RNA id: XM_036978097.1



Basic Information


Item Value
RNA id XM_036978097.1
length 1052
RNA type mRNA
GC content 0.54
exon number 6
gene id zgc:77486
representative False

Chromosome Information


Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 65367186 ~ 65382613 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GTGAGGGAAAATAACGCTTAGAATGACGTCATGGTCGTTGTCTCGAATGTCGGGAGCTAGCGCTTGTTAAGAGGCCGCGCGCACAAAAAGGAAGGATTTATTACTACATTCTGGAGAGCAAGGTCGTCGGCATCTGCAGCACTTCGTATTTCAGGAATatcctgtcccccccccctctcccctccctttttCAGAGAGCATGGCTCAGGAGACCAATCAGACGCAAGTGCCAATGCTTTGCACTATGGGCTGTGGTTTCTATGGTAATCCCCGCACCAACGGCATGTGCTCAGTCTGCTACAAGGAACACCTGCAGAGACAACAGGGCGTGGGCCGTTCCAGCCCCCCAGGTGAGAAAGGCTCGGTTGCTTCATCGCCAGTGGGGTCCCTGGGAGCAGCTGGTGTGTCGGTGAAGCGCCAGACAGCGGAACCCAGCGCGGAAGGGGTCACTCTGCCCGAGGAAAGGACATCCAGTCCCAGCTCCCCCAGCCCAGTAACCCAGCAAATGACAGCCATGAGTATCTCCCAGGATACTGGAGCCACTGACTCAGACCAGGCTaatggggaagaggaggggacatCCAAAAACACAGAGCCAGTGGGTGAGGCAGCCCAGACCTTGTCTGATGGTGATCAGACCCCTGACAAAAATAAGAAGAACCGATGCTTCACTTGCCGGAAGAAAGTGGGCCTCACGGGCTTCGCTTGTCGCTGTGGTAACCTGTTCTGCGCCATTCACCGCTACTCTGACAAACATGACTGTCCTTACGACTATCGAGGTGCTGCCGCAGCACGCATACGCAAGGAGAACCCTATCGTGGTGGCTGAGAAGATCCAGAAGCTATGAGGACTGAGTAGAAAGGTCTGATGTGCAAATTGTGGAACAATTGCGGCATGGAATAATACCAGATAAAATTGTTTCATGGTAGGATAAGGTGGGTGGGGTGGCGGTGTCACAGCCCCTGCCCAGCCACTTCCTttaacatctccctctctctcctagggTGACCGCTTGAGTGTGAATGCCTGTGGTgagatggtctgtgtgtgtg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU484481 lncRNA upstream 17210 65349497 ~ 65349976 (+) True G427698
TU484470 lncRNA upstream 34230 65332162 ~ 65332956 (+) True G427687
TU484438 lncRNA upstream 67715 65299264 ~ 65299471 (+) True G427659
TU484435 lncRNA upstream 76784 65289892 ~ 65290402 (+) True G427656
TU484429 lncRNA upstream 86649 65280325 ~ 65280537 (+) True G427650
TU484522 lncRNA downstream 59607 65435451 ~ 65436294 (+) True G427736
TU484530 lncRNA downstream 75437 65451281 ~ 65452641 (+) True G427744
TU484584 lncRNA downstream 139645 65515489 ~ 65517669 (+) True G427793
TU484624 lncRNA downstream 219930 65595774 ~ 65596022 (+) True G427829
TU484635 lncRNA downstream 230666 65606510 ~ 65643082 (+) True G427838
XM_021603909.2 mRNA upstream 321 65356112 ~ 65366865 (+) False plin3
XM_021603911.2 mRNA upstream 321 65356112 ~ 65366865 (+) False plin3
XM_021603908.2 mRNA upstream 321 65356878 ~ 65366865 (+) False plin3
XM_021603910.2 mRNA upstream 321 65356929 ~ 65366865 (+) True plin3
XM_021601331.2 mRNA upstream 189825 65175178 ~ 65177361 (+) True LOC110522880
XM_021603914.2 mRNA downstream 12217 65388061 ~ 65396176 (+) False abhd17ab
XM_021603918.2 mRNA downstream 12218 65388062 ~ 65396176 (+) False abhd17ab
XM_021603915.2 mRNA downstream 12682 65388526 ~ 65396176 (+) False abhd17ab
XM_021603916.2 mRNA downstream 12682 65388526 ~ 65396176 (+) False abhd17ab
XM_036978099.1 mRNA downstream 12682 65388526 ~ 65396176 (+) False abhd17ab
TU484227 other upstream 338484 65024715 ~ 65028702 (+) False LOC110524338
TU484228 other upstream 338484 65024715 ~ 65028702 (+) False LOC110524338
TU484229 other upstream 338484 65024715 ~ 65028702 (+) False LOC110524338
TU484230 other upstream 338484 65024715 ~ 65028702 (+) True LOC110524338
TU484247 other upstream 370048 64992101 ~ 64997138 (+) True G427476
TU484533 other downstream 78012 65453856 ~ 65521380 (+) True G427747
TU485654 other downstream 766235 66142079 ~ 66142605 (+) True G428696
TU486149 other downstream 1606105 66981949 ~ 67048164 (+) True G429156
TU487389 other downstream 2084885 67460729 ~ 67464143 (+) False LOC110524407
TU487402 other downstream 2084885 67460729 ~ 67464323 (+) True LOC110524407

Expression Profile