RNA id: XM_036978132.1


Basic Information

Item Value
RNA id XM_036978132.1
length 2061
RNA type mRNA
GC content 0.46
exon number 5
gene id LOC110524389
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 66666537 ~ 66676709 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tataaatgtgaagcattcACTTCGCTTTTCTACTCACTACTAAAAATTGTAGTGGGAGGAATtccagtggccggcagtgggagaagattgaacgagatggattttggccgataTTCTGCAACTTGTCTTattgatgaaacatttgatctcagtACAGTTTTATGTTCCCAAAACTAAaatatgttatgaacagagtggactgaGTTTTGTAGACTAACCTTTGCCAAGTTTTTTTGTCGCGTTGTTTAGGAGCGCAAAGGCGAATTTAGTTTTTGCATACGTGCACTTCCCTAACGGAAAACAGGCACATCTCCACAGTAAATTAGTTTTCTTTCGCCCAAAGTTGCCAACATACCACGTGCGTCCGTCACTCAGTGCATGAGTAACAACTATccattacgaaacttctattcgatcaaataaacctcacgtAGCAAATTAGCAATTATATATTTTGTTcaccaaattcgacactcattgACCTCCTTACAAAAATTCCTCACTTTGTGGTCTTATTTTCGTGGACCGAATTTGGGCAGAGTAAACCCTCTCGGGTCGACTCATCCTCTCTGCTTTGTGCCTGTGGAACTTTCTtgtttgtccatgtgggaaataTGAAGTGCTGCTTGTAGCGAACTGTTCCAGAAAATTCAGTGAAATACAGTAGCTACAGCCATTATTATTCTCAGAATGGCAAGTGAGCAGGAGGTGGCAGCAGTGGGAAAAATTCTGGTCAACCCAAAGCAGGACCTGACAACACGGTTCAGAGCACTCTTCACTCTGCGTAACGTGGGTGGACCAGAGGCAATAGAATGGATCAGTCAGACTTTTGTGGATGATTCTGCTCTGTTGAAACATGAGTTGGCATATTGCCTGGGTCAAATGCAGGATGAGAGAGCCATCCCCACGCTAGAGACTGTTCTGAAAGACACAACACAGGAGCCTATGGTCAGGCATGAAGCAGgggAAGCATTAGGAGCTATTGGGAACCTCGAGGTCCTTGACATACTGAAAGAGTACTCTGAGGACCCAGTCATCGAGGTGGCAGAGACGTGCCAGTTGGCTGTCAGGCGGCTGGAGTGGCTGACATCTGGTGGGGACCAGAACGGAGAGGAGGGCACCGACGGAAACCCTTACTGTTCTGTGGACCCTGCTCCCCCAGCCCAGAGGAAGACTGTCCCTGAGCTGAGGACACAACTCCTGGATGAGAGCCTGCCACTGTTTGAGCGCTACAGGGCCATGTTCGCCCTCCGCAACCTGGGCACCGAGGAGGCTGTCCTGGCTCtaggagatgGTCTTCAGTGTAGCAGTGCCTTGTTCCGCCATGAGATTGGCTACGTCCTGGGTCAGATCCAGCATCCAGCCAGCATCCCCCAGCTGCAGGCAGCTCTGGAGCTGGACGGGGAGAATGCCATGGTGAGGCATGAGTGTGCAGAGGCCCTGGGATCCATTGGCAAGGAGGAGTGTATGAAGATCCTGGAGCGCTACAGGAAAGACACAGAGCGCGTGGTGAAGGAGAGCTGTGAGGTAGCCCTGGACATGCTGGAGTATGAGAACGGCACACAGTTCCAGTACGCTGACGGACTACTACGACTGCAAGGGGAGCAGTGAGGGCCAAACGGCAAGCATGGACATTGGAAGCTAtaggagaactgctatacagcaCTGTAAGAGCTTTCCGCAGATGTCCTAACTCATGATCACTTAGACCCATTTTCATTCATTGAAACGATCTTGACTCTTGCCAGTGATTGTTGGCCTCTGAGACAAGGCAGTGTAATAATGATATTACAGTGCATTCAGCCATGTTTTAGTTTGTTTATTCATTGTTTTCATGGAAGCTACATGAATAAATTGTCAAGATAATGTAATGCTTTTCCCCCTAAGCTCAGTGAACCATTCACATTTATCTTTAATTCAGAATGATTTGATAAGCATCTGAAATCCGAACCTGATTTGTCAATCAAGATTGTTAATCCACTTTTCTGCTCTGTCATTCGCATTTAATTTTTAATCTCAAATGAAAATAAAGGCTTAGGTAATAACATTGAGACAATACAA

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0008612 peptidyl-lysine modification to peptidyl-hypusine biological_process
GO:0046872 metal ion binding molecular_function
GO:0019135 deoxyhypusine monooxygenase activity molecular_function

KEGG:

id description
K06072 DOHH; deoxyhypusine monooxygenase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU486502 lncRNA downstream 10154 66653328 ~ 66656383 (-) False LOC110524385
TU486503 lncRNA downstream 10154 66653328 ~ 66656383 (-) False LOC110524385
TU486504 lncRNA downstream 10154 66653328 ~ 66656383 (-) True LOC110524385
TU486480 lncRNA downstream 122476 66543793 ~ 66544061 (-) True G429457
TU486407 lncRNA downstream 146219 66514545 ~ 66520318 (-) True LOC110524386
TU486594 lncRNA upstream 31566 66708275 ~ 66708915 (-) True G429556
TU486601 lncRNA upstream 43612 66720321 ~ 66720537 (-) True G429563
TU486603 lncRNA upstream 52651 66729360 ~ 66738133 (-) True G429565
TU486611 lncRNA upstream 64361 66741070 ~ 66741457 (-) True G429572
TU486613 lncRNA upstream 68179 66744888 ~ 66748852 (-) True G429574
XM_021603977.2 mRNA downstream 7399 66654491 ~ 66659138 (-) False LOC110524385
XM_036978133.1 mRNA downstream 7400 66654491 ~ 66659137 (-) False LOC110524385
XR_002473579.2 mRNA downstream 145165 66514473 ~ 66521372 (-) False LOC110524386
XM_036976524.1 mRNA downstream 274615 66389023 ~ 66391922 (-) True LOC118964532
XM_036978114.1 mRNA downstream 331192 66281727 ~ 66335345 (-) False adamts10
XM_036978134.1 mRNA upstream 44053 66720762 ~ 66736749 (-) False LOC110524390
XR_002473580.2 mRNA upstream 44053 66720762 ~ 66736749 (-) False LOC110524390
XM_036978135.1 mRNA upstream 45550 66722259 ~ 66734081 (-) True LOC110524390
LOC118964717 mRNA upstream 75417 66752126 ~ 66764500 (-) True LOC118964717
XM_036978152.1 mRNA upstream 110128 66786837 ~ 66792056 (-) False LOC110524398
TU484971 other downstream 1283947 65370116 ~ 65382590 (-) False G428132
TU484709 other downstream 1654939 64999708 ~ 65011598 (-) False G427902
TU484689 other downstream 1755539 64905045 ~ 64910998 (-) True LOC110524332
TU484039 other downstream 1933565 64725927 ~ 64732972 (-) True LOC110524330
TU484034 other downstream 1960512 64701874 ~ 64706025 (-) False LOC110524330
TU486620 other upstream 110342 66787051 ~ 66789836 (-) True LOC110524398
TU488974 other upstream 1133896 67810605 ~ 67816544 (-) False lrrc7
TU488969 other upstream 1134777 67811486 ~ 67818124 (-) True lrrc7
TU489232 other upstream 1663495 68340204 ~ 68352745 (-) True bend5
TU489586 other upstream 2023112 68699821 ~ 68707448 (-) True G432310

Expression Profile