RNA id: XM_021603928.2


Basic Information

Item Value
RNA id XM_021603928.2
length 5087
RNA type mRNA
GC content 0.50
exon number 21
gene id LOC110524355
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 65551345 ~ 65571173 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATCCTAACCGGATGCGGATGTTGTTGACGTTTATCTTAACAGCACCTTTGCTTTTATTTCACGTCTAGTTGGCGGCTAAGGGTTCAGGCTCAAGGCAACAGAGAACGGCCAAATATAACAAGCAGAACAGAAGACATTGCCCGAGGGGCTTAACTCAACGGCTGGAATGGACTCGGCGCCTTTCCTACTTCGCTTGTTTTTGGACTGTCATTTACCGGacaagctggctagctagctggctagtaacGTTAGGCTCCACAACTGTCGGACGAAAGAAGGGAACAGTCAAAGGAGGAAATAACAGCCAACAAAGTTAGCTTTCTGGTTAATTATCTTTCTCGTCTAGCTTGCTTTACGGATATCCTAATTGttatagctaacattagctagatcTTCTCTATGGGGCTACTGTCGATAACAACGGAACAACTTTGTAGTCAGCTACGTTATCGGAATTAGTTCATGATTAGCCAATTATTTTGTAGTTTTAAGTTGACCTGAAAGCGAGAATTTACCTCTTCGGTATTACTGGCTCAGCGTTTATGGTGTCCGCTTACCCAGACACGGATGTCAAGTAACGTTAATAGGAAAGGAGAGTTTGTTTTGATTGACTTGAAGAATGTTACACTGTCAGTAATCTATGTGTTAATAAACGCCATAGACAGCGGGGTTTAACAGTATGTGAATGTTTTGTGTTGACTGAAGCGTTGACAACGTGTCACACGCTACGGTAGGTCCGGGTGCCGCGCGTGTCAGTGATCGGAAAGCAAACAGGTGTGACCAACAGGTGAACGCGGTTTTAAGGGATTTGACACCGAGTCAAGGAAGGAGTGTGCGCGAACGTCTTGGTATAACTTTGTCTTAGATATTAAGACGCATTTTATGACAGATCACTAATATCAGTTTAAATAATACTACAGCATTCCTGCATtctgtcaaatatattacttatgaGTCAGATTTTTTAGATACAGTTGTATGTCCAACCTCTTATCACACCACTGCCATAAACCGGGATTTGTACATTATGACTTTGGTGAGGTGGAGTGAGTCAAAGATGGTGTCTAAATGGGCATTAATAAGCTTATTAGTAACAATATTGTTGGCCTTATAAACAGCACTGCCTCAATGTGTTGTTTGAAAGCGTTAAATAATCATTGGGCAGACAGACTGCTGAATATGTGAACATGAGATCTGAGTGCTTGTGTTTATCAGAGAGTGTTGTGGTGTCTAGGCCAATATTAATGTGATGATCGGTTACAGTTGCGCTTGACTGAAAAAGCCAGGTTGTAGCTATGTGGACAGTGTTGTGGTTTCGCCCCGCAACAATGTCGGCCCTATTGTTCTCATTGCTGCTATTGCTGAGCACCTTATGCAGGCTTGGACAATCTATGTCACGAGAGGAGAAGCTCAAACTGAGGAACCAAGTGGTTGAGATGTTTGACCATGCTTATTCAAATTATATGGACCATGCGTACCCAGCAGATGAGCTGATGCCTCTGACGTGTCGGGGGAGGGTGCGTGGGCTGGAGCCCAGTCGGGGAGACGTGGATGACGCACTGGGGATGTTCTCTCTCACCCTCATCGACACCCTGGACACTCTAGTGCTCTTAAACAAGACAGCAGAGTTTGAAGCAGCAGTGAGGAGAGTGCTGAAAGATGTGCGACTCGACAATGACGTTGTGGTGTCTGTCTTTGAGACCAACATCCGTGTGCTGGGGGGGCTGCTAGGGGGCCACTCCATGGCTGTGATGCTGAAGGATGCAGGGCATTACATGCAGTGGTACCAGGATGAGCTGCTCCACATGGCCAAAGACCTGGGTCTCAGACTCCTGCCTGCCTTCAACACCAGCAGTGGCCTGCCTTACCCCAGGGTAAACTTGAAGCATGGTGTCAGGGGTCCTGAGTCTCGGACGGGCACAGAGACGGACACCTGCACAGCTTGTGCTGGTACCATTATTCTGGAGTTCGCTGCCTTGAGTCGCTTCACTGGGGACCCTGTGTTTGAGGTCCATGCACGGAGAGCCCTAAACTTCCTgtgggagaagagacagaggaacagcAACCTAGTGGGAACAACCATCAACATCCACTCAGGAGAGTGGGTCCGCAGGGACAGCGGCGTTGGAGCAGGGATCGACTCGTATTATGAGTACCTGCTGAAAGCCTACATTCTCCTGGGAGATGACCTCTTTCTGCAGCGCTTCAACATTCACTATGCGTCTATAATGAAGTACATCAGCCAGCCTCCTCTCCTGCTGGATGTTCACATCCACAAGCCTCTGCTGCCTGCTCGCACCTGGATGGACTCCCTCCTGGCCTTCTTCCCTGGGCTGCAGGTGTTGAAGGGAGATATCCGTCCGGCCATTGAGACCCATGAGATGCTGTATCAAGTCACCAAGAAACACAACTTCCTCCCAGAGGCGTTCACCACTGATTTCAGGGTACACTGGGCTCAGCATCCACTTAGACCTGAGTTTGCAGAGAGCACCTATTTCCTGTACAAGGCCACCAAAGACCCCTACTACCTAGAGGTAGGCCGCACGGTGCTGGACAACCTGAACCGCTTTGCCCGGGTCCCCTGCGGCTTCGCTGCCATGAAGGACGTTCGCACCGGGAGCCACGAGGACCGAATGGACTCCTTCTTCCTGGCGGAGATGTTCAAGTACCTGTTCCTGCTGTTTGCAGAGGAGGAAGATCTGCCGTTTAATGTTGAGGACTACATCTTCACCACAGAGGCTCACCTcctgcccctgtccctgtccaCTGCCCCTCACGCCCCCTCTCCTCCAGTCAACTCCACGGTACAGGCTGCATCTCTGCCTCATCTGTCCGCCTCTGTCAAATCTCTTTGGTCAGAGGAAGAGCTGGATGACTCCAACTTTGATTGGACCTGCCCCAACACACGCCTCCTTTTCCCTGACCCTGCCTTTCCCCGGAACCTCCGAGATCCAATCAGAAGTGCTGTGGACAAGAGCTGTCCCCGCCCTGCCCTTCACCGTGAGCCAGGGATGGGTCGCCCCCCTCTGAGGGCTCAGGACTTCATGGCCAACAACCCTGATCACCTGGAGCTGCTGAGGAGGATGGGAGTCAGCCTTATACACCTGAAGGACGGCAGAGTGCAGCTTGTCCAACACGCTACACAGGCGGTCAGTGCTGTGGCAGCAGAGGACGGGATGCGCTTCATGCAGGAGATGATGGAGCTGTCCAGCCAGCAGCAGAAGGAGCAGCTCCCGCCGCGCGCCGTACAgatcatctcccaccccttcttcGGTAGAGTGGTGCTGACCGCTGGCCCAGCACAGTTTGGCACAGACCTTTTCAAGAGCATCACTGGGGTGCGTGGGTTTGTGACAGTGGCTGAGCCCTACAGTGGCTGTGCGGAGCTGAGCAACGCTGCCTTTGTACAGGGCCGCATCGCTTTGTTGCAACGGGGGCAGTGTATGTTCGCTGAGAAGGCAAGACACATCATGAAGGCTGGGGCCATCGGAGGCATAGTCATCGATGACAACGAGGGCAGCAGCAGTGACACAGCTCCCCTCTTCCAGATGGCCGGCGATGGACGCAACACAGACGACGTCACCTTGCCCCTGCTCTTCCTGTTCTACAAGGAGGGAAACATCCTGTTGGAGGCTCTTAAGGAGTACAGGGAGGTGGAGGTGCTGCTGAGTGACAAGGCCAGAGACCGAGCCTCCATATTCAAAGGTAAACCTCTCCCTGGCATCCTGCTGGAGAGCAGTGGGGACGCTCAGGAGGAGGACCAAACTTCACCCACCTCCGCAACTCTTGACCGGTCACACGTGAGCACTGTGGAGCTGGACGAATCAGCTCCCGAATTGGCTCCTGACAATGAGGAAGTGACTCCTGAGGAGGATGTGGGACCTGCCATTAAGAGTAACCCTGAGCCAGAGCAGGAGCCTGCTGTTGACAAGGACTCTAGCAGTAAATCAGTGAAGGCCATGATGGCTGATTGGCAGGAGGACTTGGAGGCGTTCCAGCAGATGGAGAAGGATGAGCTTTGACAGCCTCCAcattccccccctctcccttattctcCTCCCCACTGATCTTTCCCAGCCACAGTATTGGCCTGGAGGACAGCTGACTGTGCCTCCTAAAGGATAACGTTTTAGTGGGGAGATGATTTTATAAGGAATGGTTACCAGGATTGAATACAGTGACTTCcactctgttctttctcttcacctgTCTCTAGTTTCTCAGGTGTCAACATGCCAGTTGCTCCCCTGGCATATATCTGCCCATCTCATATTTCAGATTCTGGGGGGTCTTCTCTCTTTTGGCTCATAACAGAACAGACTGCAGTCCAGGTATGTCACCATGGACATCTGGTCTAGTTTCACTGTTTTctggtcttttttttttaaatttttttttacgtTTGTCTTCCTCTGAAATACATTTCTGGGTCACTGACATATGGGAGCAGATTCTGAGTGCTGGTTGAATAATAATCCGCTGACTAACTGGTTGAATGATTGGTTTATTTAACTGTGATATGTTGTCGGAACGTTTTACTATTTTATTTTGTGGGCCTAATTTATGGGGTCAATATTAAGCTACTTGGCTGTAAGGGAATGCAGTGAGAAGCAGTCTAAAAGGCTAGTACTGAGAATCACTTAGCACTGGCACTCTCCAGGAAGATATGAAGTTATTAGTGTGACTGTCTATGTATTTGTCAGTTATTTCCAAGGTAATTTGAAATAAAGTGCAGGTTCTGGTTGGTGTGAGAGGTCACCCCTCTGGTCCACATGGGATGAACCGGCCCTATCCTTGCCCTCTGTGTCGTCATGGAGACAGGAGGGCAGACCGCATAGAAGGGTTGGTTGTATAGCAACAAAACCGACTGTTGCGCAACTATATCaagatataaaatactgtactgtctttgggtATACCATGTTCTATATCTATGGCAGACAGTACCACTGACTGGCCAGCAGAGGGGATCCTTGTTTGGGGCATCATACTGATCTGGAGCTTGCTGACTGACTGGAAGACCAAGCAAACAAAAAAGCCAACAATGTAATTAACTTTTAATAAAATTGATAAAGAAATTAACAAAA

Function

GO: NA

KEGG:

id description
K10086 EDEM3; ER degradation enhancer, mannosidase alpha-like 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU485021 lncRNA downstream 115115 65435322 ~ 65436230 (-) True G428165
TU484970 lncRNA downstream 168755 65370826 ~ 65382590 (-) True G428132
TU484959 lncRNA downstream 181588 65369516 ~ 65369757 (-) True G428131
TU484936 lncRNA downstream 219907 65331224 ~ 65331438 (-) True G428108
TU484928 lncRNA downstream 227327 65323787 ~ 65324018 (-) True G428100
TU485125 lncRNA upstream 27158 65598331 ~ 65598560 (-) True G428268
TU485126 lncRNA upstream 27434 65598607 ~ 65598850 (-) True G428269
TU485129 lncRNA upstream 31207 65602380 ~ 65602588 (-) True G428272
TU485130 lncRNA upstream 31671 65602844 ~ 65603144 (-) True G428273
TU485052 lncRNA upstream 72419 65643592 ~ 65643814 (-) True G428196
XM_021603927.2 mRNA downstream 1275 65520307 ~ 65550070 (-) True zgc:92140
XM_021603924.2 mRNA downstream 1279 65520307 ~ 65550066 (-) False zgc:92140
XM_021603925.2 mRNA downstream 1314 65520307 ~ 65550031 (-) False zgc:92140
XM_021603923.2 mRNA downstream 44303 65464383 ~ 65507042 (-) True colgalt2
XM_021603919.2 mRNA downstream 96334 65407822 ~ 65455011 (-) True rgl1
XM_021603936.2 mRNA upstream 106941 65678114 ~ 65681972 (-) True fam78bb
XM_036978104.1 mRNA upstream 293445 65864618 ~ 65959260 (-) False trabd2b
XM_021603941.2 mRNA upstream 293446 65864619 ~ 65959259 (-) True trabd2b
XM_036978108.1 mRNA upstream 474690 66045863 ~ 66050179 (-) False LOC110524366
XM_036978107.1 mRNA upstream 474690 66045863 ~ 66050182 (-) False LOC110524366
TU484971 other downstream 168755 65370116 ~ 65382590 (-) False G428132
TU484709 other downstream 539747 64999708 ~ 65011598 (-) False G427902
TU484689 other downstream 640347 64905045 ~ 64910998 (-) True LOC110524332
TU484039 other downstream 818373 64725927 ~ 64732972 (-) True LOC110524330
TU484034 other downstream 845320 64701874 ~ 64706025 (-) False LOC110524330
TU486620 other upstream 1215878 66787051 ~ 66789836 (-) True LOC110524398
TU488974 other upstream 2239432 67810605 ~ 67816544 (-) False lrrc7
TU488969 other upstream 2240313 67811486 ~ 67818124 (-) True lrrc7
TU489232 other upstream 2769031 68340204 ~ 68352745 (-) True bend5
TU489586 other upstream 3128648 68699821 ~ 68707448 (-) True G432310

Expression Profile