RNA id: XM_021603896.2


Basic Information

Item Value
RNA id XM_021603896.2
length 5658
RNA type mRNA
GC content 0.45
exon number 18
gene id LOC110524339
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 65030479 ~ 65051482 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAGAGTCCTTCCTCATCTCACTCAGGAAGGTACTGTAGCTATGACATGTGGGGACACACTAAGAAGCCCACCATTAAGCCATAAAATGGCCATCTGGAGAAAAGTGACCCTCTTGCTGTTTCTTACAGGAATGTTGGTGAAGCCTGGTCTGAGCACTGTGATCCTGGATCAGCCACCAAGGACAGTGGAAGTTCATCTTGGTTCCTCTCTTACCCTGAACTGCAGTTTTCTGCCCCAGACTCGTGTCACGGTGAACTGGTATTTCAGCCCAACTGGCCACTCAAGCTGCAGCTCCAATACACTGCTGAACAGCAGTACCCATTCGGCTGACAAAACTGGGAAGCTGGATGCTGGGGGTCATGTATCTAAAGAATCTAGAGAGAGTTGGTCCAGATTAATTCTTAAAGATGTCACACACAATAACAGTGGATGGTACTTTTGCCATGTCTCAGTAGAGATTCCCGTCCTTCAACAAGCATGTAGCAATGGAACTCAAGTTAATATATCGGACAACCAGATGAAAAGTACCACTTATACTCCATTGATGACAGAAAGTCCTATCTATTCGAATATGCCTCCACCAAGATCTGCAATAAAACAACCCTCTCCGCATCCAGGAATACAGATGGACAACCAGAAGTTTCCTTCTCCTTTAAAACACACCAGGACCCCAGCCACAGCCCATTACAGCAAACATGTCAGGACCCCAACTCCAGCCAGGACCCATGACAGCAAACATAGCCTAAAACCCTAAGACTTTTTATGATTCCAATTAATCATATTTCCTCTACTGAAACTATGTCAGCAAGTAATTTGTTATCTCGTGTGTTGTGAGTGAAGTCTGACTTGGTCCTATCCTGTCCTATTACATGAGCTATCACTTTAGTATGTTTTTTTTTCAGGGACTGCTGTTGATTACTTCTCCAGCAATTGGCATGCCATGGTAGCCTACTAAATTCTGAGAAATTAATATTGTGTAAATATTATTCTCAGGGTCATTTAATGTTGTCCAAGTTCTATAAAGCGTAATCTATCAATAAAGAAAATAAGTGCTATTTTCTGGAATTTACAGTATGTTGCATCAGTAGCCTTTGTAAAAAAAGACTGGGCAACACACTGTGGGCTTGAAGGAAATATCTACATCTGTTAATAGTGCATTAATGAAATTCCATATTTCAGTATTTTCTTGCAATTGTAGTGTCAAAATTGTGAACAAATACTATGTGACTGGCAATTGTGCTATACATGTATGCAAGGACAGAAACATACATCAAGTTCGTTTTAGACAAAGTCTTTAAAATGATAGCCTACTAGACAACCACTTCAAAGGTGTCATCCTAAAAACAGAGCCAATGTATCGGTCTAATGTATCAGTCAATCAACGTCCATCCTTCGAAAATAGAAAAACATGGTCACGTGATACCTTGCCCCATCTAGGTACTTGTGGTGCTTTCACGACAACTGGGAACTGTGGCCTTCAGGTCGGAAATATACAAATATGCCCGAGTTTCCGGCTTGGAATTCCGTGTTGGAAGATCATTAAAAAGATTCTGCCCAGTCAGAGTTCGTTTTTTCCTAGTTCTCTTGAATGCACTGTAGTAGGAAgtggagatttccgagttcccagttgtttcgAATGTGGCATTGGTGGGATTGGGATTATAGAGCTAACGTGCACACTAGCCAGCAAACGTTACAAGTGGAGCCGAAAGATAATACCGATGTCAAATGGAAGATACTCTGGATCAATTTCTAATGGCGTAGACTGAGAATAAAAATAACTGTTCCAGATGAGAGCCTCAGGACCAGCATAAAGATCCCCTGAATTGGGAAGTTTGAACTACCACGTCCTACAACAGTACCTGGGACAGTATGGATTCTCTCCTGAGCTACAGAGGAGGTAGCAGCAGCTGCAAGTGTTTATGTTGGAGGCTGATACCATCATAGCTATTGACCATCAGAACACTAATACTGGGAGTCTCTATAGAGACATGAACTGCTGACCTTGatctacagtgtgttattgtgtaagCAGGACTAAGCAGTGCTCCCACACACCCCCTCCCACCTGGGCACTAcgccatgtctcctctctctgctctcggtGTTTTCTGTGGATTgttccttcctctgtctctcagtgaatACAACACTCACAACTGTATCCCACGGAAGAGTGTCCTTTACCAGGACAATATGAAGCTGTTCAGAGAGGAAGGGATTTGTAACTACTCCACCATGTTGGTTCGAGAGGAtttgggcctgctgctgctcggGGCTCGAGAGGCTGTCTATGCCCTGGACATCAATGATATTTCCATCAAGAAGTCATGGGTATACTGGCGGGTCACCAAGGAGAAACAGATGGAGTGCACATACAAAGGGAAACATGCTGAAATCGAATGCCGTAACTACATCCGGACGCTGCATAAAGTGGATGATGGCAGAATGTATGTGTGCGGGACAAATGCTTTCAGCCCCACCTGTGATTACATGACGTATTCTGAAGGACAGCTGAGACGAGAGGAAGCGCAGGAGGAGGGAAAAGGGAAATGCCCCTTTGACCCCTTCCAGAGATACTCATCCATCATGGTCGGAAATGACCTGTACTCTGCTACCTCAATCAACTTCCTGGGCTCTGAGCCTGTTGTTCTCCGCAGCTCTTCCTCTGCTCTCCGCACCGAGTTCAAGAGCTCCTGGCTCAACGAACCCAACTTTGTGTACATGGACCTTGTCCCCGAGAGCAATAACAACCCAGAGGGCGATGATGATAAGGTCTACCTGTTCTTCAGCGAGAACGCCATGGAGTATGACTTCTACAACAAGCTCATGGTGTCACGAGTGGCTCGTGTATGCAAGGGGGATATGGGCGGCCAGCGGACGCTCCAGAGGAAGTGGACGTCGTTTCTGAAGGCTCGTCTGGACTGCTCTCTGCCAGAGTCCAGCCTGCCCTCCATTGTACAGGCTGTCTTCCTACTCAAAAATGATGACTGGAGCAAAAGTGTTTTCTACGCAGTGTTCACTCCCCAGTCGAGCTTGTCCGACATGTCTGCAGTGTGTGCGTACAGTGTGTCAGCTATCGGAGACGTGTTCAATAAGGGGAAGTTTAAGACACCAGTGACTGTGGAGACGTCCCATGTGAAGTGGGTAATGTACAGTGGAGAGGTGCCCACCCCCAGACCTGGAGCCTGCATTAACAATGCAGCACGGGCCCTTGGGATGGAGCGCTCCCTGGACCTGCCAGACAAGACCCTGCAGTTCATCAGGGACCGGCCCCTCATGGACGAGGCCGTGCGCCCTCTGACCGGGGGTCCGCTGCTGGTCAAAAAAGGTGCCATGTTCACGCGCCTGGTGGTGGACAACGTGCTAGctctggatggagagagatacgCAGTCATGTTCATCGGCACAGAGAACGGCTATGTGCAGAAGGCAGTGAACTATGCTGGGGAGATGTTCATCATTGAGGAAATACAGCTGTACCAGACCCCAGAGGCTATCAGGACGCTACGCCTATCCTCCAGCACGGGTCAGTTGTATGCAGGCTCAGATTTTGGAGCAGTACAGATGCCTCTGAGTGACTGTGGCCGCTATGAGTTGTGTCTGGACTGTGTCTTGGGCAGAGACCCTTACTGTGGATGGGACCTCTCCACTGGCATCTGCTCTGCTGTGGCCAGTTCATCCTCTGACACGAACATGATTCAAAGTCTAAAAGATGGTGATATATCAAAATGTCCAAAATCAGAGACTGTGAAGCCAGAGAACTACACCTTAGTCCCTGGGAACAACATCAAGCTGCCGTGCCATCCTGCCTCCAACCTGGCACAGGTACACTGGCTCTTCTTAGGGCAACAGCTGCATGCTGACGCTAAGTATTACATCTACAACGGAGGAATCCTTATTCTTAATGCCTCTGCCTCCGACGCGGGCCAGTACACCTGTGAGTCTGTAGAGCAGGTGAAAAGCAGACCACACACCAGGACTATGGCAGTCTATCAACTGCGGCCCCACACTAATgcagagggtgaggaggagacgaCGACAGAGTCCCCCTATAGCCACAATACCCCACTACCAAGGGTGCCACAGACTTTGGAGCCCCCGCTCCCTCCTGAGTCATGGAGTGTAGACAGCAGGGTGGTAGGCCTGCAGGTGGCGGTAGCGCTCCTCTCTCTGATGCTGCTTGGTCTAGTAGCCTGGAATCTATATAAAAGGAGCTTTAGAAACAGATCTTCAGAGAACTCAGGTGTGGGCCAGGTGAAAAGGCTGTCAGTTGACTACATTCAAAATAGGACTTCAGTGATTAAGTTGCTGGGAACTACACCCAGTCATAACGCAAACAATAACCATCACGCAGTCATAGCTTTCAAAGGGAATGGGAAGCACCACTTTTCTCCGGGAGGCAATATTTCCACTATGGATGGGTTGGGTTACATTGACAACGAGTCAGAGATCTGACCCTGAGTGTTAACCACTCTCTGGggtttgctctctttctctcaccaggCAGCTGATTTAGGACACTATGGCAATGTCAAGCTCTGTACATTGGACTTGCGATAGAGgggaatgttttatatttttctaGGAATTGTCCAGAAAGACATTTTCCCACCAGGTtgaatttattttatatagtcatgccataatacaaatatacagtgagctccaaaaatATTGTGCCCagtagaaattaatggtaaataatgcatTGTTGTGAGTAACTTATTGTAAATATGAATAGAATGTTTCTAAAAACGTTAATGTGGCtacagatagtcctgaatgaattgtgattAATTAGAAAGTTACAGATCAAATATCATACCCACCTCTCacaattacaataacaggggaggttagcatgatatttgtgcatctaactttctcactcataatTATTCACAatttcattcaggactatctgtaatcatgatagcatccacattaatggagAAGTGTTTAGAAgcatatttaattttttatttacaataagTGACTAGGATGACAAtatattatttaccattaatttctattgggcacaaaataatctgaaacactaccaaaacaaacagcaaatgcatccaacaagtttctAGAAAGGGAaagacctagtcagttgtacaacagaaatgtgtcttccgcatttaacccaacccttctgaatcagagaggtgcggtgGGCTGCCataaatcgacatccacgtcttcggcgcccggggaacactgggttaactgccttgctcaggggcagaacgactgtcacaagcttgatgtaataaTCATTGTGTGTTAAGAATATGGGATCAAATACtgtactactttaatacacaagtgaatttgtcccaatacttttggtcccctaaaatggggggtggaggtggaagagagagacactatgtacaaaaagttatgtaatttctaaacggttcaccccaGATGGATGACAATTACTCTCAAATTAAATCTGACATTCTGCACTTCAACCTCAGCcattgtatcatttaaaatccaaagtgctggagtgcaTAGCCAAAACAACAATGTgccactgtcccaatactgttggagctcactgtactGTGCTAAATATTTTGTACAGTTAAGGTATATTTCAAATATTTtgtattaaaggcccagtgcagtcaatgTGATTTT

Function

GO: NA

KEGG:

id description
K06521 SEMA4, CD100; semaphorin 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU484710 lncRNA downstream 18881 65010553 ~ 65011598 (-) True G427902
TU484729 lncRNA downstream 33363 64994105 ~ 64997116 (-) True G427906
TU484731 lncRNA downstream 39461 64990788 ~ 64991018 (-) True LOC110524335
TU484733 lncRNA downstream 102260 64927772 ~ 64928219 (-) True G427910
TU484732 lncRNA downstream 103733 64926270 ~ 64926746 (-) True G427909
TU484776 lncRNA upstream 32777 65084259 ~ 65085437 (-) True G427950
TU484835 lncRNA upstream 130426 65181908 ~ 65183884 (-) True sema6bb
TU484862 lncRNA upstream 170915 65222397 ~ 65222600 (-) True G428035
TU484875 lncRNA upstream 200460 65251942 ~ 65252280 (-) True G428048
TU484885 lncRNA upstream 211671 65263153 ~ 65263382 (-) True G428058
XM_021603888.2 mRNA downstream 7637 65011639 ~ 65022842 (-) True LOC110524336
XM_036978087.1 mRNA downstream 8036 65011639 ~ 65022443 (-) False LOC110524336
XM_036978086.1 mRNA downstream 39472 64983341 ~ 64991007 (-) False LOC110524335
XM_021603886.2 mRNA downstream 39475 64983341 ~ 64991004 (-) False LOC110524335
XM_021603887.2 mRNA downstream 39478 64983341 ~ 64991001 (-) False LOC110524335
XM_021603904.2 mRNA upstream 8684 65060166 ~ 65083058 (-) False LOC110524344
XM_021603902.2 mRNA upstream 8684 65060166 ~ 65083747 (-) True LOC110524344
XM_021603905.2 mRNA upstream 39698 65091180 ~ 65109379 (-) False LOC110524345
XM_021603906.2 mRNA upstream 39698 65091180 ~ 65109379 (-) True LOC110524345
NM_001199827.1 mRNA upstream 70342 65121824 ~ 65137960 (-) True rorca
TU484709 other downstream 18881 64999708 ~ 65011598 (-) False G427902
TU484689 other downstream 119481 64905045 ~ 64910998 (-) True LOC110524332
TU484039 other downstream 297507 64725927 ~ 64732972 (-) True LOC110524330
TU484034 other downstream 324454 64701874 ~ 64706025 (-) False LOC110524330
TU484037 other downstream 462099 64566681 ~ 64568380 (-) True G427287
TU484971 other upstream 318634 65370116 ~ 65382590 (-) False G428132
TU486620 other upstream 1735569 66787051 ~ 66789836 (-) True LOC110524398
TU488974 other upstream 2759123 67810605 ~ 67816544 (-) False lrrc7
TU488969 other upstream 2760004 67811486 ~ 67818124 (-) True lrrc7
TU489232 other upstream 3288722 68340204 ~ 68352745 (-) True bend5

Expression Profile