGTGGAAGACAGATATTTATGAAATAAATGTTTTACTTCGGAGCCAAAGCTTTTGATTTGATGTTACTATGCATTTTCTAATTAGTGGTCAGATTCAAATTAGGAAAACGATGTCGAATTTCCAGTGTACACATTGTAGAGTATGATTGGTTTGAAGAATGGAGTGAAAAGAAATTAAACCAATTATAGTGGCCAGTAGGCGGGATTTCCGCTCTGATAATCAAAGTTAGCGGAAGCTATTCTTATGAAGCTAACCGCCTCATCTCGCGCTTTGGGAAGCTAGCTTTCCAGCTAGCAAGCGTAATCGTTTTGCAGGTTTCATGTCGACCTGAAAACGGTGAAGAAGCGACACATAAAGACACCCAGAGTTCGCTAAAGAAGAAAGTAAAGGCTGCACAGAAGAGCAGGACAATGCCGCACAATTTCCAACCCGGAGACCTGGTCTTCGCTAAAATGAAGGGGTACCCCCACTGGCCAGCCAGGATTGAGGATGTAGCAGATGGAGCAGTAAAACCCCCTCCAAATAAAGTCCCCATCTTCTTCTTTGGGACCCATGAAACAGCATTCCTTGCACCAAAGGACCTTTTTGCATATGACAAGTACAGCGAGCGCTATGGGAAACCTAATAAAAGGAAGGGCTTCAATGAGGGCTTGTGTGAAATCCAGAACAACCCTCACGCCTCATACAGTGCTCCTGCACCTGTCAGCTCGTCTGACAGTGAAGCCAATGACGGTGCAGCAGGAAGTGAGGCAGAGGATGACGAGGAAGCAGTGGTGCCCAGGAAAGCATATTCAGGAAGTGAAGTAAATTCTGACTCAGGAAGTGAGGATcgaggaggggtgaagaggaaGGCCCCTGCTGCCAAGCGGCCCCCTGTGAAGAAGACCCGGGGTTCGTCCAGTGAccgggatggagaggagagtggCTCACCCTCGGAGCCAGACCCATCCCCTTCTGACTCAGACTCTGGGAAGAACAGTGACCAGGACTTCACCCCAGAGAAGAAGGCAGCAGCAGGCCGTGGTGGCGCCGGGAAGAAGGCTGGAGGTGGCAAAGGGAAGAAGGTGGTGTCGTCGGACTCCGACTCTGGGTCTCAGTCAGACAAGAAGAAAGGGGGCAGTGATTCAGAGGATCAGAAGCCACGGCCTGCTCTGTCTGGATCAGAATCCCAGTCTGGCTCCAAATCCGACTCTGACTCAGAGCCACAGCCACCTCAACGGAAGGCTCCTCAAGCGCGCAAGAAAGAGAAGCCTCCACCAAAGCCTCGGGGTGGACGGAAACCCAAAGCTGCCCCGGTCAGAGCACCGGCATCTTCCTCTGACAGTGATAGCGACAGTGAGCCGGACCGAGTCAGCGACTGgaaaaagagagatgaagagCGTCGGAAAGAGCTGGAGGAACGGCGGAAGAAGGAGCAGGCAGAGGAGATCCTCAAGTAtcgggagagggagaaggaagaagagCAGAGAAAGAAGGACAAGGAGAAGGGAAAGAGCAGTGGTGAAAACAGTTCAGATGAGGGTGTAGATCACCCACTGAAGAAGTCCAAGAAACCCCCACCGCCCCCCATCCCCGCCCCCTCCGACTCTGACTCTGGACCTGAGGTGAAAGCATCTGCAAAGCGTTCAGACAACCAGAAGAAAGGGAgaacaaagaaagagagggatcATGGTAAAGGCAAAAAGGAGAAAGATGTGAAGGAAAAGCGAACCCAGCGGTCAGAGGAGAGGCCCCGAGTGAGGTCCAAGCCTGACAAGCCCAAACGCAAACCAGAGAGACCTCCAGAGAGGAAAGCAGAGAAGAAAAAAGAGCCAACTCCAGACGAAAAGTTGCAGAAGCTCCACGCTGACATCAAGTTTGCACTGAAAGTGGACAACCCAAATACTGCAATGGCGTTGTCTGTTCTGCAGGACATAGAGCGCTGTCTACAGGCCCTGGCGGAGCTGGAAGCTGTGCCGGTCACCAGCCACATCCTGCAGAAGAACTCAGATGTTATTGCCACGCTTAAAAAGATCCGTCGATACAAAGCAAGCAGTGACGTAATGGAAAAGGCCAGCCAGGTCTACAACAAATTAAAGGGGCAGTTTGTGGTCAAGTCTGAAATGCCAAGTAAACACAAAGCTGAGGGAAAGGAGCAGGAAGAGAATGGGAAGGAGACACCAAACACAGATGTAACACCTGTGAATGGGGAATCAGAAGTCCAGAAAAAGGAATGCACTGAGCTGGAGGATACCCCAAAGTCACCGGTCCAGGAAGTGAATGATGAGCATGTGGCGTCAAGCCCCAACAGAAACAGAACCGACAGCGATGGAGAGCTGAAGAACTCTGAAGAAAATGGAATACAATTGTTTACCACAGCTAAAAGGAAAGCTCACTAGTCTCGTGCCAGATACATGGCGCTCTGCAGACCACTTTGATGTTCGCCATTGTATTTTTCAATTTTTATAGGACACCTTGGCCCGTCCCCAATTCCTCCCCCTCAAGCTACCATGCTTTTTTTTCTGCCACGTTAACTCTAACTTTGGTCTTTCATACAGTATTTATAATGAGAGATTCCATTTTTAGCACTTCTAACAGGAAATCGAAGGGGGAGAGGAGTCTTGTTCTGCTTTGAAGTAACTGTACTGTCACGTTAGTCAAGGCATCTGTTGGCTTTGCTTGAGAATGATATTGAAGCCTACAGAACCTAGAAAAGGCTAATGGTGGATAAGTATGAGTCTGGTACTTTTTgtgagtttttatttttttatctggtCTGTTCTTATTAATCCAGTCGCATCATATAAATATTAAGCCAGTGAACGGAACCACATCACATGTTTTCCAATTAAGTTCCACCtgctttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU484733 lncRNA downstream 55122 64927772 ~ 64928219 (-) True G427910
TU484732 lncRNA downstream 56595 64926270 ~ 64926746 (-) True G427909
TU484143 lncRNA downstream 203201 64779875 ~ 64780140 (-) True G427386
TU484113 lncRNA downstream 207880 64718887 ~ 64775461 (-) True G427360
TU484035 lncRNA downstream 413267 64568493 ~ 64570074 (-) True LOC110524326
TU484729 lncRNA upstream 3098 64994105 ~ 64997116 (-) True G427906
TU484710 lncRNA upstream 19546 65010553 ~ 65011598 (-) True G427902
TU484776 lncRNA upstream 93252 65084259 ~ 65085437 (-) True G427950
TU484835 lncRNA upstream 190901 65181908 ~ 65183884 (-) True sema6bb
TU484862 lncRNA upstream 231390 65222397 ~ 65222600 (-) True G428035
XM_021603880.2 mRNA downstream 657 64948066 ~ 64982684 (-) False LOC110524334
XM_036978087.1 mRNA upstream 20632 65011639 ~ 65022443 (-) False LOC110524336
XM_021603888.2 mRNA upstream 20632 65011639 ~ 65022842 (-) True LOC110524336
XM_036978089.1 mRNA upstream 39472 65030479 ~ 65048467 (-) False LOC110524339
XM_021603895.2 mRNA upstream 39472 65030479 ~ 65051482 (-) False LOC110524339
XM_021603896.2 mRNA upstream 39472 65030479 ~ 65051482 (-) True LOC110524339
TU484689 other downstream 72343 64905045 ~ 64910998 (-) True LOC110524332
TU484039 other downstream 250369 64725927 ~ 64732972 (-) True LOC110524330
TU484034 other downstream 277316 64701874 ~ 64706025 (-) False LOC110524330
TU484037 other downstream 414961 64566681 ~ 64568380 (-) True G427287
TU483573 other downstream 696982 64283968 ~ 64286359 (-) True LOC110522986
TU484709 other upstream 8701 64999708 ~ 65011598 (-) False G427902
TU484971 other upstream 379109 65370116 ~ 65382590 (-) False G428132
TU486620 other upstream 1796044 66787051 ~ 66789836 (-) True LOC110524398
TU488974 other upstream 2819598 67810605 ~ 67816544 (-) False lrrc7
TU488969 other upstream 2820479 67811486 ~ 67818124 (-) True lrrc7

Expression Profile