RNA id: XM_021603962.2


Basic Information

Item Value
RNA id XM_021603962.2
length 2735
RNA type mRNA
GC content 0.49
exon number 14
gene id LOC110524376
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 66340581 ~ 66349235 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACTGGGTCAGCTGTGTCAGATGGTTGTAAATATTGAAATGGtgctatttttttatttctgCCTTTTCATGAAACAAAAGGTAGTATAGTAGAAAGGGTTTCATGTAGCTGAGGTGAGGAAGTAGCTTAGTGAAGATTCCAGGGCTGTATCAATCAACCCACATAGTTTTCCTGAACCCCCACTCGTGCCCTCACTCAGCAGTGCTGATGCATATTCTCTGTCACCTATACAGATTGACAGACTcagcagctctctgtctctgaggcCAATCTACTAAGATCTCTGACTTCTTTCCTCAGTTCCAGTGAAATAGTGTATGGCATTTTCCACTTGTTATCAAATAAAGCTACCTCACAGCAGAGCAGACACCAGCTGCTTTGATGATCTTTAATCAGGAGCTTCCAGACATCTCCAACCCTTCCAACTGAGGAGTCTTCCCTCGTACTTCCTGAGGAGACTCAGACATGGCGACAGACCCTGCGACAGAACTGCCATTCTTCTACGGCAGCATCAGTCGCTCGGAGGCTGAGGAGCACCTGAAGCTGGCAGGCATGGCAGACGGGCTGTTCTTGCTGCGCCAGTGTCTGCGGAGCCTGGGTGGCTACGTGATCTCCCTGATATGGGACCTGGACTTCCACCACTACTCTGTGGAGAAACAACTCAATGGCACCTACTGTATTGCGGGTGGCAAGCCCCACTGTGGGCCAGCGGAGCTCTGTGAGTTCTACAGTAAGGACTCAGATGGCCTGGTGTGCAACCTGAAGAAGCCCTGTCTGCGCTCACCAGACAACCCCATTAGAGCAGGCGTATTTGATAACCTGAGGGACAACATGCTGAGGGAGTATGTACGACAGACATGGAACCTGGAGgGGGAGGCCATGGAGCAGGCCATCATCAGCCAGGCCCCACAGCTGGAGAAGCTGATCGCCACCACTGCCCATGAGAGGATGCCCTGGTACCACGGCAAGATCCCTCGCCAGGAGGGGGAGAGGCGACTCTATTCCAGGGCACAGCCAGACGGAAAGTTCCTagtcagagacagggaAGAGTCCGGCACCTTTGCCCTTTCTTTGGTGTACGGAAAAACGGCCTACCATTACCAGATCCTACATGACAAATCAGGGAAGTACTCCATGCCAGAGGGAACCAAATTTGACACTGTGTGGCAGCTGGTTGAGTATCTTAAGATGAAGCCTGATGGGCTAGTGACAGTTCTGAGGGAACCATGTGTGAACCGCAACAATGCCAAACAGACTCCGGTTGTGCCCTCAGGGAGGTTGTCCAGAACAAATAGATACACACCGCCACCTGGAGTACCTCTGGGGGGCTCCACGGAAGTCAACACTTCGCCCCCCACAGACCGTCAGATGCTGCCCATGGACTGCAGTGAATTTGTCAACCCTTACCATGACCCCAATGACCTGAAGAAGTTCTTCATCAATAGGGAGCAGCTGATGATTGACGAGGTGGAGCTCGGCTCAGGCAACTTTGGCTGTGTCAAGAAAGGAGTTTTCAAGACAAATAaGGGCCACACGGATGTGGCCATCAAGGTGCTGAAGAGTGAGAATGAGAAGCTGGTGAAAGATGAGATGATGAGGGAGGCGGAGATCATGCACCAACTGAGTAACCCTTACATCGTCCGCATGCTGGGGCTCTGCCAGGCTGAGTGCCTGATGCTGGTGATGGAGATGGCTTCTGCTGGGCCACTCAACAAGTTCCTCTCCACCAATAAggATAAGGTCACAGTGGAGAACATTGTGGGGCTGATGCACCAGGTGTCTATGGGAATGAAGTACCTGGAGGAGAAGAACTTTGTGCACAGAGACCTGGCAGCTCGCAACGTCCTGCTGGTCAACCAACAGTTCGCCAAGATCAGTGACTTTGGCCTGTCCAAGGCTTTGGGTGCTGATGACAACTATTACAAGGCACGCACTGCAGGAAAATGGCCGCTGAAGTGGTATGCTCCAGAATGCATGAATTTCCACAAATTCTCCAGCAAGAGTGATGTCTGGAGCTTCGGTGTCACCATGTGGGAAGCCTTTTCTTTTGGAGGGAAACCATACAAGAAAATGAAAGGTCCTGAGGTGATCAGTTTCATTGCCAGTGGGAGCCGCATGGAATGTCCATCTGGATGTCCAGATAAAATGTATGCTCTGATGAAGGACTGCTGGACATACAAACACGAGGACCGGCCAGGCTTTGTGAAGGTGGAGGAGCGCATGCGAGGCTTTTATTACTCTATATCCAACAAAACTCTGCCTGAGGGGACCACAGACGCTGCTGAGCCTCTCAAATAGTCCAGGGACAAGATACACTCTGTCCCCGCACCACACAATGCATTCTTTGAGACAGACAATGAGCCTCTTATGAACTGGGAACAAGCTGACGGCTTCAGAAACAGGCAGCAACAGTAAACAGCTAAACAAGCCTTATTGACGCAAATGTGAGTCTGTAATGAAAGTAATTCATATTACAACAGCCTTTTTTATTAGCTCAGGACTGCATCATTTGTTGGTTTGAATGTTTTGGAAGAAACTAAAAAAAAATGGTACATGTTAGAATTGTAAAACTGCATATTGAAAGTGTAATTCCCTGAGAATATAATTAGGTCTAGTGTGAATTCTGTTTCTATTTATGTGCTTTAGCTCTCTATACATTTGTTAACACGTCATGATGAATAAAACATGTCACAGAATATGGTGTATGTATATCAAGTAATTGAAGAAATTACTTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU485784 lncRNA upstream 9121 66330913 ~ 66331460 (+) True G428822
TU485767 lncRNA upstream 28835 66310817 ~ 66311746 (+) True G428805
TU485766 lncRNA upstream 31121 66307570 ~ 66309460 (+) True G428804
TU485765 lncRNA upstream 31882 66307570 ~ 66308699 (+) False G428804
TU485723 lncRNA upstream 45169 66268550 ~ 66295412 (+) True G428763
TU485807 lncRNA downstream 14318 66363553 ~ 66363813 (+) True G428841
TU485886 lncRNA downstream 149125 66498360 ~ 66498598 (+) True G428912
TU485892 lncRNA downstream 157044 66506279 ~ 66506618 (+) True G428918
TU485896 lncRNA downstream 160667 66509902 ~ 66510264 (+) True G428922
TU485826 lncRNA downstream 307500 66656735 ~ 66658029 (+) True G428857
XR_005051834.1 mRNA upstream 92233 66240540 ~ 66248348 (+) True LOC118964639
XM_021603954.2 mRNA upstream 129725 66183663 ~ 66210856 (+) False acsbg2
XM_021603953.2 mRNA upstream 129725 66192693 ~ 66210856 (+) True acsbg2
XM_036978111.1 mRNA upstream 234015 66059094 ~ 66106566 (+) True fcho1
XM_021603949.2 mRNA upstream 282421 66053964 ~ 66058160 (+) False znf692
XM_021603964.2 mRNA downstream 338 66349573 ~ 66355573 (+) False mob3a
XM_021603965.2 mRNA downstream 1092 66350327 ~ 66355573 (+) True mob3a
XM_036978121.1 mRNA downstream 16284 66365519 ~ 66383789 (+) True mknk2b
XM_021603967.2 mRNA downstream 51861 66401096 ~ 66412427 (+) True rexo1
XM_021603968.2 mRNA downstream 81036 66430271 ~ 66433596 (+) True LOC110524380
TU485654 other upstream 197976 66142079 ~ 66142605 (+) True G428696
TU484533 other upstream 819201 65453856 ~ 65521380 (+) True G427747
TU484228 other upstream 1311879 65024715 ~ 65028702 (+) False LOC110524338
TU486149 other downstream 632714 66981949 ~ 67048164 (+) True G429156
TU487389 other downstream 1111494 67460729 ~ 67464143 (+) False LOC110524407
TU487402 other downstream 1111494 67460729 ~ 67464323 (+) True LOC110524407
TU487928 other downstream 1753944 68103179 ~ 68103534 (+) True G430796
TU488020 other downstream 1863481 68212716 ~ 68214104 (+) True LOC110524423

Expression Profile