RNA id: XM_021603955.2


Basic Information

Item Value
RNA id XM_021603955.2
length 4400
RNA type mRNA
GC content 0.51
exon number 11
gene id mllt1a
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 66213497 ~ 66241138 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGCTTGCCAGCAGCCGTCTGGAAGGGGAGGGGTGCTGTCTGGCTTCCGGTTTTAGGCTGAATTTGACACACAATGAGGTGCAGGGAACAACCTATCGCGAAACGCCGCTGTAAATAAATAGAACAATCACTGAAGCCACAGAATCATGGAGAATCAGTGCACAGTGCAGGTGAAGCTGGAGCTAGGACACCGAGCCCAGTTGAGGAAGAAGGTGACCTCGGAGGGCTTCACCCACGACTGGATGGTGTTTGTGCGAGGGCCTGAGACTGGGGACATACAGCACTTTGTGGAGAAGGTTGTCTTCCGGCTACATGAGAGCTTCCCCAAACCCAAGAGAGTATGCAAGGAGCCACCATACAAAGTGGAGGAGTCGGGCTACGCTGGGTTCCTCATGCCCATCGAGGTCTACTTCAAGAACAAGGAGGAGCCTAAGAAGGTGTGTTTCAACTATGACCTCTTCCTGAACCTGGAGGGGAACCCCCCTGTCAATCACCTGCGCTGTGAGAAACTCACCTTTAACAACCCCACACGGGAGTTCAGACGCAAGCTGGTCAAGGCTGGAGGGGTCATGGTGGTGCCGGAAGGGACGGAGGCAGTATCTAGGCCCAGTCCAGACTACCCCATGCTCCCCACCATCCCACTGTCTGCCTTCTCAGACCCCAAGAAGACCAAGACCTCCCACGGGTCAAAGGAGCCCAGTAAAGAGGGCAGTGGAGGCAGCAGTAAAGGGCCCAAGCCCCACAAGCTAACCAAGGAGCACCGCGAACGCCCCCGCAAAGACTCTGAGAGCAAGGCGGCGTCAAAGGGTGACAGCGACCGCGACGGGGGAGGAGGGGGCAGCAGCAAGAGTGCCCGTgagccctcatcctcctcttccaagAAGCCAGCGGAGATCAAAGTTAAAGACGAGGGCAAGGTCCTTCCCAAGGCCGCCTTCAAAGAGCCCAAACTCACACTGAAGGAGGCCAAGATGGAGGGCATGTCCCCCAAAGGAGGGGGGGCTGGGGGAGGGGGCCCACTGGAGCCCAAAGCCCCCGGGAAGCGGCCTTCCACTGCGGAGTCTCCAAAACCCAGTGCCAAGAAGCCAAAGAAGGGCAGCTCAGAGGGATCTAAGGGGACAGCTGCAGTGCTCTTCACCGGAGCCTCTCCCCGGGTCTCTTCATCATCTTCAGTCATCACAGGCTACCCAGAGAAGAAACCCCCCAAGGAGAAAGGCCGCTGGCCCAAGAGCAGCAGGGCCGACACTCAGGAGGCCAAGGAGCCCAAGAAACTGCCTGAGTCTGACGACTCCAACTCTGAGGATGAAGCCTCCTCCAAATCAGAACAGTCAGTCCCCTCCAGTCCTTCTAACTCCagctccagctctgactccagctCAGAGTCTGATTTTGAGCCCGGACAGAAACAAGGCCAAGGCCCGCTGCGCTCTATGGTGGAGGACCTACAGTCCGAGGGGTCAGATGATGATGACAGCAGCTCAGAGGAAGGGACGCCTGTCAAGACCAACCCGCCCAACCGTGACTCTCGACTGAGCCTGGACAGCGAGAGTGACAGCAGTGAAGGCTCGCACCGCCCCAGTCGAGACCCGGCGCCGCCTCCACAGAAACACAGCTCCTCCAATAACAAGGTCTTGGGCAGGAAGAGCCCAGACATCTGCAGCCGCCCAGAGAAGGTGCTGAAGAAGGGATACGACAAGGTAGGAAGGGCCTACACAGAGGAGCTGGTGGACCTCCACCGCAGACTAATGGCTCTGAGGGAGCGCAACGTCCTACAGCAGATAGTGAATCTGATCGAGGAGACGGGCCACTTCAACGTGACCAACACCACCTTTGACTTTGACCTGTTCTCTCTGGACGAGTTGACCGTGCGCAAACTACAGAGCTGCCTGGAGACCACGGCCACGTGACAGGAAGCCTGCAGCGCAGAGGACCGTGGCGGGGCCGGTGCTGGGCTGCTGTCTCTCCTCGGCCCCTGGACCCCCACTGGGGAGGTGGAGCTGTAGCGGGACAACAGAACACACACTTTCACTATTTTCTGGAGAATGGAAGAAcaggatgagggaggagagaggatgaggtcaGAGCAGCTATGCCACTGTCCCTCTAACCTGGACTGGAGGACCAGACTAGGGGAGCTGGCCTGGGACTGGCAAGAGATGTATTATATATGTTTCTTATGGAGAGCAGCAGAGCAGCCTGTGTGCAGAACTGTGGAATgcgaccactctcctctccctccccctctcgccTCACTTCTAGCCATTGCAAACCCAatacttctcctctccttcctccccactCACACTCTTACCCGGCACaacactcctcccctccccctcatctctgCTGGAGTTAATTTCTCTATAGGAATATTCCTGtctatgcatgcatgcatgcattcgtgtgtgtgtgtgagggagagtgtgtctgtgtgagtattTGAGGCTTTAGGGGGGGGATGTCTTTCGTTAGTCACTTTTTCAGTGTTCTTTAAGCTAGCTTGAGCACAAGCAAcagcccttacacacacacacacagtgagaggcATTTGGGTCCCATGCCAGGGTGTctctacacacacaggcactaaGTTGTGTATGTGCCTATTGGTGGTAGTGTTCTGGATGGGCTTCATCTCTTGTCAGTTTGTCAGTTCAAacgtccctccctccttccatctcgaTGTGCATGAAAGGGCTCAACAGCTAGGGGAAATAGCTGTGGAGGATCACTTCTGAATGGccttttaagtgtgtgtgtgtgtgggggggggggggggggggggtgtaaaaaaGCCGTAgccatagaccccccccccccccccccccccgtccaaaCTTGTACTGATAAGTTTGGAGTATTTTGGGGATTGCGATTCAGATACCTGTGAGCTATGAATGTATTACTGCTCATTTTCTAGGGCTAGAAACAAACATATTATCCTCTGTGCCTTTATGCGTTGGCCAGTGTGAGGGTCCACTGACACTGGTTAAAGAGCAAAGTCCCTCTCCTGACTAAGTGTTAATTGGGAAGCCTGAAATTCCGTTTGTCATATAAGTGCCCTCTCTTAAAATCAGTTGATCCTCCCAGTGGGGTTTCTGTGCAAATTGGAGGCTACTTCCAGTGATCTATCTCTGCTATTATTAGGAACACAAGCCTTCCAGAAATCCTAAGACTCATCTGTTCATCAGCAGTGGTACTTTGCCTTGTTTCTTTCCAGATCCTAATATGAATGGTTGTATAGCTGATATTGTGTTGTGCCTGAGGTTTAGTTTTCTATAGATAGGATCAGTGCCAGACCAGGCTTCAGTCAGTCATGTTTCTCTTACTGGGGCTCCTCTAGCCTTCACGTCCACTGTGGTTTCACACTCAGACTAACGGTAAAGTTTTCTCTTTGGGTGCTCCCCCTCACTTTCCTTCTGTTTCACCTAGTGAACAGCTGTATTTATTTTGATGATAATAGCTTTAATAGTTGTGTCCGTTCTGTGTCATGGGCCTGCAAAGTGCACACACAGCTCTCTGGCCCTTCTTCTCCTCTGTGAGGGTGCTGTGGTGTTGAGGTCTGAATGTGTGGATCTGTTCGAGAGTGAAACAGCAACCGCCTTAATTTCCTCTCTGCATCCACTCTGCTCTGTCCACCACCCCTTTATTTGTATGGCTGTGCCTATGTCAACATCCCTGCCAGTGATTTTTAAAAGATGTACTTTGCAACTGTGTGAGTGGGATGGGTTGTGTGTGTCTCAAACGAGAGGAAGGTTCTTGTCCTCGTGTGTGTGAATATGAGGGGCTGAAGGGTTGAGTGGCAGGCAGCTCTGTGCAGCTCTTCCATAGAGAAGCCCCACCAACCGTCAACCAACAGTCAATCTTTTATTTATGTACCTCTGCACTTTTGGCTGTGGTGACTTCAGTACTTAAGTAATTATCTAAACTGTATTTTTAAGAATTTTATACAATATTTACATGCAatacaacagatttttttttgccaacctttttaaaaatgatttaataGTTTTTATTTGTGTTGGCGTGTGTTATTATACATACAGAAACATGCTGTCAATTCTGTTCTTTTAGGCCTAATGTTGCGCCATGGAGAACTTCCCTGAATGTTGTATTGTGTATCATAGTTGTTGCAGTTGGACACCACGGAACAGGTGTTGGGAATATGTTTGATGTATGAGCTAACCAAGTCTATATCATCCAGTATACGTTTATCAAGGAGGAAAATGTGGACTTTTCAGTGAGAAGAAGTATTTTTATGTCCTATTATAATTTGAGTATTTTTAACTCAAAGTATGAGGCAGTGTTCTATTTGTCCGTACTCTATGAGGCATGGTTACGAAGCCCAGGCACAAACTGTCACCCTCTCTTTGGTTCAATATTTATCTGTATTTTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU486271 lncRNA downstream 2643 66208978 ~ 66210854 (-) True G429274
TU486251 lncRNA downstream 36443 66176799 ~ 66177054 (-) True G429255
TU486235 lncRNA downstream 49813 66163445 ~ 66163684 (-) True G429240
TU486242 lncRNA downstream 77101 66136148 ~ 66136396 (-) True G429247
TU486239 lncRNA downstream 89886 66123061 ~ 66123611 (-) True G429244
TU486348 lncRNA upstream 116395 66357533 ~ 66357785 (-) True G429342
TU486354 lncRNA upstream 124300 66365438 ~ 66366434 (-) True G429348
TU486308 lncRNA upstream 138582 66379720 ~ 66383789 (-) True G429304
TU486436 lncRNA upstream 240166 66481304 ~ 66482287 (-) True G429419
TU486412 lncRNA upstream 248417 66489555 ~ 66489780 (-) True G429395
XM_036978112.1 mRNA downstream 38374 66106837 ~ 66175123 (-) False rfx2
XM_036978113.1 mRNA downstream 38374 66106837 ~ 66175123 (-) False rfx2
XM_021603943.2 mRNA downstream 163299 66045863 ~ 66050198 (-) True LOC110524366
XM_021603944.2 mRNA downstream 163306 66045863 ~ 66050191 (-) False LOC110524366
XM_036978105.1 mRNA downstream 163310 66045863 ~ 66050187 (-) False LOC110524366
XM_021603957.2 mRNA upstream 3242 66244380 ~ 66249228 (-) True acer1
XM_036978118.1 mRNA upstream 12572 66253710 ~ 66275790 (-) False myo1f
XM_036978117.1 mRNA upstream 12572 66253710 ~ 66276000 (-) False myo1f
XM_036978120.1 mRNA upstream 12572 66253710 ~ 66276000 (-) False myo1f
XM_036978119.1 mRNA upstream 12572 66253710 ~ 66283455 (-) True myo1f
TU484971 other downstream 830907 65370116 ~ 65382590 (-) False G428132
TU484709 other downstream 1201899 64999708 ~ 65011598 (-) False G427902
TU484689 other downstream 1302499 64905045 ~ 64910998 (-) True LOC110524332
TU484039 other downstream 1480525 64725927 ~ 64732972 (-) True LOC110524330
TU484034 other downstream 1507472 64701874 ~ 64706025 (-) False LOC110524330
TU486620 other upstream 545913 66787051 ~ 66789836 (-) True LOC110524398
TU488974 other upstream 1569467 67810605 ~ 67816544 (-) False lrrc7
TU488969 other upstream 1570348 67811486 ~ 67818124 (-) True lrrc7
TU489232 other upstream 2099066 68340204 ~ 68352745 (-) True bend5
TU489586 other upstream 2458683 68699821 ~ 68707448 (-) True G432310

Expression Profile