RNA id: XM_021603910.2


Basic Information

Item Value
RNA id XM_021603910.2
length 2196
RNA type mRNA
GC content 0.52
exon number 8
gene id plin3
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 65356112 ~ 65366865 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTGCTGTCAGGGTTTGGTCGGGTCACGGCTATCTGGGGTAAACTTCGCAGCCAAGTCAACGGAGGACAGGAGCATGccaaatatattatttttattatcaGCGAGGTCAGTGACTAAATTGACAACCTGTCTGGAAACTAATATTTGGAAAAGCATGCGGAGCTGTATAATGCGAAATTTAAAGAGATATCCTTAAACACATCCTGCACAATGGCCGACAGCGGGAAGACTGATGAGCCCAGTACAGCCACAGCCCAGCCAACTAATGGAGACCAGCAGAGTGTTGTGTCCCGCGTGGGCAGCATCCCCCTGGTGAGCTCTGCGTGTGGTGTAGTGTCCAACGCCTACAGCAGCACTAAGGACAGCGTGCCCCTGCTGAAGGGGGTCATGGAGGCTGCCGAGAGCGGGGTGCGCACTCTTGGGGCAGCCGCCACAACCGGCTCCAAGCCACTCCTGGACAGACTGGAGCCACAGATTTCTGTGGTGAATCATTATGCTATGATGGGACTGGACAAGGTGGAAAAACTGCAAATCCTCCAGCAGCCAGCTGATAAGCTAGTTTCAGATACAATAGGCATAATGTACCAGTCTGTGAGTGGGACAAAGGAGGCCATGACTGGGGCTGTAACCGGGGCCAAGGAAACCATGACTGGGGCTGTAATGTCGGCAGTGTTCGGGGGTGTGGAGATGACCCAAGCAGCAGCCAGTGGATTGTTCAGCTCATTCATGGTGACCGGTGTGGGCCAGATGGTCAGCAGTGGGGTGGGCCTGGCCCTCAGCCATTCTGAGAACTGGGTGGACCATAACCTGCCTCTCAGCGACAGAGAGCTTGCTGCTTTGGCGGAGCCTGCAACAGGTGAGGTGACTACTGCACCAGTGGTGAGCTCTAGCTACTTTGTCCGTCTGGGCAAGCTGTCCTCCAAGGTGCAGGAGCGGGCCCTGGAGCAGTCCCTGGTGAGAGCCCGGCACGCCAGAGATGCCACATACGCAACTTTGGCACAGATCACCAGCACCCTGGACCTGCTGGAGAAAGCCCGCTCCACCCTGGCCACTGCCAACCACCAGCTGGGAGGGGCACCAGAGCAGCTGCTGCAGCGCTGGAAAGAGTGGCAGGAGAAACAACCTAAAcatggaggggtagagatgggggAGGTGGATGATCCCAAAGACCAGACTGAGCAGTTGGAGTGGCGAACCCTCTCGATGGTGCGTGGTCTCAGTGACCAGTTGCGATCTGCATGCTCTGGGGTGGTGTCCAGCGCCCAGGGCTTACCCGGTGCTGTCCAGGACCAGCTGGCAAATGCACGGAAAGCGGCTGAAGAACTGCACTCCTCCCTGGGCAACACTAGCACCCTCACACCCCCCCTCTTGGAGCAGACCCGTCACCATCTAACACAGGTGCGACAGTCTCTGGATGGTGTCGTAGAGTATCTGCTCAATAACACTCCTCTCAACTGGCTGGTGGGACCCTTTGCACCCCAGATCACAGAGAAGGGGGAGGGTGGGTGGGCTGCGAATAAGGGGGCCCCCCAGAACTAGATTTAGACGAGGACCGAGAGGTTGGAGTAGATTACTCCAAAAAGGCATCTCTGAGGCCTGGCATGCCTGCATTTTTTGTACAGTGCAGTAAATGTGCTTTCTAAGAACTTACTGCCCGCATCCATAAGCTatactgatttttttttaaactttatttaactaggcaagtcagttaagaacaatttcttatttataatgacagcctaggaacagtggggttgccttgttcaggggcagaactacagatttttttttttaccttgtcagctcggggatttgatctagcaaccttttggttactggcccaatgctctaagcACTAAGCTACCTGATGCCCTGATGGTAACATATGGAAATCACAATACTGTGTTATAAGGGGAATCTACAACATAAAACTGCCATATTTGGCGTCTAGATCACACTCCAATCTGTGAATGTTGAGAAACGATTTAAAAACAAACAGTAATTTTGTTTCTGTAACTGAATGAAATACAGTATAAACCTCACATGCAACTGATCTTTAGTCCTCTGAAGTTTACAAATTGGTGTGTGACATTTGTATGTCCTCTCTGCTGTATGTGTAAGCTCCAGCAGGGTCTTGCTGTTGTTTCTGAGTACTGATACAGTAGGCTAAATAAAGTCATTTTGGCTCTGGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU484481 lncRNA upstream 6953 65349497 ~ 65349976 (+) True G427698
TU484470 lncRNA upstream 23973 65332162 ~ 65332956 (+) True G427687
TU484438 lncRNA upstream 57458 65299264 ~ 65299471 (+) True G427659
TU484435 lncRNA upstream 66527 65289892 ~ 65290402 (+) True G427656
TU484429 lncRNA upstream 76392 65280325 ~ 65280537 (+) True G427650
TU484522 lncRNA downstream 68586 65435451 ~ 65436294 (+) True G427736
TU484530 lncRNA downstream 84416 65451281 ~ 65452641 (+) True G427744
TU484584 lncRNA downstream 148624 65515489 ~ 65517669 (+) True G427793
TU484624 lncRNA downstream 228909 65595774 ~ 65596022 (+) True G427829
TU484635 lncRNA downstream 239645 65606510 ~ 65643082 (+) True G427838
XM_021601331.2 mRNA upstream 179568 65175178 ~ 65177361 (+) True LOC110522880
XM_036978091.1 mRNA upstream 266432 65083741 ~ 65090497 (+) False mpnd
XM_036978097.1 mRNA downstream 321 65367186 ~ 65375844 (+) False zgc:77486
XM_036978098.1 mRNA downstream 321 65367186 ~ 65375844 (+) False zgc:77486
XM_036978095.1 mRNA downstream 5547 65372412 ~ 65376688 (+) False zgc:77486
XM_036978096.1 mRNA downstream 5547 65372412 ~ 65382613 (+) False zgc:77486
XR_005051833.1 mRNA downstream 5547 65372412 ~ 65382613 (+) True zgc:77486
TU484227 other upstream 328227 65024715 ~ 65028702 (+) False LOC110524338
TU484228 other upstream 328227 65024715 ~ 65028702 (+) False LOC110524338
TU484229 other upstream 328227 65024715 ~ 65028702 (+) False LOC110524338
TU484230 other upstream 328227 65024715 ~ 65028702 (+) True LOC110524338
TU484247 other upstream 359791 64992101 ~ 64997138 (+) True G427476
TU484533 other downstream 86991 65453856 ~ 65521380 (+) True G427747
TU485654 other downstream 775214 66142079 ~ 66142605 (+) True G428696
TU486149 other downstream 1615084 66981949 ~ 67048164 (+) True G429156
TU487389 other downstream 2093864 67460729 ~ 67464143 (+) False LOC110524407
TU487402 other downstream 2093864 67460729 ~ 67464323 (+) True LOC110524407

Expression Profile