RNA id: XM_021603954.2


Basic Information

Item Value
RNA id XM_021603954.2
length 4215
RNA type mRNA
GC content 0.48
exon number 15
gene id acsbg2
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 66183663 ~ 66210856 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCCGTTCGTTCTGCTTCTCAGTAGCTGGTGTGCACACCTGCAGGCTAGGCCAAGTAAATGGACTTCCTTTCCCTTATGAACTCTTAAACAACTTCGGCGATAAAGTTTGCAGCACTGAAATTTCCAGCAGGAAAAAGTTGGCTTGTTTTGCATTTACGTGATTGTGTGTGAGCCCGCTGCCATGTCCACAGTCGTGGTAATGGACCCCGCCAGGGACGCCAGCAACTTGCAGTCATCCTGTGGCACCGGGGACAGCATTGCTTCACTGGATGAAGTCACTATGGATTCCACAGCCAATGAGTCATCAGAAGAGGAGTCAGCCGGTGAGAGGGAAGCGGAGACTGGGGCCAACACTGAGCTCACCAACAATCCCACAGACATCCCCACTGaatggcccacacacacacagtcagtgagtgCCCAGCGGCCAGACTCTCTGTCCCTGGCGGTGGCTAAGCCAGACTTGTGGACATCGAGCGGTGACGGGGAGGTGAGGCTGAGGATGGGGGAGTCAGGCTTTGCCTCTGAGCCCCCACTCACCGTAGACCAGATGTTTAAGACTGCTGTGGAGAGGTTTGGCAGCTACACTGCCCTGGGCTGGAAGGAGGGAGAGCAGACCAAGACAATCAACTACCAGGAGTACTACCAGGCCTGCCGCACCGCTGCCAAAAGCTTCCTCAAGCTTGGCTTGGAGCGCTACCATGGGGTTGGCATTCTGGGCTTTAACTCTGCTGAGTGGTTCATTTCTGACATTGCTGCCATTTTGGCTGGTGGGTTTGCAGTGGGCATCTACACCACAAACTCCCCAGATGCTTGCCAGTATGTAGCAGAGAACTGCAAGGCCAACATCATTGTGGTGGAGAATCACAAGCAGCTGCAGAAGATCCTACAGGTTCAAGACAAGCTGCCACACTTGAAAGCCATTATCCAATACAAAGATGCACTTAAAGAGAAGAGACCAAACCTCTACACGTGGACTGAGTTTATGGAGCTGGGCCGTGATGAGCCCGACACAAAGCTGGATGATATCATCACTCTCCAGAAGCCCAACCAGTGCTGCACACTGATCTACACTTCAGGTACCACAGGCCAGCCCAAAGGAGTGATGCTCAGCCACGACAATCTGACATGGACAGCGTTCGCAGTAGGCCGCTATGTCCGGCTGGCAGAAGCCACCAAGTCTCAGGAGATTGTGGTCAGCTACCTGCCCCTCAGCCACATCGCTGCTCAGATGGTGGACATCTGGGTCACCATGAAGGTCGGAGGGGCAACATACTTCGCCCAGCCAGACGCACTGAAGGGCTCCCTGGTTAACACAATGAGAGAGGTGCGTCCCACAGCCTTCATGGGCGTACCACGTGTCTGGGAGAAGATGCAGGAGAAGATGAAGTCCGTCGGGGCCAAGTCGTCCACCGTGCGCAGAAAGGTGGCAGTCTGGGCCAAAGGAGTGGGTCTGCAGACCAACCTCAGCAAGATGAACCAGAATGGAGCTATGGCGAGGATGCCCATGAACTACCGCTTGGCCAAGAAGCTGGTGTTCAAGAAGGTCCGTAAGGCTCTGGGTCTGGACCGCTGCACCAAGTGTTACACAGGCGCCGCCCCCATCACCAAGGATACCCTGGAGTTCTTCCTCAGCCTGGACATCCCAGTGTACGAGCTGTACGGAATGAGTGAGAGCACTGGACCTCACACCATCTCTCTGCCCGACGCGTTCCGCCTCACCAGCGTTGGGAAGTTGATCCCTGGTTGTGAGACTAAGATTAACAATCCTGACGAGGAGGGCAACGGGGAGATCTGCTTCTGGGGACGCCACGTCTTCATGGGCTACCTAAACCAGGCCGACAAGACCGAGGACGCCCTGGACACTGAGGGCTGGCTGCATTCTGGAGACCTGGGCAAACAGGACGACAACGGCTTCCTCTTCATCACTGGACGCATCAAAGAGCTGATCATCACAGCGGGTGGAGAGAACATCCCTCCAGTGCCAATCGAGGATGCTGTGAAGGAGGCCGTGCCGCTGGTTAGCAACGCCATGCTCATTGGAGACAAGAGGAAGTTCCTCGCCATGCTGCTCACCATTAAGTGCCAGGTGAACGGAGACACTGGTGCTCCTGAAGATGAGCTGATGCCCGAGGCCGTAGAGCTGTGTCGGAAGCTGGGGAGCAACGCCATGCGAGTCTCAGAGATCGCCGGTGGGCGTGACCCGGTCATCCATGCCGCTATCCAGGAGGGTATCAACCGCGTGAACGAGAAAGCCACCTCCAACGCCCAGCGCATCCAGAAGTGGACCATCCTAAACCAGGACTTCTCCATCCCTGGGGGAGAGCTGGgcCCCACTATGAAGCTGAAGAGGCCGGTGGTCATGAAGATGTACAAAGAGCAAGTAGAGAATTTCTACAAGGAGGTGGTGACCCCAAGCACCCCTGATAACTCCATGCCCCCCAAATAGGCATTGGACAAAAATACCCCTGCAGAGCAATTCAGAGAAACACTACAAAAGACATGCAGACAGAACAGTCTAAGACAACCACTCCTTGTTcagttcctgtttctctcctgtgaaCATGTTTTGCTAGCTTCCTCCTTTCATTATTGGGTTTTGTTTACATTTGTGGGTgttgtaaagaaaaaaatataagGAAAACATCCATGAGAAGCCATTGTAAGcctttaggattttttttttaaagatgagtTGTTGATATGCTGATTTCAgctatttattttgtattattgtgATGAAGAACAATAACATATGATAGATGAAGTACAGGTGTATGTGATGAGGCTTTGTGAATTTACTGTGATACTTGCAAATAAATTGCATAGAATCCAAAAAGTCCATAGGACATGGTAGTAGAATTTTGGGGGTTAAGTGTTACTATTTTTGTTTTGCCAAAGTCAGAAATTACTTGGACCAAATACACACATTTGGATGATAAATAATGATTACATCCAGTGATCCCTGGtctggattaaaaataaaatatgaagtAAAATGAcagggaaagaaaacactgaacataTCATTGTTCTATTTATTGTATTGTTTTTCTCTGTCTGGTTTGAGTTTTGATGAAAGTGCGTCTATCATTGTGTAGTAGCTCCTAAATAGTGCAGTTCTGCAATAAATACACAAGACAAGCCCTGGGACGACCAATGAAAATTAAGTTGTAGATTTAGTTGATTCCTTGGCGCCATAAGCACATGGCACAATTTTGAGCTTCTGCACCTACCTTATCTGAGAGAGAGCATCCAGATCTTTATGCTACAGAACCATATCATTCAAGCCATATTAGTTTAGTCATGTTTTATATCCAATGAGTTTTACGGACTCTGATCGTCTGTGTGACACAGCCTACGCAATTGCCTGGTCTTGTTGGGATGTTTTGTAACGATTGTGTAAAATTGCTGTGACCATTTAAATACTGTAAATATGTTTTGCTTATTTCCTCTTCTCTGGTCTTCATCAGAGAACGTGTTAGTCTACAGATCAGTCTTGTCTTGAAGTGTGAGAGCCACCACTTTCCTCATGCATACCAGCACAACGCAGACGCGTGTGATGAGAAAAGAGTTTGGTCCTTGCACCACtgaatttgtctttctgaaaACCGGTTCATTATGTTCTCTGGGGTAACTAATCTAAACGAGAATTGAATAGCATTTCAAAATAAGCAGTCATCCTGAAACATAGATACAATCTTACCTAAGACCGGTGTGGACTGGTGTTCACTCTTATTACATTGCAAATACTCTCCCTAAACACACATATATGCATGCTGAGTGGAATTGTGAAAACCATGTATCTCTGCTACCTGCTGTACATGTTAGGAGAACTTGGACTTATGTGTCTTATTGCTGGTTGTGAATTTTGGCCATTTGTCAAACCTTTGAGTCAGTACTTGCAAAACATACTCCCAGGTACATTGTAGTAGGAAGAAATTCATTTGATTTGTGATTAAGACTTTGGCTTCCAGTACCTTTATCTTTTGATGAAATGTTTAAAACAAAGTCATCTAATACTAATGAAATCCAAAGATCCCAGTTGTAAACAATTGCCACTAACATGCCATTGTCTCAGATGAAAGTGAGTAGGTCAAACCCCTTGCAGTTTGCAGAGATGTTAGAGTGCTTCCATATTCAGAGAGAAGCTCAACTGGAGACCCATGTTGATGTTCAGGAAGACCTGTAAATAAACTATTAGCTTACCAAGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU485678 lncRNA upstream 12450 66170987 ~ 66171213 (+) True G428720
TU485675 lncRNA upstream 16774 66166625 ~ 66166889 (+) True G428717
TU485668 lncRNA upstream 25139 66158199 ~ 66158524 (+) True G428710
TU485659 lncRNA upstream 32814 66150645 ~ 66150849 (+) True G428701
TU485658 lncRNA upstream 33374 66150059 ~ 66150289 (+) True G428700
TU485723 lncRNA downstream 57694 66268550 ~ 66295412 (+) True G428763
TU485765 lncRNA downstream 96714 66307570 ~ 66308699 (+) False G428804
TU485766 lncRNA downstream 96714 66307570 ~ 66309460 (+) True G428804
TU485767 lncRNA downstream 99961 66310817 ~ 66311746 (+) True G428805
TU485784 lncRNA downstream 120057 66330913 ~ 66331460 (+) True G428822
XM_036978111.1 mRNA upstream 77097 66059094 ~ 66106566 (+) True fcho1
XM_021603948.2 mRNA upstream 125503 66053964 ~ 66058160 (+) False znf692
XM_021603949.2 mRNA upstream 125503 66053964 ~ 66058160 (+) False znf692
XM_036978110.1 mRNA upstream 125503 66053964 ~ 66058160 (+) False znf692
XM_021603939.2 mRNA upstream 467796 65713466 ~ 65715867 (+) True foxd2
XR_005051834.1 mRNA downstream 29684 66240540 ~ 66248348 (+) True LOC118964639
XM_021603962.2 mRNA downstream 129725 66340581 ~ 66349235 (+) False LOC110524376
XM_021603963.2 mRNA downstream 129725 66340581 ~ 66349235 (+) True LOC110524376
XM_021603964.2 mRNA downstream 138717 66349573 ~ 66355573 (+) False mob3a
XM_021603965.2 mRNA downstream 139471 66350327 ~ 66355573 (+) True mob3a
TU485654 other upstream 41058 66142079 ~ 66142605 (+) True G428696
TU484533 other upstream 662283 65453856 ~ 65521380 (+) True G427747
TU484227 other upstream 1154961 65024715 ~ 65028702 (+) False LOC110524338
TU486149 other downstream 771093 66981949 ~ 67048164 (+) True G429156
TU487389 other downstream 1249873 67460729 ~ 67464143 (+) False LOC110524407
TU487402 other downstream 1249873 67460729 ~ 67464323 (+) True LOC110524407
TU487928 other downstream 1892323 68103179 ~ 68103534 (+) True G430796
TU488020 other downstream 2001860 68212716 ~ 68214104 (+) True LOC110524423

Expression Profile