RNA id: XM_036978099.1


Basic Information

Item Value
RNA id XM_036978099.1
length 3729
RNA type mRNA
GC content 0.45
exon number 5
gene id abhd17ab
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 65388061 ~ 65396176 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTACCTGTCATTTCCGGAGATGAAAGAACACTGCACGTCCAATGGATTAATAAATGACAGTAGCTGCTAATCATTTCAACCACTAAAAACCGATTTGATTATCAAAACGGATATTCGTGAcgcttgttttttttgtttgttcccAGGCTATATATTTGCGTCGGTGTCCACAAATGACTGTCCTCCTAAAATGTGTGTTTTCAGTAGAAAATGAATGGCCTATCAGTCAGTGAGCTATGCTGCCTGTTCTGCTGCCCTCCCTGTCCGAGCCGTATTGCCGCCAAGCTTGCCTTCCTGCCTCCTGAGCCTACATATTCCCTCTTGCCGGACCTCGATGGGTCTGCGGCCCCAGGGACAGCAGGGTCAGCGGGGTTGAGATCCAGGGGAGGGGTACCTGGAACAGCTGTAGGGGGTTCAGGCAGCACTGGTCCTGCAGAGGGAAAATGGAAGCTCCACCTGACAGAGCGAGCTGAGTTTCAGTACTCCCAGAGAGAGCTGGATGCTACAGAGGTGTTCTTCACCCGCTCCAGCCGTGGCAATCGAGTGGGCTGCATGTACATCCGCTGTGCGCCCACCGCCAGGTTTACAGTGCTGTTCTCCCATGGTAACGCGGTGGACTTGGGCCAGATGAGCAGCTTCTATATCGGCCTGGGCACACGCATCAACTGCAACATCTTCTCCTACGACTACTCCGGCTACGGTGTCAGCACGGGCAAGCCTTCCGAGAAGAACCTCTACGCTGACATTGAAGCCGCCTGGCAGGCCCTGCGCACACGATATGGCATCAGCCCAGAGAACATAATCCTGTATGGGCAAAGCATTGGCACCGTTCCCACTGTTGACCTGGCATCACGGTATGAGTGTGCTGCTGTGGTGCTccactcccccctcacctctgGCATGCGGGTGGCCTTCCCAGACACCAAAAAGACATACTGCTTTGATGCTTTTCCCAACATTGAGAAGGTGTCTAAGATCACGTCACCGGTGCTGATCATCCACGGGACTGAGGACGAGGTGATCGACTTCTCCCACGGTATGGCTCTGTTCGAGCGCTGTCCCAAGGCCGTGGAGCCACTTTGGGTGGAGGGGGCGGGACACAACGACATCGAACTGTACAGCCAGTATCTGGAGCGCCTGCGCCGCTTCATTGGCCAGGAGCTGGCCGCACAGCACGCCTGAAcacccccacaccgcctccaggCTCCAACCCTCCTCTggctctcctctgttcctctgggtcTCCTCTGTTCCCCTGGGTCTAAGTGGGTCAGGAGGAGTGGATGGCTGGGCTCTCAGAATGAATGATCCTTCACCTTTTGGGGCGACTTTGTCTGGATGTTCGGCAGCCCTGTCTTTTAGTTGTTTTCctatttttctgtctctgtcacctGTCATTAATCCTGGTCAGAGAATCTATTCCACCTCCCGCCCCTTGGACAGTGCAAGAATGCACCCAGGCATGGAGGACTCTACCTTCTGCCTGTTTTATTTCTATCTGTCTAAAGCCCCTCTCTATTACCCCAGGCATGGAGGGCTCTCTACCTTCTACCTGTTTTATTTCTGCCTGTCTAAAGCCCCTCTCTATTACCCCAGGCATGGAGGGCGCTCTACCTTCTGCCTGTTTTATTTCTGCCTGTCTAAAGCCCCTCTCTATTACCCCAGGCAAAAACAACCTCAAACAGGTTAGGTGTTCTAaacacatgtactgtatatcatcTTCTGAGACGTTTACACATGATTCAATTTTAACTAACAACCCTAACATGGGCAAATCCTTGAGTAATGAAAGTCTGTTTTGAGCACTGACATTTTGGTATTTAATTTGAATGGGGAATGTGTGTATTTCTCTTTTCTAACACAACGATGACACTGAGCCACTACTTTACAAATCCTGTGGTGTTGACGTATGAGTATAACTGTCCTATTTGAAAGCAGGTTTGTTGCTAATGTTTCTTGTGGAATCTTTTTTCTTTGCTCTCCTCttgtctcatcctctcctcctctgtctcattTACAATTAAGCTGTCAGATTAATAGTCCGTGTCTATGAATAATTTCTTTCATAGACAAATCTTAAGTTTTTATAATTATTAAGCATGGTTTAATTCTAATCTAAAAAGTGATTAGAGCATAAGTCATTTTTAAAAAGTTGCTGAATATTGCTTTGGCTAAAGTCCAAAATCTCTCTGCCAAATGAATTGTTTCAAAAGCATCATTAAGTCGCTAACATCCCTCTAAGACGTGATTGATTTCTAACTCGGCAACCACTCTCATGTTTCACTCCCTGATTCATATTCTACAGTAGTTGTACTACAATTGATGTTATGGACATGTGAGTTTACCTTTAGAACACAAACTAAGTCCTGCCATGTTCTCTGAGTTAAGGAGGCATTAGTTGGCCTTTACTCACACAGAACTCAATTCACATCTTACTGGGTTTCTATATGGGATGTTTTCCAATGGATTTTTAAAATCTTTGTAAGTGATTTAAAGTTGTACATATTCAATTTCACTTGAGTTATTTCATCCCTCTAAAAACACAAAATCATTGTAAATTACTAGGCTTATGCTGGCAATGGCCATTCGCATAGTAAATTGGGTCAGGTCAGTTGAGATTAAGCTGGTTGGGTGGATGGAGTATTAACTGAACTTGCTGCTAAAGATGAGGATAAATGGATTGAAAAGGGTCAAACCCTCCACATCCATTGTATACATTAATGCTGCTTAGTTTGAGGGGAAATGTAACAGTCATACATGTTATTTTACACTGTACAGTGGAATGGATCCAGTGATGTACAGTAAGTATTCTTTGCTGGTGTCATGTTGCATGTTTGATTGGTTGCTCTTTTGCTTCATGTTAGGGGTAATAACACTTCATTATAACACTAGTAGAGCTATGGAATAAGATGTGCTCTAATTTATTATTCACTAGGTTTATTTCCAGCAGGCTCCCTTTTCAGCTCCAACTAGCCCTTTTCACTGACTTCCTACTGTTGCCACTCTATTTCAGACAGACTTAAGATTCCACAatttctgactgactgtgtgaaaGTCGACCAAATGCCCAACTTCCCTGGCATACAGGGTCCACCACAAGATAGTGGAGGTCCTTTTGTTTGGGTTGAGTTTTGGGGGAGTCAGGATTACTTGTACACAGCAATCAAATTTTAACAGTAAATGTTCTGTCTTGAACAAAGCATACCTCTTATATAGTTATGTTCATCAGAACCAAAGAAAGTCCTTCATCACCCATAGTACTTGGGTTTATTGTCCATCACCACATAAACATTTAGGGAACAAAAGTTGTGCGCCCTGAATCAGCCAGGATATGCTCTTGTTCAAGCTGCTAATAGTTTGGTTTGGGACAGCTTAAGCGTGTTTACTCTGGACAATTGTATGGAGAATACAAGCAATACAGCAgatttgtgtgtgtctgggtggcctgagagaggagtgtgtgtagCAGATGATGGACTGTACTTTGAGTGTGAGGAGTTCCAGACACACATTCAGAGCTTTTGTTTAAAGAAACTAAgttatagaaatgtattttttattcaaATGTGTTTACTATATTACATTGTTTGCagattgtttatttttttgctgagggTTAGGATCCAAGTGGATGATGGAGTTTGGTATGTTATTGTATCCAGTTATGCATTGTTTATTATTTACAACTTTGTTATATTTAGTTtaaaatgtcccccccccccccccccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU484481 lncRNA upstream 38550 65349497 ~ 65349976 (+) True G427698
TU484470 lncRNA upstream 55570 65332162 ~ 65332956 (+) True G427687
TU484438 lncRNA upstream 89055 65299264 ~ 65299471 (+) True G427659
TU484435 lncRNA upstream 98124 65289892 ~ 65290402 (+) True G427656
TU484429 lncRNA upstream 107989 65280325 ~ 65280537 (+) True G427650
TU484522 lncRNA downstream 39275 65435451 ~ 65436294 (+) True G427736
TU484530 lncRNA downstream 55105 65451281 ~ 65452641 (+) True G427744
TU484584 lncRNA downstream 119313 65515489 ~ 65517669 (+) True G427793
TU484624 lncRNA downstream 199598 65595774 ~ 65596022 (+) True G427829
TU484635 lncRNA downstream 210334 65606510 ~ 65643082 (+) True G427838
XM_036978096.1 mRNA upstream 5913 65372412 ~ 65382613 (+) False zgc:77486
XR_005051833.1 mRNA upstream 5913 65372412 ~ 65382613 (+) True zgc:77486
XM_036978095.1 mRNA upstream 11838 65372412 ~ 65376688 (+) False zgc:77486
XM_036978097.1 mRNA upstream 12682 65367186 ~ 65375844 (+) False zgc:77486
XM_021603922.2 mRNA downstream 64401 65460577 ~ 65464681 (+) True LOC110524352
XM_021603932.2 mRNA downstream 175252 65571428 ~ 65581138 (+) False npl
XM_021603933.2 mRNA downstream 175261 65571437 ~ 65581138 (+) True npl
XM_021603931.2 mRNA downstream 185246 65581422 ~ 65587007 (+) True LOC110524356
XM_021601272.2 mRNA downstream 190960 65587136 ~ 65590748 (+) False sec22bb
TU484227 other upstream 359824 65024715 ~ 65028702 (+) False LOC110524338
TU484228 other upstream 359824 65024715 ~ 65028702 (+) False LOC110524338
TU484229 other upstream 359824 65024715 ~ 65028702 (+) False LOC110524338
TU484230 other upstream 359824 65024715 ~ 65028702 (+) True LOC110524338
TU484247 other upstream 391388 64992101 ~ 64997138 (+) True G427476
TU484533 other downstream 57680 65453856 ~ 65521380 (+) True G427747
TU485654 other downstream 745903 66142079 ~ 66142605 (+) True G428696
TU486149 other downstream 1585773 66981949 ~ 67048164 (+) True G429156
TU487389 other downstream 2064553 67460729 ~ 67464143 (+) False LOC110524407
TU487402 other downstream 2064553 67460729 ~ 67464323 (+) True LOC110524407

Expression Profile