RNA id: XM_036978117.1


Basic Information

Item Value
RNA id XM_036978117.1
length 3848
RNA type mRNA
GC content 0.51
exon number 28
gene id myo1f
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 66253710 ~ 66283455 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTGAATGTTAAAGTCTTCTCGGtggctgttctgtctgtgtgactgtgtgtgctgGAGACTTCCTGACTGTGATGGTCGTGCTGTGAAGGGGCTAGTGTGGGATTACCGACACACACAGTCTGGACTTTGAACACCTGGTCCAGGACCGTGGGAGAAGAGGGGCACACGCACCGCCGGCACGAtgGGCAGTAAGTATCACTGGCAGAGTCAGAATGTCAAGCAGAGTGGTGTGGACGACATGGTGCTACTGTCCAAGATCAGCGAAGACGCCATCGTGGAGAACCTGAAGAAGAGATACATGGATGACTACATCTTCACCTATATTGGCTCTGTGTTGATATCAGTGAACCCTTTCAAACAGATGCCCTACTTCACTGACCGGGAAATTGAACTCTACCAAGGGGCTGCCCAGTATGAAAACCCTCCCCACATCTACGCCCTGACTGATAACATGTACAGGAACATGATGATTGATCAGGAGAACCAGTGTGTTATTATCAGTGGGGAGAGTGGAGCTGGGAAGACTGTGGCTGCAAAATACATTATGGGTTACATCTCCAAAGTATCAGGAGGAGGTGATAAAGTGCAGCATGTGAAGGACATCATCCTCCAGTCCAATCCTCTATTAGAGGCCTTCGGCAATGCCAAGACTGTCCGCAACAACAACTCCAGTCGCTTTGGTAAGTACTTTGAGATCCAGTTTAGCAGAGGAGGAGAGCCGGACGGTGGTAAAATCTCCAACTTCCTTCTTGAGAAGTCGAGGGTGGTGAGCCAGAATGAGAACGAGAGGAACTTCCACgtctactaccagCTAATAGAAGGAGCCAACCCCCAGCAGAAAGAAGCCCTGGGCATCATGACtccagactactactactacctgaACCAGTCTGGGACATACAAAGTGGACGGAACCAACGACAGCAAGGACTTTCAGGAGACAATGGAAGCCATGAATGTGATTGGGATCCCAGAGGCCTACCAGGCTCAGGGGCTGCAGATCATAACAGGAATCCTGCACCTTGGAAACATCAGCTTCATAGAGGCAGGCAACTATGGGCAGGTGGAGAGCACTGACTTGCTTGCCTTTCCTGCCTATCTACTGGGCGTTGACCCAACGCGTCTGCAAGACAAACTGACCAGCAGAAAGATGGACTCAAAGTGGGGTGGAAAGTCTGAGTCCATCGATGTGACACTCAATCAAGAACAAGCCACCTATACCCGAGACGCCCTGGCTAAAGCCCTCTACACACGACTCTTTGACTACCTGGTGGAGGCAATAAACAAAGCCATACAGAAACCTCATGAAGAATACAGTATAGGAGTACTTGACATATATGGCTTTGAGATATTTCAGAGGAATGGGTTTGAGCAGTTCTGCATCAACTTTGTCAATGAGAAGCTACAGCAGATATTTATTGAGCTGACACTGAAGGCTGAACAGGAAGAGTATGTTCAGGAAGGCATCAAGTGGACACCAATTGAGTATTTCAACAACAAGGTTGTGTGTGACCTCATCGAGAATAAGTTGAACCCGCCAGGCATCATGAGTGTGCTGGACGATGTGTGTGCCACCATGCATGCCAAGGGTGAGGGGGCAGATGGCACCCTGCTCCAGAAGCTCTCGGCGGCGGTGGGCACTCACGAACACTTCAACAGCTGGAACTCTGGCTTTGTCATCCACCACTATGCAGGCAAGGTCTCCTACGAAATAAATGGCTTCTGTGAGAGAAACCGGGACGTGCTTTTTACTGACCTCATTGAACTCATGCAGAGCAGTGAACATGACTTCATCCGCAGCCTCTTCCCTGAAAACCTCAACACGGACAAGAAGAGCAGGCCCACTACTGCTAGCTCTAAGATCAAGAAACAAGCCAATGATCTGGTGAACACGTTGATGAAGTGCACCCCCCACTATATCCGATGTATCAAACCCAACGAGACTAAGAGACCCAAGGACTGGGAGGAGAGCCGGGCCAAGCACCAGGTGGAGTACCTTGGGCTGCGGGAGAACATCCGTGTACGTCGAGCCGGCTACGCCTACCGCAGAGTCTTCAATAAGTTCCTACAGAGGTATGCCATCCTGACGGCAGAGACGTGGCCGTGCTGGCGGGGGGGAGAGCAGCAGGGGGTCCTGCATCTCCTCCGCTCTGTCAACATGGACACAGATCAGTACCAGATGGGGCGCTCCAAGGTCTTTGTCAAGGCCCCAGAGTCGCTCTTCCTATTGGAAGAGATGCGGGAGAGGAAATTCGACATGTTCGCCAGGACCATCCAGAAAGCCTGGAGAAGGTATATCGCCAGGAGGAAATatgaacagatgagggaggaggCCTCGGACATCCTGTACAACTCTAAGGAGCGGAggaggaacagcatcaacaggaACTTTGTAGGAGATTATCTGGGCCTGGAGCAGAGGCCTGAGCTCAGACAGTTCCTGGCCAAGAGGGAGCGAGTCGACTTTGCAGACTCTGTCAACAAGTTTGACCGCAGGTTCAATTCCATCAAGAGGGACCTGATTCTGTCTCCCAAGGGCATCTACCTGATAGGCAGAGAGAAGGTGAAGAAGGGGCCAGAGAAGGGACAGATAAAAGAGGTGTTAAAGAGGAAGCTGGAGTTTGAGAGcatccactctgtctctctcagTATGAGACAGGATGATTTCTTCATCGTGCATGAGGCTCAGTATGACAGTCTGCTAGAGTCCAACTTCAAGACTGAGTTCCTCAGCCTGCTCTGTAAGCGCTATgaagaggtgaccaagaacaagctgtctctctccttcaacGACAGACTGGAATTCCGGGTGAAGAAGGAGGGCTGGGGTGGAGGGGGCACCCGTGTTGTGGTGTTCCAGAGGGGACAGGGAGACCTGGCAGAGATCAAACCAGCTGGAAAGACCCTCACCATCAACGTGGGAGATGGCCTGCCAAAGACCTCCAAACCCACCAAGAAGGGATCTCCACAGAACCATGGAGGGGGCAGGAGTCAGCCTCCTAGCAGAGGGCACCAGAATGGTGCACCCAGAGGTAGAGGTGCTCAACCGCCCCAGCAGCCAGAGCAAACCTACTCCATCCCCCAGAAACAGAACCGGCCCCCCAGCGCCGCCCTCCCCAAACTGGGCTCCCTGAATACAAGACGAGGCTCGGCTCAGACTCAGCAGGGGAACCTGGACTTCCTCAACGTGCCTGACCAGGGCGTGTCTGGaATGCAGAGGAAGAGGAGTATCAGCAGCCAGCGGCCACCCCCGGCCCCATCCAGCCGGCCCAAGGCCCAGCCACGCCCCACCGGCCCGCGTTGCCGGGCGCTGTACCAGTATGCTGGCCAGGACACAGACGAGCTCAGCTTCGACACCAATGATATCATCGACCTGCTCAATGAAGATGCATCAGGCTGGTGGAGAGGCAGGTTTTGTGGCAAGGAAGGACTCTTCCCTGGGAACTATGTGGAGAAGATCTGATTACTGCCTGTCCTGTGGCccaacaaacaatgtatacaacaGACATGACTATCCACTGTAAAGCAATGGTGAATTGCATATAAGCCTAACAGTAATTACAAGAGATATCTGATTTATAAGCGTATCAATAGAATCATCACCAGTTCTTTATAATATCTGCACAACAATATGAGTACAGAATAAGATGCATGTTGGAAAGCTAGCTGAAACAGAGAACCGTGACTTTCTTTTTCCAGTTTCACAAAAGAGGACAGCTTTGAGGTGCTAACTCAAAATAGGACGCAATGATTTTAtgcatattatttaaaaaattgctTTGTGATAACCCGTGTAACAAATGTAATGCCCTCAAGTGTAGAATAAAAAGCATCCCAGAAATTCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU486271 lncRNA downstream 42856 66208978 ~ 66210854 (-) True G429274
TU486251 lncRNA downstream 76656 66176799 ~ 66177054 (-) True G429255
TU486235 lncRNA downstream 90026 66163445 ~ 66163684 (-) True G429240
TU486242 lncRNA downstream 117314 66136148 ~ 66136396 (-) True G429247
TU486239 lncRNA downstream 130099 66123061 ~ 66123611 (-) True G429244
TU486348 lncRNA upstream 81533 66357533 ~ 66357785 (-) True G429342
TU486354 lncRNA upstream 89438 66365438 ~ 66366434 (-) True G429348
TU486308 lncRNA upstream 103720 66379720 ~ 66383789 (-) True G429304
TU486436 lncRNA upstream 205304 66481304 ~ 66482287 (-) True G429419
TU486412 lncRNA upstream 213555 66489555 ~ 66489780 (-) True G429395
XM_021603957.2 mRNA downstream 4482 66244380 ~ 66249228 (-) True acer1
XM_021603955.2 mRNA downstream 12572 66213497 ~ 66241138 (-) False mllt1a
XM_021603956.2 mRNA downstream 12572 66213497 ~ 66241138 (-) True mllt1a
XM_036978112.1 mRNA downstream 78587 66106837 ~ 66175123 (-) False rfx2
XM_036978116.1 mRNA upstream 5727 66281727 ~ 66329409 (-) False adamts10
XM_036978114.1 mRNA upstream 5727 66281727 ~ 66335345 (-) False adamts10
XM_036978115.1 mRNA upstream 5727 66281727 ~ 66335345 (-) True adamts10
XM_036976524.1 mRNA upstream 113023 66389023 ~ 66391922 (-) True LOC118964532
XR_002473579.2 mRNA upstream 238473 66514473 ~ 66521372 (-) False LOC110524386
TU484971 other downstream 871120 65370116 ~ 65382590 (-) False G428132
TU484709 other downstream 1242112 64999708 ~ 65011598 (-) False G427902
TU484689 other downstream 1342712 64905045 ~ 64910998 (-) True LOC110524332
TU484039 other downstream 1520738 64725927 ~ 64732972 (-) True LOC110524330
TU484034 other downstream 1547685 64701874 ~ 64706025 (-) False LOC110524330
TU486620 other upstream 511051 66787051 ~ 66789836 (-) True LOC110524398
TU488974 other upstream 1534605 67810605 ~ 67816544 (-) False lrrc7
TU488969 other upstream 1535486 67811486 ~ 67818124 (-) True lrrc7
TU489232 other upstream 2064204 68340204 ~ 68352745 (-) True bend5
TU489586 other upstream 2423821 68699821 ~ 68707448 (-) True G432310

Expression Profile