RNA id: XM_021603905.2


Basic Information

Item Value
RNA id XM_021603905.2
length 3880
RNA type mRNA
GC content 0.45
exon number 10
gene id LOC110524345
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 65091180 ~ 65109379 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGGGATTAACCGCTTGGTGCAATTTTGCAAAAGTGTACACTGTGTGGATATGCTCATAGCTACGTATTACTAGATGCTTTCAAGACCTATCTACACTTATAGAGATCTGCGTGCTTGTACAACCGCGGTTCACGTGAACCGCATGAAATCCTCGTAGACGTGGTCAGCAATCAGATATCTGACTGAACGACGGTAGCGCAATCGTATGACCACGGCGTACTAGTTAACAATTTTGCGTGATAGATAGTTATTCTCAACTTTAATTTACTGCAAAAGTGAAACAGTCCGGCTCCAAGATGTCAGTAGCGGGCTTCAAGAAGCAGTTTTATAAAGCCAGCCAGATGGTCAGTGAGAAGGTCGGCGGTGCAGAGGGAACGAAACTGGATGAAGACTTCAAAGATTTGGAAAGGAAAGTAGATGTGACCAGCAAGGCTGTGGTGGAAGTCATATCTAAAACCTCAGAGTACCTGCAGCCTAACCCAGcGTCGCGGGCGAAGCTGTCTATGTTGAACACTGTGTCTAAGATCAGAGGCCAGGTGAAGAACCCGGGCTATCCCCAAGCTGAGGGCCTGCTGGGAGAGTGTATGGTCAAGTACGGCCGGGACCTAGGGGAGGAAACCAACTTCGGTGGGGCTCTAGTAGACGCGGGGGAGACCATGAAGAGGCTGGCGGAGGTGAAGGACTCTTTAGACATCGACGTCAAACAGAACTTCATTGATCCATTACAAAACCTGTCTGACAAGGACCTCCGAGAGATACAGCACCATCTGAAGAAGCTGGAGGGAAGGCGTCTGGACTACGACTATAAGAAGAAGCGCCAAGGGAAAATACCAGATGAGGAGCTGAGACAGGCACTGGAGAAGTTCCACGAGTCTAAAGAGGTGGCCGAGATCAGCATGTACAACATACTGGAGACTGACaTAGAGCAGGTGAGCCAGCTGTCGTCTCTGGTGGAGTCCCAGCTGCAGTACCACAGACAGGCCACACAGATCCTGGACGAGCTCTCGGACAAACTGAGGGACAGGATGAACGAGGCCCAGAACCGACCACGCCGCGAGTATACGCCCAAGCCCAAACCCATCTTTGACTTTGGAGAATGTGACAACCAATCAACCAATGGTGGCTACACGACCTCCGTTGCCACACCATCCTCCCGCAACTCAGAGTTACACTTCCTCCACGCCAGATTGTCATTTCAGAAAACCAGATTCTCAGAACAGCCGTCCTGTAAGGCCCTGTTTGACTTTGACCcagagaacgagggagagctgGGCTTCAAGGAGGGCGACATCATCACCCTGACCAATCAGATCGACGAGAACTGGTATGAGGGCATGCTGCATGGTCAATCAGGATTCTTCCCTCTCAACTACGTGGAAATCGTCGTCCCCCTGCCACATTAAGGAGTGCTGTACAGAGTACATGAGAGAGATAATGGGAacgggagagtgagggagggaatgaggagcCAGTTAACAGATTATAGAGTCTTTGTCCTCATCTTTACCATCATCGCCATCATCACAGATGTACTTGTACTCTTTGTCACTTTGTCATCTTGACGTTTGAAGGAAGGAAATTGGAAGATGGTGGTTTCTCGCATTCCAgttctgagaaagagagatttGAATATGACCCCCGCTGCCCCCCAAGCAAAAATAAATacggacagacggacacagaCATGAAGAACCGAACTAAACCAGACTTAATTTTTTAAAGTAATGTTTTCTGTCAACCACAGATATCCCAATAGAAAGGGAAGTTTCAAATGAAATGAATTTAGAATTGAAATGGTCAAAATCAATTTATTTAACGTTAAATGACATACAGATAAGCAGCAGAATACATTTTACATCGGCAGTTTAGCTGGTTCTGACTCTGTAAAAACTGTACAACTTGTAAAGCCTTATTTTCATAACTACAGACATTTTAAAAGTAATTTGTCACATCCAAAGTTTCTGTAGGTCCCACATTTCAGTATGGACTCTGGTGAATACTTGCCTTATTTCCAAGGCAAGTATGTCAGACACACTGCAACTGCACAGCCTTTCCAAATGATGGAGTCTGACTGGACAACGTCTCTAGGAGCCCCCTGCCGGCCAAGCTTAGACAACCACTCCCCTCCTCAGTAAACAACTACAGTAATGCCTTGTAGCTATGATCCATCTACAGTCAGTAGATTTACAACGCTATGTACATCCTGTATGCCTGAGCCACAGGAGAGCTTGAAGGGCCTCAGACATTGTTTAGTTTTGCAATGGTGTGTATTTGATTTGTTTTGGTTTCAGccttgtttattgttttttaatGTACAGCTAAACTGTTAAattgcaccttggtcctccaaTGAGATTGTTGCTGTACGTATGAGAGCCTGTACGTTTTGTTTAGTTATAGGCCTCTACTGAGAGGGTGTTCAAACCCAGACAGCCAGAGACTGAAGCCCCTGAGGAGAACACTAGACCCAAAGTCAAACACTAACATTTATAAGAAACCGCTTTCCCCATTGATGGGCTACTGCACATTTAGTGGCGTTATCAACATACGAAGCCTGTGTGTTTTACTTTTCTTCACTGTCTAATCATCTGTTCAATAGAGGAAACACATGCCACATAGAATAGAGTACATGGTGTGTTAACCATGATATGGTGTTTGGTTTTAGCTGTCATAGTACCCGTCTGTCCGTCCTAGTGCCTCCATAAGCGACAACGCTGCTGGCGgcgttgtgtgtgtgactgaacaTCTTTTGGATCAGTAAATCCCATTCATTCACGTCAGTCACTTTCTTCCtgtattttgtattatttacTACTCCGTTGGTTATCATACTCCTCGCTGGGTCTCTTAGGATGGGTTGGGTTCTAGTCTGGAGTTGGTATGTTGCTGCTGGACAGGACTGCATAGGGCCTCGAATACAGTAAAGACAGGTTAGTGATGCCGAACAGGACAAAAAGGGAAAAGGAATAATATATAGCAGAAGTCTTATTTTATTTGTGATGATTGTTCTGTTAGGAAAAGCCCCTACTACCAAGATGCATACTATCAGCGCTAAGAGACCCCCCACGATTGATGGTTGTGGAGGCGATGTGATTGAGTCACACTTGCTGCAGTGCACTCTTTCATTCAGAAATGCCTCTCCCCTCAGTGTTGAGGTCCAGGCTACTTTCAATGGTCATGAGTTTAAGCTACTCTTCTCTGCTCCAGGCTACTCCCTCCATCCACCACCCTGCTCTGTCACACCTCACTCTGGTGTTTGATCTCTTCCATACGTTTACAGGCCTGCTCGTAGTTCATTTCAATGGGAGAGTGGAGTGATGGACTGGTTAAGAGCAACTTGGTGCTGACTGGATCACACACCACCACAAGTCCAGAACAAACAGAGAATCCATAGTTAGGGGTGCTTCAGTGCCGTTGGGAAAGGAAGGAATAATACTACCAACCAAAATAACCAAGCTACTTACAATGGTCATACATTTCTGTACCAAGGGTTCTGTTGCCATTTCCAGTCTTGGCACTTTGCGGTGTACATACATTTGTGCATGTCTTTGTGTCACACTACACTTTTTAAAAAGGGTTATTTCTGTCTAATCAGTTGGAGTACCAGAATTCTCTTTAAAAACTAAAGGTCTTTCTTGCACTCAATagtattattttttatatacGAAACCTTAATATTTGTTATTAATCTTTGCATGTAGGTCTATCCAATACAGTTGAATTTAGTTGAAgcattcttttacttttggtatgtcattttagtATGGTATTTCAAATTTAACTGCAATATATTGTCATGTATTATCAAAATATTTGTACTTGCTTTGTCTTGTTTCCCCCTTCTACCATCTTTGGATAAATAAATGGAGAAAAAAAGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU484776 lncRNA downstream 5743 65084259 ~ 65085437 (-) True G427950
TU484710 lncRNA downstream 79582 65010553 ~ 65011598 (-) True G427902
TU484729 lncRNA downstream 94064 64994105 ~ 64997116 (-) True G427906
TU484731 lncRNA downstream 100162 64990788 ~ 64991018 (-) True LOC110524335
TU484733 lncRNA downstream 162961 64927772 ~ 64928219 (-) True G427910
TU484835 lncRNA upstream 72529 65181908 ~ 65183884 (-) True sema6bb
TU484862 lncRNA upstream 113018 65222397 ~ 65222600 (-) True G428035
TU484875 lncRNA upstream 142563 65251942 ~ 65252280 (-) True G428048
TU484885 lncRNA upstream 153774 65263153 ~ 65263382 (-) True G428058
TU484890 lncRNA upstream 158598 65267977 ~ 65268190 (-) True G428063
XM_021603902.2 mRNA downstream 7433 65060166 ~ 65083747 (-) True LOC110524344
XM_021603904.2 mRNA downstream 8122 65060166 ~ 65083058 (-) False LOC110524344
XM_021603895.2 mRNA downstream 39698 65030479 ~ 65051482 (-) False LOC110524339
XM_021603896.2 mRNA downstream 39698 65030479 ~ 65051482 (-) True LOC110524339
XM_036978089.1 mRNA downstream 42713 65030479 ~ 65048467 (-) False LOC110524339
NM_001199827.1 mRNA upstream 12445 65121824 ~ 65137960 (-) True rorca
XM_036978092.1 mRNA upstream 72308 65181687 ~ 65333174 (-) False sema6bb
XM_036978093.1 mRNA upstream 72308 65181687 ~ 65333174 (-) False sema6bb
XM_036978094.1 mRNA upstream 72308 65181687 ~ 65333174 (-) False sema6bb
XM_021603920.2 mRNA upstream 298443 65407822 ~ 65426274 (-) False rgl1
TU484709 other downstream 79582 64999708 ~ 65011598 (-) False G427902
TU484689 other downstream 180182 64905045 ~ 64910998 (-) True LOC110524332
TU484039 other downstream 358208 64725927 ~ 64732972 (-) True LOC110524330
TU484034 other downstream 385155 64701874 ~ 64706025 (-) False LOC110524330
TU484037 other downstream 522800 64566681 ~ 64568380 (-) True G427287
TU484971 other upstream 260737 65370116 ~ 65382590 (-) False G428132
TU486620 other upstream 1677672 66787051 ~ 66789836 (-) True LOC110524398
TU488974 other upstream 2701226 67810605 ~ 67816544 (-) False lrrc7
TU488969 other upstream 2702107 67811486 ~ 67818124 (-) True lrrc7
TU489232 other upstream 3230825 68340204 ~ 68352745 (-) True bend5

Expression Profile