RNA id: XM_036978127.1


Basic Information

Item Value
RNA id XM_036978127.1
length 3441
RNA type mRNA
GC content 0.48
exon number 11
gene id LOC110524384
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 66519837 ~ 66634272 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTACTTTGTTTTTCGTGGATTTAACGGGTATTGCTGGACACAGGGATTCAGGGTTACTGCTTCTTTAAGTTCTTTTGGGGGATGGGCTATTTTCATAACGTCATTTCATTCCTCCCtctttttcattttgtcattctTTGATTCTTTTTCTCCCCCCATTTCCTAAATGGAACAGATTGCCCGAGCCTTTTCATTTCCCAGCTTTCCCAATTTTTATTCAAAGTTACTCTTTTTATTTTTCAGGATTATTAAGTTGAACTTTTCTTCTGTGTCATCATTTTTGGAGGGCTAACACCTTAGTGGACGTAAACTGCAAGTCAATTGAGGCGATGGTGGAGGCGtttatggtgatgatgatgatgatgaactgTAAAAGAATGATTCACTAACTTGTCTGTCTTTTGCTACCTGACAAGTCGATATAAATTCATTTTCATCATGAtgtactctcctctctgtcttacTCAGGATGAGTTTCATCCGTTCATTGAGGCCCTACTGCCGCATGTGCGTGCCTTCGCCTACACCTGGTTCAACCTGCAGGCGCGCAAACGCAAGTACTTCAAGAAGCACGAGAAGAGGATGACCAAGGAGGAAGAGCGTGCAGTGAAGGACGAGCTGCTGGGAGAGAAGCCCGAGGTCAAGCAGAAGTGGGCGTCGCGGCTGCTGGCCAAACTCCGCAAGGACATCCGGCCCGAGTGCCGCGAGGACTTTGTGCTGTCTATCACAGGGAAGAAGACCCCCTGCTGCGTCCTCTCTAACCCTGACCAGAAGGGCAAGATGAGGAGGATCGACTGCCTGCGTCAGGCCGACAAGGTGTGGAGGCTGGACCTGGTCATGGTCATCTTGTTCAAGGGCATCCCGCTGGAGAGCACGGACGGAGAGCGCCTGGTCAAGGCTGGGCCATGCAACAACCCCATCCTCTGTGTCCAGCCACACCACATCAGCGTCTCGGTCAAGGAGCTGGACCTCTACCTGGCCTACTTCGTACAGGAGAGAGaGTCAGAGCAGAGCAGTAGCCCACGCACAGGTATTGGGTCAGATCAGGAGGATAGCCGAGCTGCCACCATGGATGCTCCTGAGTTTCAGGAAAGCTTTGTGACATCAGGAGTTTTTAATGTAACAGAGCTGGTGCAAGTGTCCAGAACTCCGGTGGTGACGGGGGCAGGCCCTAACTTCTCTCTGGGAGAGCTGCAGGGGCACCTGGCCTATGACCTTAACCCCTCAGGGGTGGGCATGAGGAGAACCCTGCCCAGCACCTCCTCCAGCGGGAGTAAGAGGCACAAGTCAGGCTCCATGGaggatgatgtggacaccagtcCTGGGGGGGAGTACTACACCTCTCCCAACTCCCCGGCTAGCAGCTCCCGCAACTGGCAAGAGGATCTGGAAGGAGgcATGTCCCCTGGAGTAAAGAAGACAGAGATGGACAGCCCGTCTCCTCAGGAGAGCTCCCCACGTCTCGGCTTCACACAGCACCACCGGCCCGTCATCGCAGTGCACAGtggGATTTCTCGGAGTCCGCACCCCTCCTCGTCGTTGCACTTCCCCACCACCTCCATCCTGCCCCAGTCCACTTCCTACTTCCCCCACACCGCCATCCGCTACCCGCCACACCTCAGCTCCCAAGACCCGCTGAAGGACCTGGTCTCCCTGGCCTGTGACCCGTCCAACCAGCAGCCCAGCCCAcTGAACGGCAGTGGTCAAGTGAAGGTGCCCAGTCACTACATCTCCTCCCAGATGCTGGCGCCTCCTCCGCCCCCTGGAATGCCCCGACTGACGCTGCCCTCCGACTCCAAGTCCAGCACCACCACCTCGGACGGGGGAGCCAACTCCCCCACGTCACCCAGTAAGTGGGCCGCTGcatacTCAACTCCTGGGACGCCCCCTGCCAACCGCTCCTTTGTTGGGATCGGACCTCGAGACCCTGGCTCACTCTACCAGGCACAGTCCTGGTACCTGGGGAACTAAACAACACAAGGATCATCGAAAGGGGCAGGGACACATGGATTTGAGATTCAACACTTTTTGTGGAATTAAGAAAATTGCAAATGAGATGCAAGAGggaaagtgtatatatatatataaatatatgtgtgcatatatatttatgtatatcaACATAAAAGATGCTTCAACACACCTTTTTGGAATGCAAgacaagaggcagagagagcaacgccaaggaaagaaagagaaaaggtTTGTGCAGCCAAAATGAACGGTGGGGCAGAGACATGACCCTGTCTCCAGGATAGTACCCCTCCTCTTTAACACCCCCCCTCTGCTACAGGTGCTGCTTCCTCATATATGCAAAATAAGCATCCTTTATTTTCTTAATCAACAAGAGAAGAATCCGGATCCAGTAATTATACTTTTCCACACTTCTTCGGAGATGGTAAAACAACAACTCTGTGAAAGTAGTTAGGGGAGGCTGGTCACACATGGTCAATAACCTCCCTTTACCCATGAAGAGTCTACTTTTCATCCAGTTTGATTGACAATCCTGTATCTGTGTCAGTTACTTTGTTTTAAAGAGTGGGGTATTTTTAAGATTTCATTTAACACAGCCCATTTGTCATGTTTAAAAGTGTCTTCTATGAGGCACAGTGATATGCATACACAATCAAAAGGATCTGTCTTTAGAGCAGTAGAGAGCATCGTAAAAAAAGACAGGTACTGTAACAGGTGTGTTAGTTTTCACAATAACTGATACGCCCTCTTGTGCCTGTCAACTGTTGTCTGTTTGTTTAGACATTTGTTTGTGTTTGCATACGATTCAAGCATGGTGAaacctcctcttcctatccttgCCCCACTCTTGAGTTAATATTGCATAAAGTTTGTATTAATGTAGATAACAGGGGTTTATTCTGCATAGTGACAAAGGGAGTACAAAAATAGTAATGTCACTATTGAGACAGTATTGGGTGTAGAGGGGAGAATCTTTCTTTTTTTGTGTATTTAGTTGAAATTGCATTGGACATTACAGGCATTGCACTACTATAATGTAAATGTTTTCCTTTTTAGCAGCTATCCCTTGGCCTAATCATATAAAATGTTGCAAGTCAGAGGTGGGTTTTAGGATTATGTTGTAGAAACTACTATGTTGTGTTGCTTTGGTAGCAGGGTATAAGAGTTATGAGTGTTGGCTTTCTTGAGCTATCGATTCGGATCAGAACAATCCAGCCCTGTTGTGTTTCAGATATTCTATACTCATCTAGAGGACGTTTCCTTGTGTATGTTGAGGTACAGGGAATCCTGACAGGTTTAGGTAATCGCACCCTTTTGGATCTCTTTCTACATTCTGTGTATCTAAGTCACACTTTTATTATCTTACTCATGCTGTCTTTATATAATCGAAAACAAAAAAGCAATTTATGAATCTTTTTTTAAAGCAGATCACGTACTTTGGATGAGTCGAGAAGAATGTGAATGATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU485896 lncRNA upstream 11534 66509902 ~ 66510264 (+) True G428922
TU485892 lncRNA upstream 15180 66506279 ~ 66506618 (+) True G428918
TU485886 lncRNA upstream 23200 66498360 ~ 66498598 (+) True G428912
TU485807 lncRNA upstream 157985 66363553 ~ 66363813 (+) True G428841
TU485784 lncRNA upstream 190338 66330913 ~ 66331460 (+) True G428822
TU485826 lncRNA downstream 22463 66656735 ~ 66658029 (+) True G428857
TU485975 lncRNA downstream 36973 66671245 ~ 66697999 (+) True G428992
TU485984 lncRNA downstream 73275 66707547 ~ 66707778 (+) True G429001
TU486016 lncRNA downstream 118963 66753235 ~ 66753453 (+) True G429028
TU485818 lncRNA downstream 150665 66784937 ~ 66785516 (+) True LOC110524392
XM_021603974.2 mRNA upstream 31725 66482562 ~ 66490073 (+) True LOC110524383
XM_021603971.2 mRNA upstream 41212 66434671 ~ 66480586 (+) False csnk1g2b
XM_021603979.2 mRNA downstream 42556 66676828 ~ 66704143 (+) False osbpl1a
XM_036978130.1 mRNA downstream 42556 66676828 ~ 66704143 (+) False osbpl1a
XM_021603978.2 mRNA downstream 42557 66676829 ~ 66704143 (+) False osbpl1a
XM_036978131.1 mRNA downstream 47497 66681769 ~ 66704143 (+) True osbpl1a
XM_036978138.1 mRNA downstream 134742 66769014 ~ 66776718 (+) False LOC110524391
TU485654 other upstream 379193 66142079 ~ 66142605 (+) True G428696
TU484533 other upstream 1000418 65453856 ~ 65521380 (+) True G427747
TU484228 other upstream 1493096 65024715 ~ 65028702 (+) False LOC110524338
TU486149 other downstream 347677 66981949 ~ 67048164 (+) True G429156
TU487389 other downstream 826457 67460729 ~ 67464143 (+) False LOC110524407
TU487402 other downstream 826457 67460729 ~ 67464323 (+) True LOC110524407
TU487928 other downstream 1468907 68103179 ~ 68103534 (+) True G430796
TU488020 other downstream 1578444 68212716 ~ 68214104 (+) True LOC110524423

Expression Profile