RNA id: XM_021603969.2


Basic Information

Item Value
RNA id XM_021603969.2
length 2896
RNA type mRNA
GC content 0.45
exon number 11
gene id csnk1g2b
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 66434671 ~ 66480586 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGCAAGGATAACAGTAGGAGTAAAGATGACGCTGAATGTTTGCTTATCGGCTGGGAGACTTAAAGAGACAGCAAGACCTAGCGAGGGAGAAAATATAAAATATCGTAAATACATGGCCATGTTGATACGTCCAATTTGAAAATACACGTTGACAGataTCCAACTTAACAAAACTCTACTGCAGTATCTCATCATCATTGTTGACTCTGCCTCCACCATTGCCCCTTCCGCCGTGGCACTGGAACATGAAGAATGTCTGCTGTATTACCAAAGACTGACCAGAAGGACGCAATGAGGGGCTCCGGGGAAAGTTGCCAAGCTGTGTTGTGGATCCAGTAGCTGGGATTCCAAGTgcttgttgtgtttgtgtgtgcgtgggtgcatGCTAGCACAACCTGCCCACTTCAGGCCGGGACATGCTACTCTGAGACAGGAGTTGGACAAACAGAGAAGAAAGGAGTCGACTACCATAAACAAGAAGGGGACAGCACGCGGTACAACATTGGCAgatagacatactgtgtgttttggtTGCAGTTTTACCCCTGTGGAAGTGGCTTTTAATACACTGCATATTTCTATACAACACCTTTCCTCTGTCTTTGTATCACCTTCCCCCTCCCTTAAGAGTCCTGGTTGTTTTGGCCCCTCTGTGATTTGCATGGCCGGAGAGTAATCGTGGAGAGGCCAGGGTATCACAAGCTTATGGATTTTGACAAGAAAGGGAgtaaaggagagacagaggaagggaaaaAGATGTCTAAGGCAGCTGGCAGCAGGACTGGACATGGGGGCCGGGGTACAGGGACCAACTCTGGGGTTCTTATGGTTGGCCCAAACTTCCGTGTCGGAAAAAAGATTGGCTGTGGCAATTTTGGAGAGCTGCGGCTGGGGAAGAACCTCTACACCAACGAATATGTGGCCATCAAATTGGAACCGATAAAGTCACGGGCTCCACAGCTTCACTTGGAATATAGATTTTATAAACAGTTGGGAAGTTCAGAGGGTATTCCTCAGGTGTACTACTTTGGGCCATGTGGGAAGTACAATGCCATGGTGCTGGAGTTGTTGGGGCCCAGCCTGGAAGACCTGTTTGATCTCTGTGACCGTACCTTCTCCCTCAAGACCGTCCTTATGATAGCCATACAGCTGATAACGCGGATGGAGTTTGTCCACACAAAGAGCTTGATATACAGAGACGTGAAGCCAGAGAACTTTTTGGTGGGGCGGCCGGGCAGCAAGAGGCAGCACACAATCCACATCATCGACTTTGGGCTGGCCAAAGAATACATCGACCCCGAGACCAAAAAACACATCCCGTACCGGGAGCACAAGAGCCTGACAGGCACGGCGCGCTACATGAGCATCAACACACACCTGGGGAAAGagCAAAGCAGACGGGATGATCTGGAGGCTCTGGGTCACATGTTTATGTACTTCCTGCGAGGCAGCCTTCCCTGGCAAGGCCTGAAGGCAGACACTTTGAAGGAGAGGTATCAGAAGATTGGAGATACCAAGCGAGCTACTCCAATTGAAGTGCTTTGTGAAAGCTTCCCCGAAGAGATGGCCACCTATCTGCGTTACGTGAGGAGGCTGGACTTCTTTGAGAAACCTGATTATGACTACTTACGGAAACTCTTCACTGACCTCTTCGATAGGAACGGCTATGTCTTTGATTATGAATACGACTGGGTCGGCAAGCCACTTCCTACACCGATAGGCCCCATCCCCAGTGACACACCCGCTCAGCCCAGCAGAGACAAAGCACAACAGCAGACCAAAAACCAGGTGATGAGCTCGACAAATGGAGAGTTGAACACTGACGACCCGACGGCAGGACACTCCAACGCTCCCATCACTGCTCCCACCGAGGTGGAGGTGGCTGACGATACAAAGTGCTGTTGTTTCTTCAAAAGGAGAAAGAGGAAACCCCTCCAGCGGCACAAGTGAAGAGAAGAACTTGAAACATTCTGGTCACTGTCAAGTTTTGAATGGAAGCAACTACACAGATCACCCATCTTATCTCTTTCccaatctctctttctttctctcttctctctctcagcactccCCTGCTACAGACGTGTAAAGGAATGTTGTCTTTCAGACTCTggctcctttaaaaaaaaaagaaagaaacattTGAAAGTACCTGCATAGTAAAGGGAGATTGAGAGAACGTTAAAAGCTGTAAAAATGAAACGTGAATACCGTGACGTGAATATATAAAAAAAGATACTGTTTGAAACAGTTGTTGTATTTTAGATTCCATACAGAACATTTTCTGTTCAACAGCCATTGATCTGAGAGAAATGTCAATGAGTCGAGGGAAAGAAATCTGTTCCATAGAAATAGTCCTTTATTTATGGGATCAAGGTAAGAAGCAAGAATGAACAATACTAACTCTGGAATCACTGAACGCAACAGGAAGCATTTCATCTAAACCAGAATTGGAGGATCTTTATGcattttttcccttttttttgtaatttaatcCTCAGTAGTTTTCAAAGTTGACTTCCTGGATTGAAAACAAACTTTTACTTTTATGTTGTAGTATTTCTGGAAATCTTTGTAGCACAGTCACTGGCCTCAGGTACTGTGGAAGATTGAAAGAAACAGATATTAAGCTCTTTTCTTATTATTGcacttttgaaagaaaataaagtACAGTGGAATTCTAGGTTTGAAATGAACAAACAAGAAAACAACAAAATAAAGACTGATCTAGGAATAGTCCTATACAATGCTTAAATCTGAGTAAGGGCCGAAATGTCAATCTCCATGAAACAAGATGTCTTTCAGTTTTATTTCTTACATCAGAATAATTAACCAGGAAATCATagtttgtgcctttccaagtaAAATGTTTAAAGCTCAAGTAAGTGTCCTGCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU485807 lncRNA upstream 70858 66363553 ~ 66363813 (+) True G428841
TU485784 lncRNA upstream 103211 66330913 ~ 66331460 (+) True G428822
TU485767 lncRNA upstream 122925 66310817 ~ 66311746 (+) True G428805
TU485766 lncRNA upstream 125211 66307570 ~ 66309460 (+) True G428804
TU485765 lncRNA upstream 125972 66307570 ~ 66308699 (+) False G428804
TU485886 lncRNA downstream 17774 66498360 ~ 66498598 (+) True G428912
TU485892 lncRNA downstream 25693 66506279 ~ 66506618 (+) True G428918
TU485896 lncRNA downstream 29316 66509902 ~ 66510264 (+) True G428922
TU485826 lncRNA downstream 176149 66656735 ~ 66658029 (+) True G428857
TU485975 lncRNA downstream 190659 66671245 ~ 66697999 (+) True G428992
XM_021603968.2 mRNA upstream 1075 66430271 ~ 66433596 (+) True LOC110524380
XM_021603967.2 mRNA upstream 22244 66401096 ~ 66412427 (+) True rexo1
XM_036978121.1 mRNA upstream 50882 66365519 ~ 66383789 (+) True mknk2b
XM_021603964.2 mRNA upstream 79098 66349573 ~ 66355573 (+) False mob3a
XM_021603965.2 mRNA upstream 79098 66350327 ~ 66355573 (+) True mob3a
XM_021603974.2 mRNA downstream 1976 66482562 ~ 66490073 (+) True LOC110524383
XM_036978126.1 mRNA downstream 39251 66519837 ~ 66634272 (+) False LOC110524384
XM_036978124.1 mRNA downstream 41212 66521798 ~ 66634272 (+) False LOC110524384
XM_036978125.1 mRNA downstream 41212 66521798 ~ 66634272 (+) False LOC110524384
XM_036978127.1 mRNA downstream 41212 66521798 ~ 66634272 (+) False LOC110524384
TU485654 other upstream 292066 66142079 ~ 66142605 (+) True G428696
TU484533 other upstream 913291 65453856 ~ 65521380 (+) True G427747
TU484228 other upstream 1405969 65024715 ~ 65028702 (+) False LOC110524338
TU486149 other downstream 501363 66981949 ~ 67048164 (+) True G429156
TU487389 other downstream 980143 67460729 ~ 67464143 (+) False LOC110524407
TU487402 other downstream 980143 67460729 ~ 67464323 (+) True LOC110524407
TU487928 other downstream 1622593 68103179 ~ 68103534 (+) True G430796
TU488020 other downstream 1732130 68212716 ~ 68214104 (+) True LOC110524423

Expression Profile