RNA id: XM_036978105.1


Basic Information

Item Value
RNA id XM_036978105.1
length 2504
RNA type mRNA
GC content 0.43
exon number 8
gene id LOC110524366
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 66045863 ~ 66050198 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGTAATCAATATGCAAAAATATACGTTGTCATAAATATGTCTACTGAAAACCTTCCCATTATGTTATTATATTGAACTATTATGAAGTGGAACAATCTATTCACCTATGTTACACCATTATTAAGCAAGTTAAATAAACTTTGACTCTTTCCCTATTCAATTTTCAGATAAGGAGGACTGCTCTCTCACCTTTCATATTGATAGTTGACCATTTAACCCATATATCATCAGCATTTAGAAGATAGTGGTTGATAAAACGTGTATGTACATACAACCTGAGCTTTGTATAACTTCTCACCAGGTCATGAATTGACCTTTAACATGTTTTATTATGAACATGAGTAGAAATGAGTAGAAACATGAGAAACATGAGTAGAAATATCTTAGAAGGTATCCAGTGTCTTCAGGAAGGTAGCAGTGCACTCAGAGAAATTCaagtaaacaaaaaaaacagacaaaaGGAAATGACAGTTTGACCTGATTAAAGGGATAATTCAAGATTTTGGCAATTTGGCCCTTTATCTATTTCCCCAGAATCAAATGAACTCGTGTATACCATTGCCAAAATacagaagtatccctttaaggatCAAGTGAGATGTTTCTTTTCACCCGGTGAAATAAAATGTGTGATTAGAGTGCTCCATAGATACTTATAGACTTCCTGTCATTGctttaatgctagttagcaacttccttcaaactgcacgcagagataTAAAAATcatatccacaagttcatctgattATGACATCATCCTTTTAGGATGTGTGCCAATTAACTGTCAGTaaaccaacacacaaacacagacacacactcacacacaccctggaaCACGTAGGCTCATTCACAGAGTGCACAAGTATATTTTCCAAGCATGGATGACCTGGGTGAGTATTTTTTCCTCTGCTTCTGTTGTGATGATTAAATATAAAACAAAATGCAATAGATTAAACTATAAGGGAATACACATTGATAGGTATGAGCATAAATAAGTTTAAAAAAGGAAGTTGCTCAGGAGGTGTACATGAACATGTTTTATGGTGTGTGGTGAATTAATGCTTGCCTTGCATTACATTGGTCACGCTGAACATGTCATGTGTTCTATCATACCTatttaaattgtgtttttgttGATATGATTGTCAATGTAAATTCACAGTGAACCACAGAAGGTTATCTCtgttgagagacagatggattCCTGACGTTGTTGACGGAAGTCACTACCAACCAAATTACCTTTTCCTAGAGGAGTTGGCTTTTAACTCAACTGGTCCAGAGTCGTCtcagaagaaagaaagagatacagCCAACACATATGGACAGtgagTTACCAGCTCCAATGGAGGCTGGTCTGCTGAGCCCTCGCTCTGCTTCCAGAGAGCTGGATTCCATAATGGATGAATTGCTGCTTGACCTGGAGATGGGGCTGCCAGACCCTTCTCCCTCAACCCCACCACCGCTTGTCCAGAAGTCAGTCAAGAAGAAACAGATTGGAGAAAAGAAAGAAATGGATGACACACAAGTGAAAGATGAGAGCACAAACAGCCCAAAGACTTCTGATCTGGAGCGCAAGGCCTCAACACACGGAAAAACAGACACCATAGATGACCTTCTGGGAGGCCTGAGCTCTGATATGGAGAAGATGGGTGTACACACCACGGCCAAGGGTCACTGTGCTTCTTGTGGAAAGGTCATTGTGGGAAAGATGATCACAGCCCTGGGCCAGGTGTGGCACCCAGAACACtttgtttgtgtggtgtgtacGGCTGAGCTGGGCACCATTGGCTTCtttgagagggaggggaaggcctACTGTGAGAAAGACTACCAGCATCTCTTTTCACCCCGCTGTAGTTACTGCAAGGGCCCCATTCTGAAGAACATCCTGACAGCGATGGACTGCACCTGGCACCCTGAGCACTTCTTCTGTTCCCACTGTGGGGAGTGCTTTGGGCCTGAAGGTTTTCTGGAGAAGGACGGGAAGCCGTACTGCCACAGAGACTTTTACCATCTCTTTGCTCCAAAGTGCTCTGGCTGCGGAGAGCCTGTGAAAGAGAACTTCCTGACTGCAGCCAACGGCACCTGGCATCCCAACTGCTTCGTCTGCTCAGACTGTCTGAAGTCCTTCCCCGATGGTTGTTTCCTGGAGCTGGATGGTCGTCCCCTGTGCTCTCTGCACTTCCACTCCCGCCAGGATACACTGTGTGGGGGCTGTGGAGAGCCCATCTCTGGGTGCTGCATCTCGGCTATGGAGCGCAAGTTCCACCCTGAGCACTTTGTGTGTGCTTTCTGTCTGAGGAAACTCAGTCAGGGAGAATTCAAGGAGCAGGCAGGGAAACCCTACTGCTCAGCCTGCCACACCAAACTGTTTGTGTGAGGTAATCAAGGTAATCAATTAACCTGAAAAAAGTCCTACTTACAAAGTATGTTGAAAATCCCACACAAATAATCTAGGCAATATCTGCATAGAAATCTAAAAATAAACGATGAATTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU485558 lncRNA downstream 3040 66042611 ~ 66042823 (-) True G428622
TU485556 lncRNA downstream 5900 66039751 ~ 66039963 (-) True G428620
TU485551 lncRNA downstream 7304 66038192 ~ 66038559 (-) True G428615
TU485545 lncRNA downstream 9523 66025895 ~ 66036340 (-) True G428610
TU485519 lncRNA downstream 21124 66008284 ~ 66024739 (-) True G428588
TU485586 lncRNA upstream 3848 66054035 ~ 66054742 (-) True G428633
TU486231 lncRNA upstream 56651 66106838 ~ 66108450 (-) True rfx2
TU486239 lncRNA upstream 72874 66123061 ~ 66123611 (-) True G429244
TU486242 lncRNA upstream 85961 66136148 ~ 66136396 (-) True G429247
TU486235 lncRNA upstream 113258 66163445 ~ 66163684 (-) True G429240
XM_036978104.1 mRNA downstream 86603 65864618 ~ 65959260 (-) False trabd2b
XM_021603941.2 mRNA downstream 86604 65864619 ~ 65959259 (-) True trabd2b
XM_021603936.2 mRNA downstream 363891 65678114 ~ 65681972 (-) True fam78bb
XM_021603928.2 mRNA downstream 474690 65551345 ~ 65571173 (-) True LOC110524355
XM_021603929.2 mRNA downstream 474691 65551345 ~ 65571172 (-) False LOC110524355
XM_036978112.1 mRNA upstream 56650 66106837 ~ 66175123 (-) False rfx2
XM_036978113.1 mRNA upstream 56650 66106837 ~ 66175123 (-) False rfx2
XM_021603955.2 mRNA upstream 163310 66213497 ~ 66241138 (-) False mllt1a
XM_021603956.2 mRNA upstream 163310 66213497 ~ 66241138 (-) True mllt1a
XM_021603957.2 mRNA upstream 194193 66244380 ~ 66249228 (-) True acer1
TU484971 other downstream 663273 65370116 ~ 65382590 (-) False G428132
TU484709 other downstream 1034265 64999708 ~ 65011598 (-) False G427902
TU484689 other downstream 1134865 64905045 ~ 64910998 (-) True LOC110524332
TU484039 other downstream 1312891 64725927 ~ 64732972 (-) True LOC110524330
TU484034 other downstream 1339838 64701874 ~ 64706025 (-) False LOC110524330
TU486620 other upstream 736864 66787051 ~ 66789836 (-) True LOC110524398
TU488974 other upstream 1760418 67810605 ~ 67816544 (-) False lrrc7
TU488969 other upstream 1761299 67811486 ~ 67818124 (-) True lrrc7
TU489232 other upstream 2290017 68340204 ~ 68352745 (-) True bend5
TU489586 other upstream 2649634 68699821 ~ 68707448 (-) True G432310

Expression Profile