RNA id: XM_036978103.1


Basic Information

Item Value
RNA id XM_036978103.1
length 2506
RNA type mRNA
GC content 0.46
exon number 8
gene id slc35a3a
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 65661962 ~ 65677841 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGGAGGTTAGTTCTTAGTGTTCTGAGCAGATGAGGAAGCAAAAATACCGTACAAGGAAGtaaaataatatgaaatgcttttGACTTAGCTATGTCGTTGCAACTTTAGAATATATACTGTCATAACGCAGACAACAATTATGGTATTATGGACAACAACATCGGTATGAAGGGGCGATGGTAGAATCCGTTGCTGTTAGCCAGCCTGGGTCAATGGACGCGAGGACTTGAACTGTGGATAAGTTACCTGGCTAGCTGTTAACAGACAGCTGAGCTCATTAGCTAGCGCTACAGCGCTCGCTTGAAGAATTACAGCTCAAGTTCAACAACTGTTGTATTACCTAGCTAGCTTTCCAGTGATACCAGACTGACTCCCGTCTGTCCCCAACATGGCATCCTCCAGGCTGAAGTACCTGTCTCTGGGGGTGCTGGTGTTCCAGACCACCTCTCTGGTGCTGACCATGCGCTACTCCCGCACCCTGCAGGGGGACGGTCACCGCTACCTGGCCTCCTCGGCTGTGGTGGTGGCTGAGTTCATGAAGATCATTACCTGTTTGCTGCTCGTCTTCAAGGAACACAGCTACAGTGTTCGGGCTCTGAGCAGTATTCTGAGGCAGGAGATAGCCCACAAACCTATAGAGACCCTGAAGCTGGCCATTCCTTCTGGGATCTACACCCTACAGAACAACCTGCTCTACGTGGCTCTGTCTAACCTAGATGCTGCCACCTACCAGGTGACCTACCAGCTGAAGATCCTTACCACAGCTCTCTTCTCAGTGTCCATGCTGGGCCGACGACTGGGTGTGTACCAGTGGCTCTCCCTGCTCATCCTCATGGCTGGGGTTGCACTTGTGCAGTGGCCCTCTGAGTCCCCTGGGACCCCTGAGAAGGAGCAGCTGTCTGCGGGGTCCCAGTTTGTTGGCGTGGCGGCGGTGCTGGTGGCCTGCTTCTCCAGTGGCTTTGCTGGCGTTTACTTTGAGAAGATCCTCAAAGAGACAAAACAGAGTGTCTGGGTCCGCAACATCCAACTGGgaATGTTTGGCCTGGTGTTTGGTCTGATGGGGATGTTTGCGTACGATGGGGAGAGGGTCCAAGAGTCTGGGATGTTCCAGGGATACAACACAGTCACCTGGATAGTGGTGGCTCTGCAGGCACTAGGAGGGCTGGTTATAGCAGCTGTCATCAAGTATGCAGACAACATCCTGAAGGGTTTCGCTACGTCACTCTCCATCATTCTGTCAACACTCATATCCTACTTCTGGCTGCAGGACTTCGACCCAACTAGTGTGTTCTTCATGGGTGCAGTGCTGGTCATCACGGCCACCTTCCTGTATGGCTACGAGGGCAAGCCCTCCCCCAACCCCAGTCGTGCCTAGGGGACATCGCAGAGGGGGGAAAAGGAGGTCCGAAAGAGAGATCAGGTAAAAGAAGATATGAGAAGAAagtggagaggaagaaagaagtgGAGTGAAGGACACTAGACTAGTGGCATTGAGATGGGCCTCTGACACCATGAAGTGCATCAACTATGAAATGTGACCAGGAAGTAGCCAGACAAGGCTGTTCCTCATCATGGTTACCACTACAGAGAAATACACCCATGAGAAATAGACCCATGAGTCATGACCAAGCTGAGCAGTGTACTGGTCAGCCAGCTTACCGCACTGGGCCAAAACTAGTTGGGGTGGTTCCCCTGTCTTAATGTTACTGTCATCAGCTAAATCATGAAGATGATAGGTAAACAAAGACACCATAATGTTCACACATGACTTGTGACAATAGTCCAGATGTATTGGACTCCACAGACATACTGATGACATACTGATGAACTATGTTGCTGTCTCACTGCTGTAGAGACTGTTTGTGGGTCGTTCCACAAAATGTGTGCCTTTTGCGccccctttgatattttaagtaaaCATGGTGCaccaatattacattttttaaagtctGTTATATTAATTGAAGTGCCCttttgtgtatatactgtatttctaaagatgattatttatttaatgtgattagttattaatttacatttttccctcattttaatgtcaaccctgttacctgaACATCATTCTCATTTTAAATGTAAAGAAACactgaacatctaatagtcaaaccATAGTGTAAAAAAATCTGGTTttactctttttggccattttctgtcacaaggggatttatggctgcTTTTGAGAttaaatcgtcaaccctgttactttaattGGCCTTTACTATAGTATTTCTTTGAGATGGGAAAATTtgtttttatgaagttgaacatgtggtCTTTGACAGAGTGTTAAATTACGtgaaatcaaacacttttttTCCCAAGTTACACTACTCAAAAGGCACCCAATTGGTGAAACGACCCTTGTACTTCTCCTCTCTTTGTCACTTGATTTGTTATTTGGGGAAGTGGGTGAGGATGACTTTGTTACTGTATTTACCAATCATGAGGAACGCACGTCCATAAAGAAAATGTTTCCTACATCAAAGA

Function

GO: NA

KEGG:

id description
K15272 SLC35A1_2_3; solute carrier family 35 (UDP-sugar transporter), member A1/2/3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU484625 lncRNA upstream 523 65658954 ~ 65661439 (+) True notch2
TU484657 lncRNA upstream 4868 65656771 ~ 65657094 (+) True G427860
TU484656 lncRNA upstream 7885 65653676 ~ 65654077 (+) True G427859
TU484635 lncRNA upstream 18880 65606510 ~ 65643082 (+) True G427838
TU484624 lncRNA upstream 65940 65595774 ~ 65596022 (+) True G427829
TU485180 lncRNA downstream 19598 65697439 ~ 65697708 (+) True G428321
TU485229 lncRNA downstream 59138 65736979 ~ 65737304 (+) True G428365
TU485234 lncRNA downstream 65881 65743722 ~ 65744337 (+) True G428370
TU485238 lncRNA downstream 78891 65756732 ~ 65757008 (+) True G428374
TU485239 lncRNA downstream 84845 65762686 ~ 65762936 (+) True G428375
XM_036978102.1 mRNA upstream 513 65604119 ~ 65661449 (+) False notch2
XM_021601272.2 mRNA upstream 71214 65587136 ~ 65590748 (+) False sec22bb
NM_001165250.1 mRNA upstream 71215 65587181 ~ 65590747 (+) True sec22bb
XM_021603931.2 mRNA upstream 74955 65581422 ~ 65587007 (+) True LOC110524356
XM_021603932.2 mRNA upstream 80824 65571428 ~ 65581138 (+) False npl
XM_021603937.2 mRNA downstream 25726 65703567 ~ 65705429 (+) True foxe3
XM_021603939.2 mRNA downstream 35625 65713466 ~ 65715867 (+) True foxd2
XM_021603948.2 mRNA downstream 376123 66053964 ~ 66058160 (+) False znf692
XM_021603949.2 mRNA downstream 376123 66053964 ~ 66058160 (+) False znf692
XM_036978110.1 mRNA downstream 376123 66053964 ~ 66058160 (+) False znf692
TU484533 other upstream 140582 65453856 ~ 65521380 (+) True G427747
TU484227 other upstream 633260 65024715 ~ 65028702 (+) False LOC110524338
TU485654 other downstream 464238 66142079 ~ 66142605 (+) True G428696
TU486149 other downstream 1304108 66981949 ~ 67048164 (+) True G429156
TU487389 other downstream 1782888 67460729 ~ 67464143 (+) False LOC110524407
TU487402 other downstream 1782888 67460729 ~ 67464323 (+) True LOC110524407
TU487928 other downstream 2425338 68103179 ~ 68103534 (+) True G430796

Expression Profile