RNA id: XM_021603920.2



Basic Information


Item Value
RNA id XM_021603920.2
length 5690
RNA type mRNA
GC content 0.49
exon number 17
gene id rgl1
representative False

Chromosome Information


Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 65407822 ~ 65455011 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GTGAGGACCGCGAGTGCGGTGGGCGGAGCTCAGCCATTCAACAGGGGACTGAGGAAGAAGGGAgattgaaagagaggaggaggatttgagagagggggacaacaCAGACAAGAGAGCTGTGACGGATTGTGTAGTGAAGAAAATATTTTACAGAGCAGGACCGCACCGTATGTCGCTGTGGACTGGAAACATTTATTGCCTGGGTTGACTGTTTATACCATGTTCTGATGCAGTCCCCGGATCATGAGAGAAGCGCTGACCATGAGATTCGCCTGGAAAGCTaagatgAGCTCGGTGCAGGACTGgggggaggaagtggaggagggagCAATATACAACGTGACACTGAAGAGGGTCCAGATTCAGCAGGCTGCCAACAAGGGAGCAAGATGGCTGGGGGCTGAGGGGGACCGGCTGCCCCCTGGCCACACAGTGAGCCAGCTGGAAACCTGTAAGATCCGGAGTATCCGTGCAGGAACGCTGGAACGGCTGGTGGAGACCCTGTTGACGGCGTTCGGGGACAATGACCTCACTTACACCAGCATCTTCCTGTCCACGTACCGCGCCTTCGCCAGCACACACACCGTGCTGCAGCTGCTGTTGGACAAATATGGAATTCCAGAGGATAGTGAAGGACCGATGGAGCGATGTAGACCCTCTGAAACCAAAGGAGCCGTTCGAACTGCCCTGGCCTCCATCCTTCGAGTCTGGCTGGACCAGTGTCCAGAGGACTTCCAGGAGCCTCCATCTTACCCCTGCCTCCACAGAGTCATGGCCTATCTACAGAGGGCCCTGCCTGGATCGGAGCCCATTCGTAGAGCCCAGAGTCTATTGGGGCAGCTACAAGCCGAGGCCAGTCTGGATCCAGACTCCGAGGGTTTCTCTGGCGGTTTCCATGGCAACAGCTCCTTCTGCCTGGGTGAGGATGAGGAAGTGGAGATCGAGGTCCAGGAAGACTTCCTGTCATTTGATGCAGATTTGGTGGCCGAGCAGCTAACCTATATGGATGCGTTGTTGTTCAAGAAGGTGGTTCCTCACCACTGTCTGGGTTCCATCTGGTCCCAGAGGGATAAGAAGCAAAACAAGCACAGTGCTTCCACCATCCGTGCCACCATCACCCAGTTCAATGCTGTGGCAGCATGTGTGGTCAGCACCATACTGCACCGACGCCAGATCCGCCCGCACCTCAGGGCACGGGTCATCCAGCGCTGGATAGACGTCGCTCAGGAGTGTCGCATGCGTAAGAACTTCTCCTCGTTGCACGCCATCGTATCTGCACTGCAGTCCAACCCACTCTACAGACTGAAGAGGGCCTGGTCCTGCGTGCACAAAGACGGCATCTCTACGTTCGAGGAACTATCAGACATCTTCTCAGATCACAACAACTACCTGACCAGCCGAGAGCTGCTGATGAGGGAGGGCACCTCTAAGTTTGCCAATCTGGAAGGCTGTGCTAAGGAGCACCAGAAACGCATTCACAAACGACTCCAGCTGCAGAAGGAAATGGGTGCCATGCAGGGGACGATACCTTACCTGGGCACCTTCCTGACAGACCTGACCATGCTAGATACTGCTCTACCAGACCTAGTAGAGGGTGGGCTCATCAACTTTGAGAAGAGACGGAGGGAGTTTGAGGTGATTGCTCAGATCAAGCTGCTGCAGTCTGCGTGTAACAGCTACTGTCTGAGTGCTGACGCTGCCTTCCTGCGCTGGTTCAAGAGCCAGCCCCAgcacagtgaggaggagagCTATGCTATGTCTTGTGACATTGAAGGAGTGGGAGACAGCAGTCCTACTTCACCCAAACCCCGCAAGAGCATGGTCAAGAGACTTAGCCTACTGTTTCTGGGTGTAGACTCCTCGGCAGCGAGTTCCCCGTTGAGGGAAACACCTCGGTCGCCCCCTACTGGCAGCTCTGGGGAGAGCATGGACTCAGTAAGTGTGTCGTCTAGTGACTCCAGCCCTTCAGAAAGCGATGGCATGGCCATGACCCCTATACACACCTCCGACACTCAGCAGAACAAGTTGTCTGAGTCTTCTTCCTGTACTTCTCTCCACTCCATGGACACCACCTCATCATCAGCCAGTGTTCCAATGAccccagcctctccctctctccccgggCCACCCTGCATGCACCGTCGCTCTGTCTCCCTGACACCCatgtccccctcctcccccctgccCCCGGCCTACAACACCCAGGCCCAGGACGCCTGCATCATCAGAGTCAGCCTGGAGCAGGGCAATGGCAACCTCTACAAGAGCATCCTGTTGACGAGTCAGGATAAGACTCCAGCAGTGATTTCTAGAGCTGTGGCCAAACACAACCTGGAGAGTGAGCCTGGGGAGGGATATGAGCTGGTGCAGGTCATCTCTGACGAGAGAGAGCTGGTGATTCCAGACAACGCCAACGTCTTTTACGCCATGAACACCTCAGCCAATTTTGACTTCCTGCTGCGTGTGCGAGGCACCGCGGGGAGGCCGGTCCAGCTGAGAAGTCGCTGCGCCTCCACACTCCCCCGCGCCCAGCAGCGCTCCAGCCTGTCTCTGCGCCTCAGCAAGGTCACACTGTGACTCCCAGGACAGGGGCACAAGGACTGGAGGGACCACAGACTTGAGGGGGTGGGAGACTGAGAAGGAAGCATGGGGGAGTGAGTTGAAGTCAATGAGACTCTGAATACCCTATTCCCAAAACCCCTGTCCCCAATCGGACCCCCACCTCTCAGTGCCCACGTACATCCCCCAACTCCAGAAGCAGCCTGTGGCCTTCCAATCCCTGTCCCTACCACCCCCCAACCCCTATGGACTATTATGGATGTGTAGTGGGACTTCAGTGCCATATAGAATATAGATGCCTTTGGCAGAGCGAGACAGTGCCCCCCTCCCCGCAACCTTCCGCTCTCCACATGAAGAGGTTTTGCACATGCAGGAGGAGTGATTCCTGCCCTCCATCAGTATTCAGCTTTTTTTTAATCAACTCTCTTCTTTCCTGTGATGCCTGTTATGTTTCCCATTCAGAGGGAGATGGGAAGGAGAGTGAGACTGTGATGTCCAGTCCTGTTGCCTTTATTAATGATGATGAACTCCTGTGTCAGTATTAATCTGGGTGATTGATTGACAGGAGCTGTGTGATGTCACTATCTTTCTTCTTTGTTTCCTTCACCTCATTGTGTGCACTGTGTGTAACACACCGGACTGCGCTTCTAATATTCTGAGCTGTGTGACGAATACCATTATAGAGGCATTCTGATAGGTTCCTACTTGGTTTTAACAAGTCCTTTCCTTTTGAAATTGCTTAGCTGTCCTATCTCATCTGTAGGGTGTAGTGACACATAGGATGGGTCTCTATGTGAGGCCCGGATTGAGCGGCCTGCCGCGCTGATTAGCAGTCCTGATAGAGATGCACTTGTTGGTGGCTAGGTGACGTCAGGAGGTGGGAAATGGGTGGAATGAGTGACCTGCTCTTCTTCTTTTCACCTCTGCACAAAATGAAGTATAGttttgttttcctctgttttttaCAGGGCAGAAGAAAAAAGTATATGTATCAAACTTGGAGAGGGTTCCAAAGGATGATGTTCTTAAATTATATGTGAATTCAGATTGTCAGAAAGAAGACAGTGCCAGATTTGCTGTGCTTCATTTGGAATCGTGACAGAGGGACAGACTCTCACTCCAGTGCTCAGTGGGTGCACATTACATTAATGAGTACTGGGGCTTATTCAGGAGGGTGCAGGGTTAAGGTCTATCTGCTGAACACTCCGTCACTTATCATGTGCACTTGGGTGGAGTCGAATTTTTTAGACCAGCGCCGTATGGCAACATGATACCCTCGCCGGTCCATGTGTTCCTAGACCCCCGATTTtataaacattcacaaggctgcaatGGCAGAGATTTTCTTCCCATTTGTGATAAAACGAAGAACCACATTGAAAACTACCACTGTTGGCTAATTTAAAAGAAAACCAACTGCATTTTTGAATAATAGCTAAATCTAATGAAAGTTTCAGTTTGTTTTACATTACCTCATTTTGTGCCTGCCAGTTGGCTGTAGGCTAAAAACAGCAAGCTAGCCTTTCCATCTTCCCACATCTTCCCAATTTATAATTAAATAAATGCCCTGGCAAATATTCTTCTACTTGCCAGTGTAACCTACGACATTATTCCAGTTTAATCTGCTGCTTGAATGTATTCGCTCCCATATCAGCTAAAAATAGAAAGTGGTCATTTTTGCTCATGGAGAAAAAGCACATGGCTAGCAGCTGTTTTACCATTTAGAAGTAGCCTAAAATCAAGTAattacttctaaacaaaataTGTTTTGTGGGGGGATTCTAATAAGGCTATAATGTTTATGGTTTGTGGGGGGATTCTAATAAGGCTATAATGTTTATGGTTTGTGGGGGGATTCTAATAAGGCTATAATGTTTATGGTTTGTGGGGGGATTCTAATAAGGCTATAATGTTTATGGTTTGTGGGGGGATTCTAATAAGGCTATAATGTTTATGGTTTGTGGGGGGATTCTAATAAGGCTATAATGTTTATGGTTTGTGGGGGGATTCTAATAAGGCTATAATGTTTATGGTTCGAACAGTCGCTGAGATTACATTTAGTTATCAATGCAAAATAGGCTACTTTAGTTCTTAGCATCAGATCACTTTTGTTTTCACGGATTTATAGCAACACTGGTGCTTATTTTTAAAGCAAATTGATAGATGTAGAGTTAATGATTTAGTGAAGAGTAAATGTTTTGCGGGAAAATTAATTCAACGTATAAGGAACTTGACTTTTTTCACCGCAACCCCACTTTTTTCTACCACTACATCAGTGTGTGAAACAGCTTTGTGCCAAAAGAGAGAGGaacaaaatcacattttttgggtTCAATTTCAACCAAGTGAGTTTGGTGGTAAAATACAGCCTCATTATCTACACAACAGTGCCCCCACCCTCACAAAAGGAATAATATGCTGCATTTCAACGTTTTTGTGGAGAAAATCCGCATAGCAAGCGACTAGGTAGGCTTACGTACTACAAGGAGCCGCCCATTTTGTGGTGAAAAATGACATTCAAGTACTGCGTTTGCGTAAACTTTCAGATGGAAATTGTCATTCGGAATAGGCAGTCATGTCTGCTCTTACAACAGTCTCAACATTGCAGCCACCTGTGCACCGAGCCACAGCCAATCACTCACTCCCAATAGTTTGAGTCACAGACGATATGAAGAAAAGAAATCACACCAGCCCACACTATGACACTAACTCAGTTCCTCCTGTGCCCAggcctctacacacactacacacacacacctcctacttTAACAGAAACCCTTACTGGCTCCCACACACTGCCTAACCAGCATTAACACCATCACCCcatcggtcacacacacacacacactgaatgctGTCCCTCCTGTGCCATAAATACCTATTCTCTCCTTGCACACTGTGGTTATGGTTATAACACTCGTTCGCTAATACTGACATTCTGGCCATCTCACTGAACGCAGTGTACTGATCTGTTATTGGTCATACTAAAGGCTGGGCAAGGTTTACTCTGTGGTCGATTTCCTCCTATCTTGATTCTCATTCAGCACTTGTGATTTTTCTCTCATGAACTTTGTGTACTTCTTCACTGCCAAAGAATTCTCTACCTAAATaaattattatcattactatgA

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU484970 lncRNA downstream 25232 65370826 ~ 65382590 (-) True G428132
TU484959 lncRNA downstream 38065 65369516 ~ 65369757 (-) True G428131
TU484936 lncRNA downstream 76384 65331224 ~ 65331438 (-) True G428108
TU484928 lncRNA downstream 83804 65323787 ~ 65324018 (-) True G428100
TU484916 lncRNA downstream 97843 65309746 ~ 65309979 (-) True G428088
TU485021 lncRNA upstream 9048 65435322 ~ 65436230 (-) True G428165
TU485125 lncRNA upstream 172057 65598331 ~ 65598560 (-) True G428268
TU485126 lncRNA upstream 172333 65598607 ~ 65598850 (-) True G428269
TU485129 lncRNA upstream 176106 65602380 ~ 65602588 (-) True G428272
TU485130 lncRNA upstream 176570 65602844 ~ 65603144 (-) True G428273
XM_036978092.1 mRNA downstream 74648 65181687 ~ 65333174 (-) False sema6bb
XM_036978093.1 mRNA downstream 74648 65181687 ~ 65333174 (-) False sema6bb
XM_036978094.1 mRNA downstream 74648 65181687 ~ 65333174 (-) False sema6bb
NM_001199827.1 mRNA downstream 269862 65121824 ~ 65137960 (-) True rorca
XM_021603905.2 mRNA downstream 298443 65091180 ~ 65109379 (-) False LOC110524345
XM_021603923.2 mRNA upstream 38109 65464383 ~ 65507042 (-) True colgalt2
XM_021603925.2 mRNA upstream 94033 65520307 ~ 65550031 (-) False zgc:92140
XM_021603924.2 mRNA upstream 94033 65520307 ~ 65550066 (-) False zgc:92140
XM_021603927.2 mRNA upstream 94033 65520307 ~ 65550070 (-) True zgc:92140
XM_021603930.2 mRNA upstream 125071 65551345 ~ 65571171 (-) False LOC110524355
TU484971 other downstream 25232 65370116 ~ 65382590 (-) False G428132
TU484709 other downstream 396224 64999708 ~ 65011598 (-) False G427902
TU484689 other downstream 496824 64905045 ~ 64910998 (-) True LOC110524332
TU484039 other downstream 674850 64725927 ~ 64732972 (-) True LOC110524330
TU484034 other downstream 701797 64701874 ~ 64706025 (-) False LOC110524330
TU486620 other upstream 1360777 66787051 ~ 66789836 (-) True LOC110524398
TU488974 other upstream 2384331 67810605 ~ 67816544 (-) False lrrc7
TU488969 other upstream 2385212 67811486 ~ 67818124 (-) True lrrc7
TU489232 other upstream 2913930 68340204 ~ 68352745 (-) True bend5
TU489586 other upstream 3273547 68699821 ~ 68707448 (-) True G432310

Expression Profile


XM_021603920.2 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 60.
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XM_021603920.2 Expression in each Bioproject

Bar chart with 21 bars.
XM_021603920.2 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 300.
End of interactive chart.