RNA id: XM_036978116.1


Basic Information

Item Value
RNA id XM_036978116.1
length 5127
RNA type mRNA
GC content 0.53
exon number 24
gene id adamts10
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 66281727 ~ 66335345 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGTCATCTGTTTCCAATAGTTTGCTACACTGCTTCCTTGAAAACCACCACAGGACCATTCATTCATCTCCTCTGTTTAAACACGCTCTAGAAGAACACCTTTCTAACCCAAAACTGAAACCAGCTCCGTTGATGATGGACGctACGTTCCTGTCTAGCCTGGGCCAGTATGAGATTGCCATCCCGGTTCGCGTGGGGCCGCAGGGCGAGACCCTGGACACAGGGGATGGGGGTGCAGACAGCCCCAACCACCACCGGCGGAGCCGCCGCAGTGCTGAGGACCAGCAACAGGACCTGTCCCAGCTGTACTACCAGCTCTCTACCCCCACAACCAACTTTCTCCTCAACCTGACCCTCCAGGGGGGCCTGCTGTCCCGTCAGTTCCGTGTAGAGTACTGGAGGAGGGGGCGTCTGGCCTGGAGCCACCCTTACGCCCTTCAGTGTCTCTATGTAGGCCATCTGCAGGATCAGCCCCACTCTAGCAAGGTGGCTCTCAGCAACTGTAATGGCCTGCAGGGGGTGATCGTGGCAGGGGGTGAGGAGTATATCATCGAGCCTCTGACCCCGCCCGAAAACCTCACGAGGGGGGAGAGCCGCCCCCATGTGGTCTACAAGAGGTCATCTCTTCGCCACCAGTACATGGACCAATCCTGTGGGGTCATCGATGAGAAGCCAGGGAAAGGTATGGCCTGGTGGCAGAGGACTCTGAAGACACCTCCCAACCCCATCGGCCGAGGCCAGCTGCCTCTGAAGAGGTCTGTGAGCAGAGAGCGCTACGTAGAAACACTGGTGGTGGCCGACAAGATGATGGTGGGGTACCACGGCCGCCGGGACATCGAGCAGTACATCCTGGCTGTCATGAATATTGTTGCCAAACTGTTCCAGGATTCTAGCCTGGGGAACGCAGTGAACATCGTGGTGACCCGTCTCATCCTGCTCATGGAGGACCAGccGACTCTAGAGATCAACCACCATGCAGGGAAGTCCCTGGACAGCTTCTGTAAGTGGCAGAAATCCATCCAGAACCGGAATGGCAATGGGAACGCCATCCCAGACAACGGCATCGCTCACCACGACACTGCCGTGCTCATCACCAGGTACGACATCTGCATCTACAAGAACAAGCCATGTGGAACCCTAGGTCTAGCTCCAGTGGGGGGGATGTGTGAGCCAGAGAGGAGCTGCAGTATCAACGAAGATATCGGGCTGGCCACAGCTTTCACCATCGCCCACGAGATAGGACACACGTTTGGGATGAACCACGACGGAGTGGGCAACGCCTGTGGCTCCCGCAGTCAGGAGACAGCCAAGCTGATGGCTGCacacatcaccatgaagaccaacCCCTTCGTCTGGTCCGCCTGCAGCCGAGACTACATCACCAACTTCCTGGACTCAGGTATGGGTTCATGCCTCAACAACGTCCCACCGAAGCAGGAGTTTGTGTACCCCACCACGGCCCCCGGCCAGGCCTACGATGCAGACGAGCAGTGCCGCTTCCAGTACGGAGTGAAGTCTCGGCAGTGTAAATACGGGGAAGTCTGCAGTGAGCTGTGGTGCATGAGCAAGAGCAACCGCTGCATCACCAGCAGCATACCCGCTGCAGAAGGAACCATCTGTCAAACCAATACCATAGAGAAAGGGTGGTGCTATAAGAGGGTGTGTGTGGCCTACGGGACCCGGCCAGAGGGCGTGGACGGCGGGTGGGGTCTCTGGACCCCCTGGGAGGAGTGCAGCCGTACCTGTGGGGGAGGAGTGTCCTCCTCCATCCGCCACTGTGACAGCCCCAGGCCAACGATTGGTGGAAAGTATTGTCTGGGAGAGAGGAAGCGCTTCAGATCGTGCAATATTGATGAGTGTCCTGCAGGCTCTCAGGATTTCCGGGAGATTCAGTGCGCCGATTTCGACAACGTTCCTTTCCGGGGGAAATTCTACACCTGGCAACCCTACAGAGGAGGTGCGTACAgtggagTGAAGTCCTGCTCTCTGAACTGCCTGGCGGAGGGATATAACTTCTACACAGAGCGTGCTCCGGCTGTGGTGGACGGGACCCCATGTCGGGACGACTCTCTCGATGTCTGTGTGAATGGAGAGTGCAAGCACGTGGGCTGTGACCGGATCCTGGGCTCGGATGTGCGGGAGGACCGCTGCCGTATCTGCGGGGGTGACGGGAGCAACTGTGAGGCCATAGAGGGCATCTTCAATGACTCCTTGCCTGAAGGAGGTTATGAAGAGGTGGTCAGAATCCCCAAAGGATCTACCTTCATTCATATTCAGGAGCTCAACATCTCCCTCAACTACCTAGTGCTGAAGAGTAAAGGGGACCAGTACTTCATCAATGGGAAGCTGACCATCGACACCCCTCGTAGGTTCGACATCACAGGGACCACCTTCCACTACCGCCGACCCACTGATGAGCCTGAGACCCTGGAGGCCCTGGGGCCCACCAACATGACCCTCATCGTCATGgtgctggTGAGGGACGAGAACCCAGGGATCCACTACCGCTTCAACCCTCCAGTCAACAGAGACCCTCTGACTGGATACGCCTGGCACTACACATCCTGGTCCCGCTGCTCCGCACTCTGCGCTGGGGgTGCTCAGATCCAGCAGGTCGTGTGTAAGAAGCAAGCTGATCACTCCGTGGTCTACAACCACTTCTGTGACAAGAAGAGCAAACCCAAAGACAAGAAGCGAGGCTGCAACTCTGAGCCATGCTCCCCAAGCTGGGGGTCTGGGGAGTGGTCTGAGTGCAGTCGCAGCTGTAACGGGGGCCTGAGGACCAGAGAGGTGCTGTGTAAGAGGAAGATCTCTCCTACAGAGGAGAAGGTGCAGGACGACGGCGCCTGTACCCCCCCAGGACCACCCCTCACTGAGCCCTGCAACAACCACACCTGCCCCCCAGAGTGGATGGCCCTGAACTGGTCAGAGtgtAATCCCAGCTGTGGTCCAGGGTTCAGGCACCGTGTCCTTCTGTGTAAGAGGGGGGAGAGTGGAGGCACACTGCCAGAGTCCCAGTGTCCCAAGTATGGGCGTCCCACCACCAGGGTGCGCTGTAACCTGCAGCGCTGCCCACCCCCCTTGTGGGTCACAGGGCCCTGGGGAGAGTGCTCAGCCAATTGTGGTCTGGGTCAGGAGATGCGCTCTGTGCAGTGTCTTGTACACACCGGCCAGCCGTCCAATGAGTGCCCAGACCTCCTGCGCCCGGCAGCCATGCAGCAGTGCAAGAGCAAATGTGACCTCAGCAGCCTACCCATGGACATCCCTGAGGGTGACCCTGAAGAGTGTAAAGATGTGAACACAGTGGCGTACTGCCCCCTAGTGCTCAGGTTTAAGTTCTGCAGCCGCCCCTACTTCAGACAGATGTGCTGTAAGACCTGCCAAGGACATTGACCCCTGATCCAGAGTGAGAACCAGACCCATACTCGGAGTCATCCCCAGCGGGACCAGACCAGACCGCCTGAGCTGAACATTCCACAGGGGGAGGGACTGACAAGCCATCGCACCACAGAGCAGCCTCTCTGACAtcaggggagggtgagagagagaactgtGCTTTTATCCCCCACTCTGAAATTGCCCTAACTGATACCAGCTGTGGGGGCATTGCTGTGAAGACCAGATGGGCTGCTGGGATACCGCTGTTTCTATGTCCTTATATCCTTATTAGCGTTTGGTGCTACTACCATTGCCATGCTGGCCACAGGACTGGCCAAAGTACTCTGTTCAGCTTAGTTACGTTTCTCTGCTGTTTATTAAGTGGCCCAATCTTACCCTGAGACACTGTCCATACGGACCTTTACTTGTATATTTACAGACGTTGCTCTATGTGTACACAATCTACACTGTACAAATGAAATTTACCTGATACTTTATCACTTACCAAATGTTAATGTTAGTTATCTGGTGGCTGGTGTCAACTCACGTGGTCTTCTTTGTTATCTTGTCAATGCTTTGTCTCAGAACTAAATCTTTATGAATTCTTATTAATATTATGCTTTTTGAAAAGGGTTTGATTTGCACAAAGTATGGCTACTCATAAGGATACTGTATGTTTAGTTATTTGGGACTTGTCTCGACGACTCTACTGAATACTAAGGTTCTCCATCCACGGTCCGGTCTATGCTCATAACCGTTTACTCACCACTGTCTTGTCATGGGACCCAGCAAGGGCTGGTCAATGGTCGGTTCAGTTCACATCTAGCAGCTAACCTCAACACATCTCTTATACTGTAGCCCTTACTGTACACATTTAGATACAGGCAAATGTACCGTGGCCTCATCAATGTGAAAAATGGTACATGGTTCTCTGTACTAGTCACGTATACAGTGAGTGAAAAAGTGTCCATCACTGAGTGAAACACTTCCAACAACCGATTAGATGGGAACAGAGACCCTCACATGTCCTCTGGTCTTAAGTGGTCCTTCTGTCTGATAGCAGGGCCCTGCTGCGCCTTTAATGGTCAGCCAGTTAACTTCGGTTTTTAATATGCTGCATGTACAGCGAAGGCCTTTTtccacatccatccatctactGAGCTCACACCAAGAACCAGCCCTTGCAATATGACCGCTCTGGTTTCTGTTGGAGTAACTAGGTTGTTATTACTCTCCTGATGGTGCTTTGGAATGGTGCTATTTCTTAGCTAATTATTGTCATTATTTGTTGTCATTCTGGTGAATATAAAGTGCTTTTGTTGAGGTGCTACATAAGTTTGTGAGAAGAGGAGAAGTTAACCCTTTATTTCCTTACCTACAGTAACTCAGTATGGGACAGACATAAGTTACCAAACATTCAGTCTCTTATAAAACTGGGTGTCAGCACACTGACTGATACTTTACTATCTCACAAAAACCATAACAATACTGTTTTAATAAAACATACTGTCTTATTTGACTGTCTAAATATGTAAGCTACATTTTCTATTTTGAACCATCTGTCTATGGTCATGGTGTGACCTCAGAGGCAAACCATTTTATCAAATATTAGGGAcaatattgttttgttttcagatGCTTATTGTTACAGATATGTACTGTTTTAATTACTACAGAAACATTCCCCCGTTCCCCATGTACAACCATTGAAATGAACATATTAAAGTGAATAAATATGGTGCATTGTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU486271 lncRNA downstream 70873 66208978 ~ 66210854 (-) True G429274
TU486251 lncRNA downstream 104673 66176799 ~ 66177054 (-) True G429255
TU486235 lncRNA downstream 118043 66163445 ~ 66163684 (-) True G429240
TU486242 lncRNA downstream 145331 66136148 ~ 66136396 (-) True G429247
TU486239 lncRNA downstream 158116 66123061 ~ 66123611 (-) True G429244
TU486348 lncRNA upstream 28124 66357533 ~ 66357785 (-) True G429342
TU486354 lncRNA upstream 36029 66365438 ~ 66366434 (-) True G429348
TU486308 lncRNA upstream 50311 66379720 ~ 66383789 (-) True G429304
TU486436 lncRNA upstream 151895 66481304 ~ 66482287 (-) True G429419
TU486412 lncRNA upstream 160146 66489555 ~ 66489780 (-) True G429395
XM_036978117.1 mRNA downstream 5727 66253710 ~ 66276000 (-) False myo1f
XM_036978120.1 mRNA downstream 5727 66253710 ~ 66276000 (-) False myo1f
XM_036978118.1 mRNA downstream 5937 66253710 ~ 66275790 (-) False myo1f
XM_021603957.2 mRNA downstream 32499 66244380 ~ 66249228 (-) True acer1
XM_021603955.2 mRNA downstream 40589 66213497 ~ 66241138 (-) False mllt1a
XM_036976524.1 mRNA upstream 59614 66389023 ~ 66391922 (-) True LOC118964532
XR_002473579.2 mRNA upstream 185064 66514473 ~ 66521372 (-) False LOC110524386
XM_036978133.1 mRNA upstream 325082 66654491 ~ 66659137 (-) False LOC110524385
XM_021603977.2 mRNA upstream 325082 66654491 ~ 66659138 (-) False LOC110524385
XM_036978132.1 mRNA upstream 337128 66666537 ~ 66676709 (-) True LOC110524389
TU484971 other downstream 899137 65370116 ~ 65382590 (-) False G428132
TU484709 other downstream 1270129 64999708 ~ 65011598 (-) False G427902
TU484689 other downstream 1370729 64905045 ~ 64910998 (-) True LOC110524332
TU484039 other downstream 1548755 64725927 ~ 64732972 (-) True LOC110524330
TU484034 other downstream 1575702 64701874 ~ 64706025 (-) False LOC110524330
TU486620 other upstream 457642 66787051 ~ 66789836 (-) True LOC110524398
TU488974 other upstream 1481196 67810605 ~ 67816544 (-) False lrrc7
TU488969 other upstream 1482077 67811486 ~ 67818124 (-) True lrrc7
TU489232 other upstream 2010795 68340204 ~ 68352745 (-) True bend5
TU489586 other upstream 2370412 68699821 ~ 68707448 (-) True G432310

Expression Profile