RNA id: XM_036978110.1


Basic Information

Item Value
RNA id XM_036978110.1
length 2292
RNA type mRNA
GC content 0.50
exon number 11
gene id znf692
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 66053964 ~ 66058160 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTTCCTCTGTTCCTGTTTATATTTCTCCCTATTCAATTGTAGTTATTGATAGAGCTTTGAGTAGAGTGATGAATGAAAGGCAGTGTGATTTCTTATAGTTTACCAGTATTATTAGTATTTTAGCAGCAACATCACTCCACAATCGTACAGACAGTAGTCGATTGGAATCTACTACCAGGGGTTGCGTCTTAGATCTTAAAAGGGCAACTGAATCATGGCGGGTGGGACCCCTTAGAATTGACAAGACTGAGTCAACTAAACATAACGAGGGTGATGGAGCAGATGAATGACCCTTTGACAATGGTGTCGGAGTCTACTCCAGACACCATCAGACAGCAGAGGCGCAGGGAGCTGGACGCTCGGCGGAGTAAGTCTCGTGTGCGTCTGGGGTCATGCCTGCAGAGCTGGGGTCAGCTGAAGAACCACCTGGGATTCTCTCTGCACTCTGAGCTCGCCAACTACCTACTGCAGAGCTATTTTTCTAAAGTGTGTGCCAAATGTTCAGACAATATGAAAGGAGATACGACTGCCTTGGTGACATCAAGAGAATCTCTGCATCACCTCGCCCTATTGGTCCACACCCACGGGCAACAGTGCCCCTTCCCACCAACCCTCCAATCTGACACTGCCAGAGAGAAGCAAGCAGCTGACACAGAGGGAAGCCAGTCAAAGGGAGAGGCAGTGAAGCAGAGAACAGGCCCAAAGCACTTACCACCTCAGACAGGTGTGAAGGACTGTAGTTCTCCAGAGGATGGCCTCTCCCCATGTGCTCTGGGGAAGGAAATGAGAGAACCCCCGGATGTGTTAGAGGCAGAACTGTGTCTGCACTATGTCTGTGAGGGAGGGCATCTGCTTTCATGGCAACCTAGTCAGAGTGACTGTGATGAAAAGaggggggcaggagagagggaaggagagattgTGGAGGGGGATATTACCCCTGCAGGTCCAACTATGTCCAAAGGGAGGATAGGAGCAAAGGAGCCCAAGAAGGAGAGTGTCACAGGGAGGGGTCGTCTTACTGTGAGGAGGACTAGGGCTTGTGGTGGAGCAAGGTCTGTGGTGACCCAAGAGGAGGCACAGCAGCCAGGAGAGGAGACGATGGACCTGACAACCCTAAACTCTGGAGAGAGCAACTCAAGAGGAAGTGAGAATGCACAGGAAGGGTCAGTGGCAGGAAGTGACACAATGCCAGCAGAGTCCTTGCAGTCATTGGAGGATTGGCGGCTACCTATGGAATGTAATGATCATGACGATGATAAGGAGCACAACCCAGACAACATCACTGGAGAGAAGGATGTCCCTTCACCCGGCAGACCGGAGCCAGCCGACAATGTTTCTCAGATTGTCAGCAAAAAGAAAAGAAAAACAACACCGAAAGCAATCTTGCCATGTGAGTTTGATGGCTGTGGGAAGATCTTCTCCTCTCGGCAGTACCTCAATCATCATATGAAGTACCAGCACTTCCACCAGAGGACGTTCACCTGCTCTCACACTCCCTGTGGAAAGTCCTTCAACTTCAAGAAGCACCTGAAAGAGCATGAGAAGCTGCACAGCAACCAGAGGGACTTCATCTGTGAGTTCTGTGCCCGGGCTTTCCGCACCAACAGCCATCTTCTCATCCACCGCCGCATCCACACCGGAGAGAAACCGATACAgTGTGAGGTATGTGGCTTCACCTGCCGCCAGAAGGCCTCACTCAACTGGCACATGAAGAAGCACGACGCTGAGAGCAGTTACCAGTTCCCCTGTGAGGTCTGCGGCCGGCGCTTTGAGAAGAGTTACAACCTGACCGCTCACCACCGCAAAAGCCACCCTGACTAGACCTTGAGCCTCACTATCACCAACCCTGACCCCCCACCCACACCGCCccttccctgtccctgcagaaCAATGACCACACCACCACAGCCATCGGCACAGCAACAGATGACTGCTTTATCATTGGCGTGACATGAAACCATGATGCTGTGTTTTGCCCTGTGTTTACACCTGTAGAAAGTGTGTAAATAATGCCCCCTTTGGTCTTTTGTTACCCAAATGTCCAGTAGGTCAGTGGCTCCTATGCAGTCCATGGACAATCTTCATACTGAATACAAGCAGTCTCCCCTTCGTCcctatgtgtgtttttgttacaTGACTCAATATTCTTTGGGTTAAGAACGGTAATGATTGAGAAGACCACCTTTGGATGTTGCTTTTGTATAAATCTATTACTATGTCGTTTTATTTATGAGGAAAGTACAGTATGTCAAAGGGAAGGAAGGGGGAAAATAAAAAGTTTGTGTTTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU485562 lncRNA upstream 2592 66051173 ~ 66051372 (+) True G428626
TU485561 lncRNA upstream 8763 66044527 ~ 66045201 (+) True G428625
TU485479 lncRNA upstream 23494 66023831 ~ 66030470 (+) False G428576
TU485594 lncRNA downstream 48973 66107133 ~ 66108885 (+) True G428637
TU485626 lncRNA downstream 52078 66110238 ~ 66110481 (+) True G428669
TU485627 lncRNA downstream 52827 66110987 ~ 66111208 (+) True G428670
TU485628 lncRNA downstream 53528 66111688 ~ 66111982 (+) True G428671
TU485630 lncRNA downstream 55664 66113824 ~ 66114409 (+) True G428673
XM_021603939.2 mRNA upstream 338097 65713466 ~ 65715867 (+) True foxd2
XM_021603937.2 mRNA upstream 348535 65703567 ~ 65705429 (+) True foxe3
XM_036978103.1 mRNA upstream 376123 65661962 ~ 65677841 (+) True slc35a3a
XM_036978102.1 mRNA upstream 392515 65604119 ~ 65661449 (+) False notch2
NM_001165250.1 mRNA upstream 463217 65587181 ~ 65590747 (+) True sec22bb
XM_036978111.1 mRNA downstream 934 66059094 ~ 66106566 (+) True fcho1
XM_021603954.2 mRNA downstream 125503 66183663 ~ 66210856 (+) False acsbg2
XM_021603953.2 mRNA downstream 134533 66192693 ~ 66210856 (+) True acsbg2
XR_005051834.1 mRNA downstream 182380 66240540 ~ 66248348 (+) True LOC118964639
XM_021603962.2 mRNA downstream 282421 66340581 ~ 66349235 (+) False LOC110524376
TU484533 other upstream 532584 65453856 ~ 65521380 (+) True G427747
TU484227 other upstream 1025262 65024715 ~ 65028702 (+) False LOC110524338
TU485654 other downstream 83919 66142079 ~ 66142605 (+) True G428696
TU486149 other downstream 923789 66981949 ~ 67048164 (+) True G429156
TU487389 other downstream 1402569 67460729 ~ 67464143 (+) False LOC110524407
TU487402 other downstream 1402569 67460729 ~ 67464323 (+) True LOC110524407
TU487928 other downstream 2045019 68103179 ~ 68103534 (+) True G430796

Expression Profile