RNA id: XM_036978092.1


Basic Information

Item Value
RNA id XM_036978092.1
length 7955
RNA type mRNA
GC content 0.51
exon number 17
gene id sema6bb
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 65181687 ~ 65333174 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAGCAGTAGCCTACTGAATAATCTGTATTCCACCGCTAGTAAATAAACACCCTGTGATCTTCCTATCTTCACAAAGCTCCTGAGGGGTAAACTAcagaaaaaatacatatttttcataAACTGATGAATGGGAGTTTTCTACCCGCGGAATTCTGAAGCAGAAGCATACTGGAAAAGGGGCGCATACCAGACTGATGAACAGCCCTTTCTCTCAATGAGACCCGAAGTGAAAAGACGCAGTAATGAATGACAGTATACTGGCAAGAGCAGCAGCCGTGCGCAGCTACATCGAGCACAAAATAACTATTGTGGGGATAGATGATTGATAACGCAACTGCTATAGTGCAGGCTGGGAGAGCGAAACAGATGTAATTTTCTTACGCTACAGCTGGTTCAGTGCCACTGGGTGCTGCATGGATTGTTATTGCAATCAGTCCTTCTACATCAGCCACTGCTATTACTTAGGAATTCCGGACGGCTGTCTGAGGAGCAATATTGCTGCAGAGCTCAACGGGAATGCCATGTGTCGTGGCGCGACATAAGAACCGCTTTGTGGTGTCTTGTCCACCGGGACAGGTGGTGTTGTGTGTGCTGGGGGTTGGTGGGGGTATATGAATACACAACCCGAGAGACAGTTGTGTTAGGGATGTCACGCCGCCGTACGGGATCAGTTTTTGCCAGAGACAGGTGCGACAGAGAGGAGTAGTAGTTTACAAACGACGTTGGATTGGTGTTGACGAAAACCTCGGGCCTGTCTATCCTTTTCTTACATACTGGATATTAATCCAGGGGACATCATACTGTGGAGGCAAGAACTGTGTAATCGTCGCGTTCCGGGCGCACCTTTTACTCGACAATCAGCGATCCTGTATTCTGCTGCCACCATGTCAACCCTGGCACCACCCTTCTTCCTGCTGTTCTGGCTCCTCCGATTGGCCAGCACTGCGTTTCCGGAGGAACCGGGGCCTCTGAACTTTATCTCCATTGAAGTGGTTCACCGGTACCCAGTGTTTCTGGGTCGGCCACATCGTTCATCCCTGAGACAGGAGCCACTGCATATTCAGAGAGTCCTCAAGGTGAACCGGACCCTCTACATTGGAGCGAGAGATGACCTTTTCCGCGTGGAGCTGGACAATGTGGCGGGAGACGAGATGTTCTACAGTAAGaaGAGAACATGGGAGTCCAACAAAAATGACATCAGGACCTGCCGAATGAAGGGCAAGCACGAGgaTGAGTGTCGGAACTTCATGAAGGTTTTGCTGAGTCGACAAGGAGGTCTGTTTGTATGTGGGACCAATGCCTTCAATCCGCTGTGTGCCAACTATACTGGAGACACTCTGGAGATGGTGGGAGAGACAGTCAGTGGGATGGCCCGCTGTCCCTATGATCCTAAACACGCCAACGTGGCTCTGTTCGCAGAGGGGAATCTGTTTACGGCCACTGTGACGGACTTCCTGGCGATAGATGCTGTGATCTACCGTAGCCTGGGGGACAGTCCTGCACTCCGCACAGTCAAACACGACTCCAAATGGTTCAGAGAGCCCTATTTTGTCAGTTCAGTGGAATGGGGTCCTCACATCTACTTCTTCTTCAGAGAGATGGCCATGGAGTTTAACTATCTGGAGAAGGTACGAGACAAAATGGTACAGGTGTCTCGGGTGTCTCGGGTGTGTAAGGGGGACCTGGGTGGTTCTCAGAGGGTGTTGGAGAAGCAGTGGACGTCGTTCCTGAAGGCCAGACTGAACTGCTCCGTCCCTGGAGACTCCCACTTCTACTTCAATCTGCTCCACTCCACCAGCCCTGTCATCAGGATGCACGGCAGGGACATCATCCTGGGAGTCTTCTCCACCCCCgccaacagtATCCCTGGTTCGGCTGTGTGTGCGTTCGACATGGAGCAGCTGGCTGGGGTGTTTGATGGGAGATTCAAGGAGCAGAAATCACCTGAGTCTATATGGACCCCTGTTCCTGACGAGCTCGTTCCCAAACCAAGGCCAGGGGGCTGTGCTGTTCAGGGCTCCAGGTTCAACTCATCCAATGGTTTCCCTGATGAGATGCTGAACTTTGTGAAGACCCACCCCCTGATGGACGAGGCCGTGCCCTCACTGGGACAGAGGCCCTGGATCGTCAGGACCATGGTCAGGTACCAGCTGAATAAGATGGTGATGGACACGGAGGCTGGCCCCTACAGAAACCGCACAGTGCTCTTCCTGGGCTCCAGCCGGGGGACCATCCTCAAGTTCCTGATCGTCCCCAACCGGGACAACACCGTGTCCAGCAGCAATGTCTtcctggaggagctggagggcTTCATCCCTGACAAgtgTGGGGAGGACTCTCCGCAGGCGAGGCAGTTGTTGTCCCTGACTCTGGACTGGGTGAGCCAGTCTCTGCTGCTGGCCTTCCCCTCTTGTGTGGTCAGGGTCCCTGTGGCACGATGCCAGCTCTACTCACGCTGCATGAAGAACTGCATTGCCTCCAGGGACCCCTACTGTGGCTGGACCAGAGGAAGCACCTGCTCCTTCCTCAGGCCCGGGACCAGACTGCCGTTCGAGCAGGACATAGAACACGGGAACGTGTCCCACTTGGGCGACTGTGATGGTCTCCTGCAGGAGTCTTTCATTGACGAGCCAGATGGTCTGGTGTCAGTCAACCTGCTGGTTGTGTCTGCAGTCTCAGCTTTCGCCACGGGGGCGGTGCTGTCGGGCTTGGCTGTCTGCTGGATCATGAGTCATCGCCACCGCACACGAGGGGCAGGAGCCAACAGGAGCCGTAAAGGGGACAAGGAGCAGAACATGCTGGGTCAGGGCCGGAGCGGCTCAGTGATGAGCGTGACACGTACCAGTGGCAGCGAGAGACCCCGGTCACATTCTCAGGCAGACAACCCGTTCGTAATGCCCAACGGCTGGCCTAAAGGAGAGATGGATCCAGGCCTACCTACTCCAGAACAGACCCCCCTGCAGCAGAAAAGGCCTCCACCCAGCATGAGAGATGTAGACTGGGAACAGAGCCAGACCTTCCTCACCTCAGTGGGCATGCCCTGCCCAGCCAACTCCGTCATCTACCTGAGCTCCAAGTTCCTGCAGGAGAGAGGTGGCAGGCACGAGGGCCCAGGGGATGTGGGGCCCCCCAACACAGAGCGAACACGTTACCTGGTCCTCGCCAGCAACCGGGAGCCACATGGGGGACAACCCAGGACCACCCTGAGGAACTCTGCAGGTGAATACAACTACCCAGCCACGCCACAGGACTCCCCAGACCGCAGGAGGGTGGTCTCAGCCCCCAGCACCCAGATGGACTTTGGGGAGCCTCCCCGCTGGACTCACGAGGGACTCAACTATAACAGCAAAAACGGAGCGCCCTACCCCTCCCAGCGCCCGGGCCTGATCCGGGCCAACCACCACGGCCTTGCCGACTTCAGTCACCTAATGGGAAAGAGCGTGGGCGAGCCTACCCCTAGTGGCCAGTGAGGAGAAGAGCGCAATGAACCCCCCTCTCTGAAACCCATTTCCCCTCAGCAACTGGAATACCCCTCAGACTCACTCTCCCTTCCCGaatcctgtcctgtctgtcctctctcactGTCATTCAATGTTCTGACATCCCCGGCGTGAAgcctgactgactaactgactgaagAGACTAGGTCTCCAGAAGCCAGCagtttagagagagaaagagagagagagagttaaagagaggagGTTATTCTCCTCATGGCTGCAGCTCTGCTATCACCCTGAGAGGTGCACCCCTCTGCTCCTTACGTGGTTTAACCCACAGAGCATGGACTGGACACCATAAAACCAACCTCAAGGACTAGGAAGGGGTGCAAGGGAAGGGACATTTTGTGaaaaaggaaaaacaaaaagaaatgagAACCGCTTCACTGATAATTTAGCTCAGTTCCAGTTGTGAAAGGTCTCATTCTACTATATTGTGCTCTGCAAGTCATTCTTTGGGTGTGACATTTTTATTTCTGCTTTGCTTTTGTGCCAGCATCCAGCAGACAACCATGTGTTTTTCCTTGTTTGTTTTTTCTGGCCACCTCTATCAGTCAGCTCTATCAGTCAGCTCTAACAGTCAGCTTGTGTTTGATAGATATTAGCAATGCCAGGGGCACTGGATCATGCAGTATGGGAAAGGGTTCCTGTCTTAATGTGGGCATACAACACACTGGATCTTCTTATTGGAATAAGCTTGATAATGATGTCAACGATCCATCCCGTTGTGTTAACAATCATGGAAAAAGCACACATTGCTAGTGTGTTTCTAATGCTCTATTATGTGTTTCTAATCAGGCCTTGTAAAGGTTTCCTCCCCCAGTCTGCAGCCCAGATCTAGCAACAACAGCACTGGACTTGAACATGTCAAGGTGGAGGGGACAAAAACCAGCAGGGAGGCGATAAGAGAGGATGGTACCTTAATATCTCTGTGTTTCCTTGGAGAAGTGGAGGGAACAGCGAAAGACAGTCAGAGGGCACAGTGGTATAAGACAACCTTGTCCCTcccactcccttcctccttctctgtctgtctctccctggatCTATGTGACCTGACCTGAGGCCTGGGCTACCCGGCAGGCCAGCGGACAGGAGAGAAGAGTACATAGCCCATGTAGGGGAATGTGAGCCTGACTGTGGGGGTTAGCGGGCCCAGGGCCCTACCACTGGGGAGTTCCATTCAGGCTCCTCTCCCTGACACTGAGCTTCTTTGTGCCCCGGAGCAGGAGGAGATGGCTGCAACAAATAGCCGTTACGAGTCAGGGCCGGAGGGGCAAACCCAGTGCCCCAGCCCAGCGGAATATCAATGAGGACAGCAGCGCCCCCCTGCCCATCCCTCGGGCCCTCTCACAGACACTGGCACCGtttgggactggggctgggaccaGTCAGGGTGGTAGGCCAGGGATGGGCcgatagggctggggctgggagaCTTGCATCATTCAGACTGCTATCACTTCTATATCCCTGCCTTTCAGCATCTATACACAAGGGACATTGGCTCAACAAAGCAAAGTAGAACTATATGGGCGTGGATTGtctccctccgctctctctcgctctctgtttgaTGTTCTCCTTTTGTCTGCCTCTCTGCTCACTCCCCTGTCTGTAGATCCGGTGGCTCGTGTTTTTTCATCCGTGTCATGACTTGTGTTTGTGGATGTTGCTCTATTTCAGGCTACAGCGGAAGTTGTCCATAATCTCCTTGTTCTCCCCCTAGTTCTCTCACCCGGTAGCCATTATCTGAGTGATTTCTGCCGCAATCCCCCAACATTCACAAATCAGTGTTAACTGCACCCTCACCCTGAGCGCTGGTCGGCAACACGCATGGAAGCGCATAGACTGGCTTCATTAGTGGGTCTGTGGGctgggaggagcagaggaggagagctggagagagatggagctggaGGGGCATGGGAGGAGCAGAGGCTGGGCTGATCTGGGTAGGACTGGCAGAGAGTGGTGTTAGAGAAACACACAACAGAGCCAGAGAGCATGAACATAAATCTTAGCAGGGCTTAAATACAAAGCTATGGCTACATTCAGAGCTGCTCTGAAACAGGGGGAGCAGATAGAGGGGAGGCCTGGCCTTGTATAGAAAGCCAGCTGTGTGGtgagctgaggagaggagccAGGTTCGATGGTGGATTTGTTTATCTTAATGTAAAGGGCTAAACCACTGAGGTAGAATACTAAAAGAGATTCCTGGAGTGTAAACACATGATCTAGCTGGGTAAAAATGCCCACTCATGGCTGAGTCCAGGGAGACAAAGCAACAACTGAAtgagtgtgtatgcatgtgtgcctTCATGTGAGTGTGTTGGTTTTTGTGTACTTGAAGTGCATTAGTAGTGAGTGTTGCCATGGATGAGTAAAGTAGTCGGGTGGATTGGGGAGTATATTGAAATAGTACATTCCATACTGTAGTAGACAAAACCACTCCTCCACGTTGTCGTCGTCATCCTCCTATCTCCATTATAGCCCTGAGAGGAGTGTTGGTTGAGAGCATGGGGCCTTGAAGCAATAGTGGACCCCTGgtgccccctctcatctcctctttttCTCCCAGCCAGTGGTGTCCCCTCAGTGCAGTGAGTGAATGAGGCCTACTCTGCCTGCCCAGCCAGGCGTGCTCCAGCTCTTACACTGTTTCACTAAGCATGCTTGATTAGGCAAAGTACATCCCAGCCCCTAATGGTGTGATGAGCCCCTGAGAAGATTAGCAAAAGACACATCAAGAGGGTGACGGGCACCCACTCTCCTCTGCAGCTatccccccatacacacacaatcacagttacacacacataaacatacacacactcagacacacacactgcgccCTAATCAAATTCAGGATGCAATTGAATTACGATCTGCTGTTATCCCCAGGCCAGGGAGGAGGGAGGCCAAACTTGTGGCTCAGACCCATGGATTTGCTCGTTGGAAAAGCCACACATGATTATCTTAGTCCACCATGACTAAACAGTTAAGGAATCTGTGGTTCCCCATAATACAACCCTTCAGGcttgcacacagacagacaaacagacacagacacacaatcagCCTTTCCCTCTCTATATGTTGTATTAGCAGCTACAATCAAACAGAGGTAGTTTTAAATGTGTCAACACCAGAATGAGAAATCTGGGTAATTTACTGTGAAGCGCTCAAAAATCTTTGTTCTTTTGAAAtcagtttttaaatgttttaacccTTTATCTACATTTGCAAATCCGCTAATGCAGTAAATTGCTTTCTTTGGCAGCCATTACTTTCTGCTGGACATGATATGTAGCCCCCCCACCACCCACCCCCAACCCACATGACCTGATCTGTGTGTATAAATATCATGGACTGTGTGTGTCCCTGAGACCATGTCattgtttgttgttggcttgTTTTCCTGAGTAACCCAGTGATTTAGCTAATGCCCCCCAGCCAGAAACTGCCAATGCCAGGATGAGATACTCTAGAAAGACTCAAACCAAATAAGAAGACATGTAACCCAATCTGCTGAGGAATAAACACGGGCAGCAGACATATTTATCATCGAAAGATAAGCACAAAAAAATGTTAGCATTTTTGTAAAGTTGTAGAGAGCATTCTATTTAGTCTGCACTGATCATtcttgtcatgttttttttttgtctgtttctgtggtaATATTTGGTTTGAGTTTTTGGGatttgttgtattggattttctaTTTCCTCTTTGGTGTGTGagtttgatgatgatgatgaagatgatccTGATGAAGATTCTGTACTGTGAACAGCATCTCAGTATTTTCTCCCACTCTGATGCCTGTGCTGTGTCTAAGTTGTGtctgggaggagaagaggaggagaggaggagaggaggaggtgatacagactggaatcaCAACAAAGAGAACTTTCCCACTTTTCCACTCCTCCAGAGTCGAGTCTCCTGCTACAGTGACAGACTCCTGCAGTCCTGTGGCTCTCACCAGAGGCTGTCTGTCCCTGCCTGTGACCAGGGACGCTGTCATTAAATGACacagtgtgtccctgtgtgtacaTAATATCAATGCTTAAATGTAATTTAAGTGCAGTAGCTGCATGACACAGCCTCTGTGTGTACAGAAGTAGCAACGTGTGAATTTATACAGtacatgcaagtgtgtgtgcttgtgtctgcAAATCTGTccatcacacaaacacatgcatgcacCCTCAaacaactgcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacccttcagcAGTTGAACACCATTTCAACATTGTCCTCAGCTCTGCCTGTCACTTAGCATGGAGACTTTGCTCTCTGTCAACTTTCTTATTCTAATAAACCACTCAGACATTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU484776 lncRNA downstream 96250 65084259 ~ 65085437 (-) True G427950
TU484710 lncRNA downstream 170089 65010553 ~ 65011598 (-) True G427902
TU484729 lncRNA downstream 184571 64994105 ~ 64997116 (-) True G427906
TU484731 lncRNA downstream 190669 64990788 ~ 64991018 (-) True LOC110524335
TU484733 lncRNA downstream 253468 64927772 ~ 64928219 (-) True G427910
TU484959 lncRNA upstream 36342 65369516 ~ 65369757 (-) True G428131
TU484970 lncRNA upstream 37652 65370826 ~ 65382590 (-) True G428132
TU485021 lncRNA upstream 102148 65435322 ~ 65436230 (-) True G428165
TU485125 lncRNA upstream 265157 65598331 ~ 65598560 (-) True G428268
TU485126 lncRNA upstream 265433 65598607 ~ 65598850 (-) True G428269
NM_001199827.1 mRNA downstream 43727 65121824 ~ 65137960 (-) True rorca
XM_021603905.2 mRNA downstream 72308 65091180 ~ 65109379 (-) False LOC110524345
XM_021603906.2 mRNA downstream 72308 65091180 ~ 65109379 (-) True LOC110524345
XM_021603902.2 mRNA downstream 97940 65060166 ~ 65083747 (-) True LOC110524344
XM_021603904.2 mRNA downstream 98629 65060166 ~ 65083058 (-) False LOC110524344
XM_021603920.2 mRNA upstream 74648 65407822 ~ 65426274 (-) False rgl1
XM_021603919.2 mRNA upstream 74648 65407822 ~ 65455011 (-) True rgl1
XM_021603923.2 mRNA upstream 131209 65464383 ~ 65507042 (-) True colgalt2
XM_021603925.2 mRNA upstream 187133 65520307 ~ 65550031 (-) False zgc:92140
XM_021603924.2 mRNA upstream 187133 65520307 ~ 65550066 (-) False zgc:92140
TU484709 other downstream 170089 64999708 ~ 65011598 (-) False G427902
TU484689 other downstream 270689 64905045 ~ 64910998 (-) True LOC110524332
TU484039 other downstream 448715 64725927 ~ 64732972 (-) True LOC110524330
TU484034 other downstream 475662 64701874 ~ 64706025 (-) False LOC110524330
TU484037 other downstream 613307 64566681 ~ 64568380 (-) True G427287
TU484971 other upstream 36942 65370116 ~ 65382590 (-) False G428132
TU486620 other upstream 1453877 66787051 ~ 66789836 (-) True LOC110524398
TU488974 other upstream 2477431 67810605 ~ 67816544 (-) False lrrc7
TU488969 other upstream 2478312 67811486 ~ 67818124 (-) True lrrc7
TU489232 other upstream 3007030 68340204 ~ 68352745 (-) True bend5

Expression Profile