RNA id: XM_021603891.2


Basic Information

Item Value
RNA id XM_021603891.2
length 2433
RNA type mRNA
GC content 0.47
exon number 12
gene id LOC110524337
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 64998569 ~ 65011606 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAATTTATCACTACTTCGTGGACAGACCCGTTTCCTCTTTCTTTCGTGTTTCCACTAGATAGCATAGCCACAAAGTCCAAATgtgctatattgtaaaaatttaTGAAAACAAAATTTGCTTTTTGATCTTAATTTACGGTTAGGCATAAGGTTATTTTCTTGTGAAAAACAGTAAACAATGAAGAAATTTTTCGAGGACATAAAGAAAGATATAAAATTCAAGTCAGCGGGGCCTGGAAAGAAACTCGCAGAAGGCGGCAGCTCCAAGCCCCGAGTGGTGCAGAACAGTGGCCCTGCCAGGCCCCATCATGCTGCTCCCACTGAAGGAGCTCAGAAGGCAGGGGCTGCAGCTATGGCCAGGATCGAGGGGCAACCACGCCCACGGGCACAAACCTCACAGGATGCCATCCGGCTCCAGGTGAAAAGAGAGCTTGAGGCAGAAGCTGCAGCAGTAGCAGCGACCGAGAAGGAAAAGATAACAGCTGTTGAGGGCTCCAGTGTTAAGGATCCGGCATTTCTCTCAGTAACAGGTGTGTATTTCACCTGCCCGCTTACTGGAGCCACCTTAactaagagcgagagagaagtgcACATTAAAGAGGCCATTTTCATGCGGTTTGAAGAGGACGCAGTGGAGGCTTCCATAATGATGGTTCATACCTTCAACAAGGACAGGGAGAAAGTCAAGGCTGCAGTGGACATCATAAGCAAGTACATTGAAAACATCTGTAAGAACCCCACAGAGGAGAAGTACAGGAAGATCAAACTCAGTAACAAGGTGTTCCAGgaGAAGGTGAAGACTGTGGAGGGCAGTCGGGAGTTCTTGCAGGCTGTGGGCTTTCAGAGCATCATGCTGGATGTGGAGGGACAGGAGGAGAGTGAAGAGTTCCTGGTGCTGATGGAGCATGACCCGGAGGCCCTGGAGGTGATGAAGGATAGTATGGACCGGCTGCAAAGGGGAGAGCCAGTCAGAGCCCAGCTGGACCACCAGCCCCAGACCTTCAGACCCTCCCCCAACGCCATGCGTTTCGAACTACCCCCAGAGTTCTACAACCTCACTGCAGAGGAGCTCAAGAGGGAGCAGCAGCAAAAGAGCGAGGCGGTGGAGAAGAACACCATGCTGCGTACCAAAGCCAtgcgggagagagaggagcagagggagaggaggaagtacAACTACACCCTGCTGAGAATACGACTGCCTGATGGAAACATACTGCAGGGCACCTTCCTGGCCTGGGACAAGGTGTCTGTGCTCTTCCAGTTTGTGCGGGACTCCCTGGTGGACGGCTGGCAGCCCTTTGAGCTGGTGGCGCCAGGAGGACACAAACTCCGGGAGGCCCAAGAGTTGGCCCTGAATGAATGTAGCCTGgtccCTGCGGTTCTGCTGACATTTTCTTGGGATGCCGCAGTGCAAGCAGACATTTCTGCTGCTCTCCTCAAGCCAGTGCTACTGAAGAATATTCAAACCCTTGGCTGAACTGTCCCTGCGTCTCCACCTCCAGGTTGGAGATGACACCTTCATCCCTAAACCACATTTCAAAGGCTGTAGAAATACACAACTAATCCTTTAAAGGAAACATAATGCCATGCAgtgttttttttgtattgtaCCTTGAAATGTAGGATGATCTGAAATGGCTCCCTTACTCCTACAGAGAGCTCAGCATGGTATGAGATCCTGTTGTCAGTGTCACCCTTCTGCTCCGCTTCAATGTGTATCCTGCTTACGCAACAAATACTGACATACAATACTGGCTTTACATATGAGCGAATGGGTGGTGGTGACCAGACTGGTTGTCAAGTGCTAAGGTTTCAGTTGCTGTTCTTGTGAGCCAGACAATGTATATCGGTTAAGCTATTTTATTTAAGAGAACTTGTAATATTCTATTTTGAACCTCACTAACACTAAGTTTACAGCAACAAGCTATACCTGTACCTTAAAAGTGAAGGTTACTGGACAGAGCTCCAGATGTTAGCTTTCTTTATTGAATAAGGGTTTTGTAAGTCATTCAATTGAGTAATTTCCTATTATATTTCTAAATTATCAATGTTATTTGATTTCAGCAGCATGGAAATCTGTGATTTTGGTTAgtttgtactgtatgtaaccaacaattttttttgttgctgcgGCTTATCCCAGGTGATGGCTGGAATGACAACCTACCTCTCCTCACAGCACGTCCACTGCTTCTGTGTGCGTTGAGGCATAACCTCCAATGTTTCAGTTCAGTCCAGACATGAACAGCAGCAATTAACAAATGTGCTAAGAAATGTTTTCCTACCCTTGTTTAAGAATAACTAGAAAATGAAGGTCATGCTCTGTCTAGGTATCAAAGCTCAGTCATGTTTTGTTGCTTTTAAACCTGCCTGTAATAAAGATGAAGGTTGCATCAAGATATTGCTGTATCCCCCCATAAAAAAAGTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU484265 lncRNA upstream 70342 64929111 ~ 64929324 (+) True G427492
TU484264 lncRNA upstream 70574 64928434 ~ 64929092 (+) True G427491
TU484263 lncRNA upstream 71877 64926912 ~ 64927789 (+) True G427490
TU483859 lncRNA upstream 276786 64711678 ~ 64722880 (+) True G427123
TU483895 lncRNA upstream 289896 64708978 ~ 64709770 (+) True G427157
TU484302 lncRNA downstream 36728 65048334 ~ 65048632 (+) True G427529
TU484304 lncRNA downstream 39135 65050741 ~ 65051118 (+) True G427531
TU484342 lncRNA downstream 102144 65113750 ~ 65128405 (+) True G427563
TU484405 lncRNA downstream 212546 65224152 ~ 65224364 (+) True G427626
TU484406 lncRNA downstream 215825 65227431 ~ 65227769 (+) True G427627
XM_036978081.1 mRNA upstream 156811 64811241 ~ 64842855 (+) False LOC110524331
XM_036978082.1 mRNA upstream 156811 64811242 ~ 64842855 (+) False LOC110524331
XM_036978083.1 mRNA upstream 156811 64830439 ~ 64842855 (+) False LOC110524331
XM_036978084.1 mRNA upstream 156811 64830440 ~ 64842855 (+) True LOC110524331
XM_036978075.1 mRNA upstream 431262 64520298 ~ 64568404 (+) True tle2a
XM_021603893.2 mRNA downstream 12838 65024444 ~ 65028828 (+) False LOC110524338
XR_002473578.2 mRNA downstream 12918 65024524 ~ 65028828 (+) False LOC110524338
XM_021603897.2 mRNA downstream 40674 65052280 ~ 65060054 (+) True LOC110524340
XM_036978090.1 mRNA downstream 72135 65083741 ~ 65090497 (+) False mpnd
XM_036978091.1 mRNA downstream 72135 65083741 ~ 65090497 (+) False mpnd
TU484247 other upstream 2528 64992101 ~ 64997138 (+) True G427476
TU483060 other upstream 755137 64243602 ~ 64244529 (+) True LOC110522985
TU483050 other upstream 820280 64177028 ~ 64179386 (+) False sac3d1
TU484227 other downstream 13109 65024715 ~ 65028702 (+) False LOC110524338
TU484228 other downstream 13109 65024715 ~ 65028702 (+) False LOC110524338
TU484229 other downstream 13109 65024715 ~ 65028702 (+) False LOC110524338
TU484230 other downstream 13109 65024715 ~ 65028702 (+) True LOC110524338
TU484533 other downstream 442250 65453856 ~ 65521380 (+) True G427747

Expression Profile