RNA id: XM_021603978.2


Basic Information

Item Value
RNA id XM_021603978.2
length 4783
RNA type mRNA
GC content 0.44
exon number 29
gene id osbpl1a
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 66676828 ~ 66704143 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGTTTAGTTTACCATATGAAATGGAAGGACTCAAATGATTAAAGTAAAATGCCATAATCACTCACGTCGATAATTAATTAATAGCTTGTATTGGAAAATATTGAAGCGTTGGAAAGtaaattaattaattatatgGTAAGTATATCCCAGAAGAATAACACATGCATTGTACTACGCTATACAATTTGAGTAGAAACAGGTCTATGATTTACATAGGGTACAGACGTATTAATATCAAATGAATGTAATCAGAGGAGCATTTTTGATAATGCAACACTTGCCCGGGACAAGTGCGCGTGCACATCGTGAATACCTTAGATCAGCTGATCACTGTAAACATAGATGTGTGACACGCTCGCAGTTGGCACTTATCAATTGTCGTTGTAATTAAAGGCTGAAATGCAGGATGCTTGATACAGTTCCCAACTATGTGGCCTGCTGATCTGACTTGTGATGTAGGTAGTTTATGCGTATTGCGAAACACTTTCACCCGAGAGCGCACAAAACAGGAAGAGTTCCAACCGAGGGATTAGAAAATCACATGCTAATGGTAACCTAGCCTACTTCTGAAGAAATTGAGCAGCAAAGACTGCGAAAACAATCCCCCGGCTGAAGGACGCCCGCAGAACGATTTTTACGTTATCTATGGAGGATCTGGATCCAGAAGACCAGTTTCTGCGTCATGCCAGAAATGGGGATCTTGCAGGCATCCAGAAGCTTCTCATGTCCAAGATTAAAGAAGAGGCcaacctcaacatcaactgcaaAGGTAAGAGTAAGTCTAACCTGGGATGGACACCTCTCCACCTGGCCTGTTACTTTGGACACAGAGCAGTGGTGGAGGAATTACTCAAGGCAGGAGCAGATGTTAATTTGCCCAATAATGTAGGAGACACACCACTGCACAAAGCTGCCTTCACCGGAAGAAAGGAGGTTGTCATGCTGCTGCTAAGCTATGATGCATGTGCCACTGTCATCAATGGAACAGCACAGATTCCCAAAGATGTCACTCAGAATGTGGATATCAAAAACATGCTGGGAGCGgcggagaggacagaggagcgaAAACTAGAAGAAGAGCTTTTAGAcgcagcgagagagggagacctTTCGACCCTGTCACAGCTGCTTAACAGGAAAAAGCCTCCAGACATGAACTGCTGTGATCTCTTGGGTAACACCCCACTGCACTGCGCTGCCTACCGTGGTCAGAAGCTATGTGCCCTGAAACTGCTAAAGAAGGGTGCTAGCCCCAACATCAAGAACAAAAATGATCAGACTGTGTTTGACCTTGCAAACAACACAGAGATAAAGCAGATTCTGGAAAGCAATATTCATAAAGGTATGACTCACCATGTCCAGATGTTTGAAGGAGCCCTTTGGAAGAGTTCCCGGTTTTTAGGCTGGCGTTCCTACTGGGTGGTCCTCCAAGATGGGGTTCTGTCCTGGTACTCTAAACAgTTGGATGCAGCTGCCAATGTCCGAAGACAAGGCTGTAAGCCCCTGACCCAAGCCCATTGTTTGATCAAAGCTAGAGACAACTGCTTTTTCACACTCAAGTGCTTTGATGACAGTGTGCATCATTTCAAAGTGTCCCCCAAGAATGACCCCGAGGCAACAAGAAAAAGGTGGATGGATGCTATGGAGGAACACTCTGCCTACAGTACACACTACTGCTCTCAGGATCAGGGCagcgaggaggatgaggaagaagtCTTGAGTGTGGGAGAGCTGACGGAATCATTACAGTCAGCTGAAGCTTGTCACCAGAAGCTGGAGAAGGAGGTTGGAGCATTCCTCTCCTTGGTAAAAGAAGATGGACTTGCTGAGAAGCTGCCACCCGTGATGCTGCAGAAGATGAAGGAGGTGTGTGAGCTGTCCAGTGAGACCTACTCTAATCTCAACCACTGCCTCAGCCTCTTCTCCAGACAGGATGGGGTGCGCAGTCTGAAATTGGAGCAGGAGGTGGAGAAGAATAAGATCCTGTCTGAAGCGTTACAGACTCTGGCTACAGAGCACCACGAACTTGAGCAGTCCGTTGTCACAGGCTCTTCTCCACAGGGCGCGCTCAGTGAGGATGACTTCCACGACGCTGTGTCTGACTCTGAATCGGAGCACTCTCTGAGCGGCTTTGAGACGGTGGCCAGCCATTCATTCGACGAGGAAGGCTCTGTCCTGTTCAGCAGCGAGCGCAGCAGCCCTACCAACATGTCTCGAGAGGATCACCATCAGGATGAGTCCCAACCCAATGGGATCGTGAGGCACAGAACAAGTTTACCAGCACCCATGTTCTCCAGAAATGACTTAAGCATCTGGAGTATCCTGAGGAAATGCATTGGCATGgagCTGTCTAAGATTACCATGCCAGTGATTTTTAATGAGCCCCTGAGCTTCCTGCAGCGTCTGACAGAGTACATGGAGCACACGTACCTCATCCACCAGGCCAACGCCTCCTCTGACTCCATAGAGAGGATGAAGTGTGTGGCAGCGTTTGCTGTTTCTGCTGTGGCTTCCCAGTGGGAGAGAACTGGAAAACCTTTCAACCCGCTACTGGGAGAGACCTACGAACTGGTCAGAGAAGACCTGGGGTTCAGGTTGATCTCAGAGCAGGTGAGCCACCACCCACCAGTCAGTGCGTTCCACGCCGAAGGCCTGAAGAAAGACTTTGTGTTCCACGGctccatctaccccaaactcaagtTCTGGGGAAAGAGCGTGGAGGCTGAACCCAAAGGCATCATCACACTGGAGCTGCCCAGGTATAATGAGGCCTACACATGGACAAACCCTACATGCTGCGTCCACAACATCATTGTGGGGCAGCTGTGGATTGAGCAGTATGGCAACTTGGAGGTTCTCAACCACAAAACTGGAGAAAGATGCTGTCTGAATTTCAAACCCTGTGGCCTTTTTGGCAAGGAATTGCACAAAGTTGAAGGCTACATTCTGGACAAAAGCAAAAAGAAGGTCTGTTCTCTCTATGGAAAGTGGACAGAGTGTATGTACATAGTGGATTCTGCTGCATTGGAGGCACATAAGAGAAGTGGGAAGAGGGCAGAGGAAAATAAAAGCTGTAAACAGGGCTctggtgaggaggtggaggagatccCCCTACCAGAGGCTGACACCGTAGAGGTGATCCCAGGCAGCCAGCTCCTGTGGAGGATAGCCCCAAGACCAGAAAACTCTATAGAGATGTACAGCTTCACGTCTTTTGCCATGCAACTGAATGAGCTGGATAAGGATATGGAGGGGCTCATCCCAAAGACAGACTGCAGGCTGAGGCCAGACATACGAGCCATGGAGAACGGAGATATTGATCTTGCAAGTGAGGAGAAGAAGAGGctagaagagaaacagagagctgcACGCAAAACCCGTTCCAAATCTGATGACGAGTGGAAAACAAAAAACCCTGCCCTTGGCCCCAGGTGGTTTCATCAGGGTCAGAATCCCCACAACGGCTACCAGGACTGGTTGTTCTCCACTGGCTACTGGGACCGCAACTATTCTCTATTACCTGATATTTATTAATGGACACTAATGAACATTCCTTGAATAGTGAGATTTATTCTTATCCACGTCAACTTCCTTATCTATTATGTGATTACATTCCACTAATTCATTTTTTTAGACCAGTTAATTACATCCAATATGCAAATAGGAGATTAATACAATAAAGTCTTAATTTATTACAATTAAAATACTGTGTATGAATATAACAATAATTGATGATTTTGTAATACAAAATGTTCAGCTGTTAAACATGCTTAAAAATGTAGCATTCGGTCACATTTCATGCAGCCATTTTAGATCATTTACTTTTTAGCACGTGTATTCACTCCATTGTAGCTTGGTTGACAGGGGTACATGATTTGAGTCGCTGTTTTGTTTTAACTTCATGATGCAGTGCTTTGATTGTGTATGGTGTGATCTATCATACAGTATTCTATTTGCACAAGCCTACAACCTTGGCCCTTTAGGAACATACACTATCCACATACTAAATCTGTTGCTCTTAATGTAATGTACAGCTGTTTTGTGTTAACAACTTCATAAAATGTTTGTTACAAAAAAGAACTGCACTCACATAATGTACATATTCTCAGTGGTTGGGATTTTTTTGTTAGTTTATAACACTTTCTTTACTTATATTTTAGTATTATCCCACAGCTCAACTGTTGCTGATCCTCATTCCCATGACTTTTTAGTCCTTCAATGCTCACATTCATTTGTGAGGTCACTGATTGACTGATGCATAACACAGTGGATTGTTAATATTTTGGTCGATTGCTCCATTGATTGTAGGAAGAAAAAAATTATGATCATCACTACAAGATCTGCTCATGACAATCATTGCGGGGGAAAATTAACTCATCTCTAAAGGTTATGGTAGTTACATGTTTTATGCACAATTCCTTTCCATTACATTTTTCAGAGCAGCTATGCAATTATCTAAACAGAGGACTATCCCTGTCTATTCTCTAACAGCTGTCATTTTACATTCCTCTTTTCAACTGTGAAGGGATCCTATAGGACATGGGTCATAATAGAGAATAATCTAAGTTATGGACTGTTATGTAATTTAACAATAGGGCTAGTGTAATATGGTTGTGAGACTTTGTATCATGGTTATAGGGGGGAAACCCTGTTATCAAGTTATCTGGTACTTTGAAGTTATCTGAGAAAATGTATGCAGAGGTAGTACAATACAGTTATTAGCATGACCCTTTAACTTGGTAAATAATGAGTATAATAAAATAACTAACTTCTAAATGTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU485826 lncRNA upstream 18800 66656735 ~ 66658029 (+) True G428857
TU485896 lncRNA upstream 166565 66509902 ~ 66510264 (+) True G428922
TU485892 lncRNA upstream 170211 66506279 ~ 66506618 (+) True G428918
TU485886 lncRNA upstream 178231 66498360 ~ 66498598 (+) True G428912
TU485807 lncRNA upstream 313016 66363553 ~ 66363813 (+) True G428841
TU485984 lncRNA downstream 3404 66707547 ~ 66707778 (+) True G429001
TU486016 lncRNA downstream 49092 66753235 ~ 66753453 (+) True G429028
TU485818 lncRNA downstream 80794 66784937 ~ 66785516 (+) True LOC110524392
TU486059 lncRNA downstream 136554 66840697 ~ 66884634 (+) True rpp21
TU486092 lncRNA downstream 182040 66886183 ~ 66886424 (+) True G429102
XM_036978124.1 mRNA upstream 42557 66521798 ~ 66634272 (+) False LOC110524384
XM_036978138.1 mRNA downstream 64871 66769014 ~ 66776718 (+) False LOC110524391
XM_036978137.1 mRNA downstream 64873 66769016 ~ 66776718 (+) False LOC110524391
XM_021603985.2 mRNA downstream 64874 66769017 ~ 66776718 (+) False LOC110524391
XM_021603986.2 mRNA downstream 64874 66769017 ~ 66776718 (+) False LOC110524391
XM_021603983.2 mRNA downstream 64875 66769018 ~ 66776718 (+) False LOC110524391
TU485654 other upstream 534224 66142079 ~ 66142605 (+) True G428696
TU484533 other upstream 1155449 65453856 ~ 65521380 (+) True G427747
TU484228 other upstream 1648127 65024715 ~ 65028702 (+) False LOC110524338
TU486149 other downstream 277806 66981949 ~ 67048164 (+) True G429156
TU487389 other downstream 756586 67460729 ~ 67464143 (+) False LOC110524407
TU487402 other downstream 756586 67460729 ~ 67464323 (+) True LOC110524407
TU487928 other downstream 1399036 68103179 ~ 68103534 (+) True G430796
TU488020 other downstream 1508573 68212716 ~ 68214104 (+) True LOC110524423

Expression Profile