RNA id: XM_021603937.2


Basic Information

Item Value
RNA id XM_021603937.2
length 1863
RNA type mRNA
GC content 0.48
exon number 1
gene id foxe3
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 65703567 ~ 65705429 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GACGGCGAGGGCGACAGGGACTCAAATTCAGGCTCTCAAGTTAACATAGGGAGGGACCCGAAAGGCAGACACTGTCTCTGAGCAAAACAATACATCCCTTTTAACTTCATGGTGCCTGCATTTTTTTCAGCTGCTATTTGAAAAAGCTATTTCATTTCAAGCAtacataaaaacatatttttttatgaatCTTGAAAATTTCTCTTACTTTTCGGGCATGTGTAACATGACGGCTGAGTCACAGGACTCACCAGCCGAGCTAGCCAGCCCGCTGGTCATGTCGCCTAACGTGAGTCTGGACTCCCCTTTACCGCCATCGCCTCTGATGCTGCAGGCCCGGATCAAAGATGGGGTTCTGATCAAGTCTGAACCACGGGCAACAAGTCCGAACGCGGATCGAGAGGAGGGAGCTACTCTGGGCCAAACCGAGGAGCACCTGCCCACTGGGAGTAGACGTAGGAAGAGGCCCGTTCAGAGAGGGAAACCACCCTACAGTTACATCGCTCTCATTGCCATGGCCATCGCCAACTCCCCCGAGAGAAAACTCACACTTGGGGGTATTTATAAATTCATCATGGAACGTTTTCCCTTTTATCGAGAGAACTCAAAGAAGTGGCAAAACTCCATCCGCCACAACCTCACCCTCAACGACTGCTTTGTCAAGATTCCCCGGGAACCTGGAAGGCCTGGTAAGGGCAACTATTGGACTTTGGACCCCGCTGCTGAAGACATGTTCGACAACGGGAGTTTTCTGCGGAGGAGGAAAAGATTCAAGCGCACTGACGTAAGCACCTATCCTGGGTACATGCAGAGCTCTAGTGCGTTCACCCCGAACCCCATGGGCAGACCGGCATACCCCAACACCATGTACCCAGGAATAGGATCGGGTTACGGCTCGCAGCTGGCAGGGACCCCCCACCCGGTGATGCTGCATCATTATCAGACCCCTGCCGGGGTCAGTCAAGGACAGCCAAGGATGTTCAGCATCGACAACATCATCAGCCAGCAGTCGGTGATGCAGGGAGCAGAGCTCAACCCGCTGGGGTTAGGCGGTGGAGACTTGGGCACCATGTCTGCTAGCTGCTCCCTCACTGGCACTGACCCCTCCAACTGCTTCCAGATGCAGACTGTCAATCCCTCGGGGAATTCACTGGGCAGAGGCGGTGGGGGACTGTCATCAAACCTGGCACCCGGGTATCCTTACTCTTCCTCGGCATCCCCCCCACACCTACCTTCCATGATGCAGTCCAGTTTCTCTCCAGGTAGCTCTCAGGTGTACTGCACGGGGAACCGTCTGTCTCTACCCCCCGTGCGCTCCGGGTCTTGCGCGGAGCACACTGAGCAACTACTGGGTCTCTCCAGCACAATGAACTCTTACAACAACTCTTACATGAGACAAGCCAATTTTGCATCAGGATTAGATCGGTatatgtgaaaaactgatttttatAGAGACAAACAACGATAGAGCCTCAATTACATTCCATTTGAAATAGGTGTGAAACCTCATCTTTGTTTGAAATGCAAATCGACATTCCATTATagttgtgttcatatttcagtgcTATTGGTTCGTTTATCTTATGTGTTTTATAACATCAATATTGATGGGTTTTTAGATGTTCTGTAGCCTATCTACTTGTACTTCCTTGTCCGAGAACAATTCCAATTACTGAACCTTACATTTTTGTCATTGTCACCTGTAAAAAAAATAAGAGTTCTCAAACAATATTATTAGCCATATACCTGTATACTgttctattttgtgaaatgtaaATAGTTTATTTCTTTGTGAATTATATTGAAAGGCCTACATTGTTATTTACCGTGTTTGGTTGGtgtaataaatacatattttcataT

Function

GO:

id name namespace
GO:0009888 tissue development biological_process
GO:0000122 negative regulation of transcription by RNA polymerase II biological_process
GO:0048562 embryonic organ morphogenesis biological_process
GO:0002089 lens morphogenesis in camera-type eye biological_process
GO:0007389 pattern specification process biological_process
GO:0030878 thyroid gland development biological_process
GO:0060022 hard palate development biological_process
GO:0060023 soft palate development biological_process
GO:0051090 regulation of DNA-binding transcription factor activity biological_process
GO:0006590 thyroid hormone generation biological_process
GO:0005634 nucleus cellular_component
GO:0005667 transcription regulator complex cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0008134 transcription factor binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0008301 DNA binding, bending molecular_function

KEGG:

id description
K09398 FOXE; forkhead box protein E

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU485180 lncRNA upstream 5859 65697439 ~ 65697708 (+) True G428321
TU484625 lncRNA upstream 42128 65658954 ~ 65661439 (+) True notch2
TU484657 lncRNA upstream 46473 65656771 ~ 65657094 (+) True G427860
TU484656 lncRNA upstream 49490 65653676 ~ 65654077 (+) True G427859
TU484635 lncRNA upstream 60485 65606510 ~ 65643082 (+) True G427838
TU485229 lncRNA downstream 31550 65736979 ~ 65737304 (+) True G428365
TU485234 lncRNA downstream 38293 65743722 ~ 65744337 (+) True G428370
TU485238 lncRNA downstream 51303 65756732 ~ 65757008 (+) True G428374
TU485239 lncRNA downstream 57257 65762686 ~ 65762936 (+) True G428375
TU485243 lncRNA downstream 64430 65769859 ~ 65770273 (+) True G428379
XM_036978103.1 mRNA upstream 25726 65661962 ~ 65677841 (+) True slc35a3a
XM_036978102.1 mRNA upstream 42118 65604119 ~ 65661449 (+) False notch2
XM_021601272.2 mRNA upstream 112819 65587136 ~ 65590748 (+) False sec22bb
NM_001165250.1 mRNA upstream 112820 65587181 ~ 65590747 (+) True sec22bb
XM_021603931.2 mRNA upstream 116560 65581422 ~ 65587007 (+) True LOC110524356
XM_021603939.2 mRNA downstream 8037 65713466 ~ 65715867 (+) True foxd2
XM_021603948.2 mRNA downstream 348535 66053964 ~ 66058160 (+) False znf692
XM_021603949.2 mRNA downstream 348535 66053964 ~ 66058160 (+) False znf692
XM_036978110.1 mRNA downstream 348535 66053964 ~ 66058160 (+) False znf692
XM_036978111.1 mRNA downstream 353665 66059094 ~ 66106566 (+) True fcho1
TU484533 other upstream 182187 65453856 ~ 65521380 (+) True G427747
TU484227 other upstream 674865 65024715 ~ 65028702 (+) False LOC110524338
TU485654 other downstream 436650 66142079 ~ 66142605 (+) True G428696
TU486149 other downstream 1276520 66981949 ~ 67048164 (+) True G429156
TU487389 other downstream 1755300 67460729 ~ 67464143 (+) False LOC110524407
TU487402 other downstream 1755300 67460729 ~ 67464323 (+) True LOC110524407
TU487928 other downstream 2397750 68103179 ~ 68103534 (+) True G430796

Expression Profile