RNA id: XM_021603888.2


Basic Information

Item Value
RNA id XM_021603888.2
length 3769
RNA type mRNA
GC content 0.50
exon number 16
gene id LOC110524336
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 65011639 ~ 65022842 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGCGTTCTGGCCAATCAGCAAAGGATTCTGAGGACAGCGACACGCTCCCGCCAAATCTGACTGACGGGCGCGAGGCAGCAACAGGGTCCATGCAAAGGCAGTGTGTGGGAGATGCGGCTAGAATAAAATTAACTTAGTCTTAAAAGTAATAGAACCCAGTCATCGTTATATTTGCATGGTATTAGTGTTACTCTGGAAGACCTGTCAATATTGCTACTTCATATGGTTTTGTGTTATTGCAACGCTTTTCCGCACAAGGATATCAAAAGTGAGGGAAGTTCTCGGATGGTGATGCTGGCAGCGGCGGAAGATCCATCCGTGGACGGGCATTTAGCATCCACTCCACGGAGGGGAGGTATGGATGGCAAAGTCAAATCCAGCAATGCTAACAAGAAGCTTGTTCAGGCTCGTCTTCCATTCAAGCGTCTAAACCCAGAGCCCAAGGAGATCAGTGAGCCCAAAAGGACCTGCACCCTTTCCCGGCCTGGGCTCTCAGATGGGGAGAATGAATCCGATTGCTCCCCCCTACCTGTGCGCCATGGACCGGCCCTGGTTAACGGCCGTGGCCCCCTGGATGGATTCATGAGTCGCAGTACCCAAGCGTCCCCTGCCAAAAGCATAGTTATTGATCTCACTGAGGACTCCAATTCAACTGACCTTTTAAAGCAGCAACCTGCGACACCCATTGTTGTCTCGTGTCCTCTGACACAAAACAGCCACCTGAGCAAAACCCTAAGTGCTGTAACAGCCACCAAAACAGATCACACTGCCAAGACAGAGCCAATAGACTACAAGCTGGGGGATGAACagaaggatggggaggaggagaaggacagggGGGACACTGCATCCATCTCACAGCTAGACACCACACAGGGTTCTGAcacagaagaagaggaggaggatgaagaacaAGAGGAGGCTGATATGTCCAGTCATGGGAATGAGTCCATGCTTTCTCCTTCATCCACCAGCTCTCTGTCAGCGGCCGAGAGCTCCCCAGAGTCTGCTAAGACAGAGAACACTCCTACTGTCACAGAGCCAAATACCACCCCTAAAATAGAGCAGAAAACTGTGAAAAGAAGATCTTTAAAGAGTTTGCAGGAGCAAGAGGAGAGGCTACACCAGCGCAAAGACAGAGAGCGGCAGCGAGAGGAGGCTAAAGACGctaaagagaagaagaaagaggaagcTCGCAAACTGAAGGAGGAGCgggagaaggaaagaaaggagaaaaaagagaaagaagagCGTGAAAAAAGAGATAAaaaggagaaagaggaaaaggaaaAAGCAGAGAAATTAAGAGCGAAAGAGGAGCAACGCAAATCGAAGCAAGAGGCAAAACttgaagaaaagagaaagaaagaggaggaaaaaCGGTTGAAAGAAGAGAAGGATAGGCTCAAAGCAGAGAAAGCTGAGATCACACGATTTCTACAGAAACCCAAGACTCCCCAGCAGGCCACAAAGACCCTTGCGTCTGCCTGTGAAAAGTTTGCCCCGTTTGAGATAAAGGAGCACATGTGTCTGGCGCCGCTGACCCGAGTCCAATGTGCGGAGGCGGTCCTGGAGGAACTGGACAGGTATCTGGCTAAACCTGATGGAAGCCTGGATGGCCTGAGTGACTGGACCAAAAATAAGCCCCGCAGATCAGGCCAGACCAAGCCCAGAAGCACATACCCTATGAGGGAGTGTATGgcgatggtggaggtggtggagggacCCAAACCGGATGGTGTGCCTGACAGGCAGCACTACGGCCGCATGAAGCTCCTTCAGTTCCGTGAGAACTACCGGCCTGCCTACTGGGGCACGTGGAGAAAAAACAGCCCCCACATCTCCCCTCGCTGCCCTCTCAGACAGGACAAGGACCTGTTGGATTATGAGGTGGACAGTGATGAggagtgggaggaagaggagccgGGAGAGTCCCTGTCACACAGTGAAGGGGAGGATAATGATAATGATGGAGGTGaaaatgatgacgatgatgaggaTGGTTTCTTCGTACCACATGGATACCTATCAGACGGGGAGGGGGCATTGGAGGAAGAGGAGGGTGGCGACCCAGAGAAGCAGAAGGTGCGTCAGAAGCTGAAGGCCCGGGAGTGGGATGAGCTGATGGCCAAGAAGAAGGTGAAGGTGCTAGAGGCTGTGGTGAGAGGCTGTGTGTGGGAGGGACAGGGTCCCCATCTGGAGCTCTTGCAGCAGTTTGCGGTGTGCCTGCTGGAACCCCTGCCCAAGCCAGAGTCCTCCACCCCAGAGGACAACACACAGAAACTACAACAGAAACTACAAGAAGATGAGCAGCTGCTGTTCCAGTTGTTGCCCCTGCTACATGGAAATGTGAACAGTAATAAGGTGATCATCACAGAGTTCCAGGAGTTTTGTCGCCAGCAGTCGACCTCGCCTATCTCCAGCCCTCAGAACTCAGGAGACAACATCCCCACCAGGGTCCGTCTAAAGCGCCTTATCAAGGGGAATGCTGTGTATGAGAAGCGCTCAGCCTTCAGACGCTGCTGCTGGTACGTCAAATCAGACGTCCTGGCTCGCTTCATCCAGGAGGCCCTCCCTGTACCCTGCCAGTGGAACTACCTCACCTCAGGGACCCATGTACCCCGTGAAGAGGCCCCAGCGGCCACAGGCTCACAGGGCAACTCCCCAACCACCCCCCAGGCCTCCCACACGCCATCCTCCAAGACCCCCTCCTCCAACAAGAGGAAGAGTGCCGGCAGCATGTCCATCACCAAGTTCATGAGGAAGGCTGCCGACCCTGAGCAGGTGGAGGCGATGAAGACAGATGGGTTCCAAGCAGACACAGAGGAAGATGAGGATGAAGCAGACTGCGTCATAATCAGCACACAGAAAGGATCTTCCAGAAAAGATACCTCCCCCAAAGAGAACGAGAGCACAGAACAAATGGAGGTGACCCCCTCTGACACAGCTGCGTTCTTCTTGCCTCGGGCCACTCCCACCCTGGCCTAAGGACTGCCCCCTGACTCTGGGTGTGTGCGTTTGTCAGAAATAGAATCAGGTCTTCAATCAAGATAACACACTGGTAGTGGCACACATGCCACCCACACGGTATTACAACCCCACTTTGCTCCATTAAGTACCAGACAGTGCCTGTAAAAAGGAAAATGTCTGACAAACTCATTGGTGTATTTTGTTCCAATGTTAAACCATTCATTACTTGGTTCAGTTGGAATGTCAGACATGTTTATATGGATGTCTTTGCTTGGGGAGGAGTTGGATGGCTCAGACAGTCAAGGCTCTTCTACCACAGCTGATTGGGTGGACCAGTGCCCACTGAAGTAGTTGCTGTCCGCTTCACCGTAGGCCCAGTGTAACTTTTATAtgtatttgttttaaaaaaataaaaatacttgaACTGGTTGAATTCATTAAAAATAAGTAATGATTAAATGTACTGCACTTTTATATGCCCTGCCTTATCTGGATGCCTTTATCAACACGCCACCACTCATCCATCCTTTCAAGAAGTACTTCATGTTTCATTCAATATGGCAAGTGCTGTTTTTCAGGCTGCTAACGTAGTGCTTATTGTACTATTCTAAACCtcaatttttttgtttgttaataATGGTTGAGGTGGAATAGTAAATGGCTGTCCAATATTAAAAACTTTGCGGTTTGCCTTACATTTTTGTGGCAGAGAATGCTCTCCTGTCACAACTGTTGCAGTTTGCAGGTATGATTTAAGGTGTCTCAATTTCTTTAAATAAAGCATTATTTAAAAATGAA

Function

GO:

id name namespace
GO:0031497 chromatin assembly biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0006974 cellular response to DNA damage stimulus biological_process
GO:0033186 CAF-1 complex cellular_component

KEGG:

id description
K10750 CHAF1A; chromatin assembly factor 1 subunit A

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU484710 lncRNA downstream 41 65010553 ~ 65011598 (-) True G427902
TU484729 lncRNA downstream 14523 64994105 ~ 64997116 (-) True G427906
TU484731 lncRNA downstream 20621 64990788 ~ 64991018 (-) True LOC110524335
TU484733 lncRNA downstream 83420 64927772 ~ 64928219 (-) True G427910
TU484732 lncRNA downstream 84893 64926270 ~ 64926746 (-) True G427909
TU484776 lncRNA upstream 61417 65084259 ~ 65085437 (-) True G427950
TU484835 lncRNA upstream 159066 65181908 ~ 65183884 (-) True sema6bb
TU484862 lncRNA upstream 199555 65222397 ~ 65222600 (-) True G428035
TU484875 lncRNA upstream 229100 65251942 ~ 65252280 (-) True G428048
TU484885 lncRNA upstream 240311 65263153 ~ 65263382 (-) True G428058
XM_036978086.1 mRNA downstream 20632 64983341 ~ 64991007 (-) False LOC110524335
XM_021603886.2 mRNA downstream 20635 64983341 ~ 64991004 (-) False LOC110524335
XM_021603887.2 mRNA downstream 20638 64983341 ~ 64991001 (-) False LOC110524335
XM_021603884.2 mRNA downstream 28955 64948066 ~ 64982684 (-) False LOC110524334
XM_036978089.1 mRNA upstream 7637 65030479 ~ 65048467 (-) False LOC110524339
XM_021603895.2 mRNA upstream 7637 65030479 ~ 65051482 (-) False LOC110524339
XM_021603896.2 mRNA upstream 7637 65030479 ~ 65051482 (-) True LOC110524339
XM_021603904.2 mRNA upstream 37324 65060166 ~ 65083058 (-) False LOC110524344
XM_021603902.2 mRNA upstream 37324 65060166 ~ 65083747 (-) True LOC110524344
TU484709 other downstream 41 64999708 ~ 65011598 (-) False G427902
TU484689 other downstream 100641 64905045 ~ 64910998 (-) True LOC110524332
TU484039 other downstream 278667 64725927 ~ 64732972 (-) True LOC110524330
TU484034 other downstream 305614 64701874 ~ 64706025 (-) False LOC110524330
TU484037 other downstream 443259 64566681 ~ 64568380 (-) True G427287
TU484971 other upstream 347274 65370116 ~ 65382590 (-) False G428132
TU486620 other upstream 1764209 66787051 ~ 66789836 (-) True LOC110524398
TU488974 other upstream 2787763 67810605 ~ 67816544 (-) False lrrc7
TU488969 other upstream 2788644 67811486 ~ 67818124 (-) True lrrc7
TU489232 other upstream 3317362 68340204 ~ 68352745 (-) True bend5

Expression Profile