RNA id: XM_021603902.2


Basic Information

Item Value
RNA id XM_021603902.2
length 2133
RNA type mRNA
GC content 0.49
exon number 14
gene id LOC110524344
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 65060166 ~ 65083747 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCTACGGACAATTGTTTCCAGTCAAGAGAGGAACGCCAGATGATACTTAAGCACATAACAAAAGCTTCTCCAAATTATAGCTGGACGACCAACCAAACCTCGTGGCTTTTCTCTGACAGGGACTGTCGATATCTTATGTTATACATTTTTCTTGTTCACTTCAAGCCATAAGTCCACCCAGGTGTTGATAAACCACTTAACCTGGAGAGCGGGGAATCACGGTTGCCGTGCGTAAACTCTTCGTCGCGCTCGGCACTGATGGCGGCGACCAAGCGAGCTGGGCGACAGCGCGAACAGCTTCCACACTGCTACTACGAAGGATTTCTGGAAAAAAGGTCATTCGAAGACAAGGCATCTCGGCGACTATGGACATGCTTGTGTGGAAACATTCTTTTCTTCTACAACAACACCAATGACAATTATTATGTGGAGAAACTAGAGCTTCGTAGCCCCATCTCCTTGACTGATGACTGCAATCGGGACAGAAACCTGGAGGCAGCCAGACTCATCCTGCGTATGGAGGATGGGGAGATCAAAATCACTgccCCAAGTCTAGAGGCTCGAGAACTATGGAAAGGTTTCATCTACTCTGTAGTTGAGctgTCAGTGCCAAGCTCACTCAACCTGCTGCCAGGCCAGATCCACATGATGAGAGAAACGgtagagaccgagagggagagacTAAAGACCCTGTCCCCTACCCCTGCGGCAGCATCCAGCTCCAACCTTTACCTCAGCCTCATAGGGGACATGCCTGCGTGTTTTCAGCCCGTGTCTCGTACAGAGGCAGAGATGACTTTGGAGAGACACTCTGACTGTGGGAACCTGCTGATTCGGCCTAGCAGGGATGGCGCCTCATTGGCTGTCACCACTCGACAGGACCTCAATGGGGCTGTGTTCAGACACTATCGAGTGACCAGGAAACATGACGGAGGATACGCCATCGATGTAGATACTCCAATCTTCTGTGCCACACTGCATGATGTCATAAACTGTCTGGTGGACAAGACTAATGGAACTCTGACACCCTTCATTATGGAAGGACCGTACGAAGAGCGCATCACGTTTTTTCAGGCAAatgaggagaatggagagagtcTGCAGTGTGTCCCCAGTACTCCCATGCCCCCTGTGCCAGTCCCTGCTCTACCTCCCAAACCAGGTCCAAGAGGGCGTGTACCAACTCCAGAGCCTGAGTCAGATACAAGAGTGTGCCTTGACCTCAATGATACCCagaaagaaaagaaagacacTACTTTGCAGCCTGCTCACCTCTCTCAGACTCCTCCCACACGCTTTCGTCTGCCAATGATGCCCCGTCAGACCCCCCATTTGCCCCATCAAACATCTCTGCCAAGTGAAGTGCTGCTCAGCTCTGGACCTGAGAGGAAGGCCCTGATGCCACCACTGGTGCCTTCTGTTCGTACACCTCGTACCTCCCACTCGACCTCCACAGATACCCCTGACATCACTGTGACTTCTGTCCCACCACATGCTGTGGCTCAGACCATATCTGAGGAGCTCAAGTTGAAGTTGGAGAAGAGGCGGGCGCAATAACAGTAACCTCTCCTGACAGCTTAGTCAACCAGCAAGTGGAAAAGCCTGCTACAGCAATGGCTTCACAACAAAATGGGGACACTCAACATGTCACTTTCTCTGGTAGACAGAGACATGGACCGTGTTTCCCTCTGTCAGACTCTGCCTCTGGGCTACTCTGGCCGCCTCCTCCCCTGGGCCGGGTGCCTGGGTCTCTCCCTGTTCCTTCTCAGCTGGGCTGTGTATGCTCAGACTCTCTAAGATGAATGCCTTATCGATTGCTCCTTCCTGTATCGTTTCATCCAAACCAGACAATAGCAAATTTAACAGACTGTAAATCGGCATTTAATTGTCACATTCGCACCACGGTTGTTTTGTATATTTGCACATTTTTTGTATTAAATATAATCCAATAGACCTACAGTATCAATTCTAAACCTGTCAGTGTTTTTGTTTCTTTGTCGTTTTGACATGCTAAGGTATTCTATATTTATATTGATATCGCTATACATTTGTCTCAATTCTACAACAGACTTTTGTCAAAGGCAATGAAGCCAATGTCTCCTGAATGAAATAAAAGGAATCACTGGTATTGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU484710 lncRNA downstream 48568 65010553 ~ 65011598 (-) True G427902
TU484729 lncRNA downstream 63050 64994105 ~ 64997116 (-) True G427906
TU484731 lncRNA downstream 69148 64990788 ~ 64991018 (-) True LOC110524335
TU484733 lncRNA downstream 131947 64927772 ~ 64928219 (-) True G427910
TU484732 lncRNA downstream 133420 64926270 ~ 64926746 (-) True G427909
TU484776 lncRNA upstream 512 65084259 ~ 65085437 (-) True G427950
TU484835 lncRNA upstream 98161 65181908 ~ 65183884 (-) True sema6bb
TU484862 lncRNA upstream 138650 65222397 ~ 65222600 (-) True G428035
TU484875 lncRNA upstream 168195 65251942 ~ 65252280 (-) True G428048
TU484885 lncRNA upstream 179406 65263153 ~ 65263382 (-) True G428058
XM_021603895.2 mRNA downstream 8684 65030479 ~ 65051482 (-) False LOC110524339
XM_021603896.2 mRNA downstream 8684 65030479 ~ 65051482 (-) True LOC110524339
XM_036978089.1 mRNA downstream 11699 65030479 ~ 65048467 (-) False LOC110524339
XM_021603888.2 mRNA downstream 37324 65011639 ~ 65022842 (-) True LOC110524336
XM_036978087.1 mRNA downstream 37723 65011639 ~ 65022443 (-) False LOC110524336
XM_021603905.2 mRNA upstream 7433 65091180 ~ 65109379 (-) False LOC110524345
XM_021603906.2 mRNA upstream 7433 65091180 ~ 65109379 (-) True LOC110524345
NM_001199827.1 mRNA upstream 38077 65121824 ~ 65137960 (-) True rorca
XM_036978092.1 mRNA upstream 97940 65181687 ~ 65333174 (-) False sema6bb
XM_036978093.1 mRNA upstream 97940 65181687 ~ 65333174 (-) False sema6bb
TU484709 other downstream 48568 64999708 ~ 65011598 (-) False G427902
TU484689 other downstream 149168 64905045 ~ 64910998 (-) True LOC110524332
TU484039 other downstream 327194 64725927 ~ 64732972 (-) True LOC110524330
TU484034 other downstream 354141 64701874 ~ 64706025 (-) False LOC110524330
TU484037 other downstream 491786 64566681 ~ 64568380 (-) True G427287
TU484971 other upstream 286369 65370116 ~ 65382590 (-) False G428132
TU486620 other upstream 1703304 66787051 ~ 66789836 (-) True LOC110524398
TU488974 other upstream 2726858 67810605 ~ 67816544 (-) False lrrc7
TU488969 other upstream 2727739 67811486 ~ 67818124 (-) True lrrc7
TU489232 other upstream 3256457 68340204 ~ 68352745 (-) True bend5

Expression Profile