RNA id: XM_036978134.1


Basic Information

Item Value
RNA id XM_036978134.1
length 2924
RNA type mRNA
GC content 0.48
exon number 15
gene id LOC110524390
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 66720762 ~ 66736749 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGGCGGGCCCGGAGCAGTCCCAGCAGGTAGAGCAGAAAGCTGAGCCCATAGACGACGCTGAGCTCGCTCTTCAAGGTATCAACATGCTTCTCAACAACGGATTCAAGGAGAGCAACGAGCTTTTCAGAAAATATAGGACTCACAGTCCACTGATGAGCTTTGGGGCCAGTTTTGTCAGCTTCCTGAATGCCATGATGACCTTTGAGGAGGAGAAGATGCAGACGGCGTGTGACGACCTGAGAACCACGGAGAAGCTGTGTGAGAGTGACAACGCTGGCGTCATAGAGACAATCAGGAACAAAATCAAGAAGAGCtTGGAGTCCCAGAGGTCAGCGGTCGTGGTTGTGGACCGCCTGCAACGACAGATCATTGTGGCCGACTGCCAGGTTTACCTCGCTGTGCTTTCCTTCGTCAAGCAGGAGCTCTCATCGTACATCAAAGGAGGCTGGATCCTCCGTAAGGCCTGGAAGATGTACAATAAGTGCCACAGTGACATCAGTCAGCTGCAGGAGACCTGTGTGAGGCGCTGTTCCTCCCATGAGGAGGATCTGTCCTCAGACCAGGCCAATCACAACTCCCCAGTGGAGGGTGCTGTGACTGAAGAGGCCCTGGACCGGCTCAAGGGCTCCGTCAGCTTCGGCTACGGCCTCTTTCACCTCTGCATCTCTATGGTACCACCACACCTACTCAAGATCATAAACCTGCTGGGTTTCCCTGGTGACCGTCTCCAGGGTTTGTCCTCCCTCATGTATGCCAGTGAGAGTAAGGACATGAAGGCCCCACTAGCTACGTTGGCCCTCCTGTGGTACCACACAGTAGTGCTGCCCTTTTTTGCACTGGATGGTTCTGACACTCAGGCAGGCCTGGAGGAAGCCAAGGCCATTCTGCAGAGGAAGGCTGTGGTCTACCCCAATTCCTCCCTCTTCATGTTCTTTAAAGGACGTGTTCAGAGGTTAGAGTGCCAAATTAACAGTGCGCTCGTGTCCTTCCATGATGCACTAGAGCTGGCATCAGACCAAAGAGAGATCCAGCACGTGTGTCTCTATGAAATCGGCTGGTGCAGTATGATAGAGATGAACTTTGAGGATGCATTCAGGTCATTTGAGAGGCTGAAGAATGAGTCCCGGTGGTCCCAGTGTTACTATGCCTACCTGACTGGAGTATGTCAGGGAGCTGCAGGGGACTTGGATGGTGCCAAGTGTGTCTTCAAAGATGTCCAGAAACTGTTCAAGAGGAAGAACAACCAGATTGAGCAGTTTGCCCTTAAGAGGGCGGAGAGACTGAGGAAGATGTCTCCCACCAGAGAGCTGTGCATTCTGGGAGTCATAGAGGTGCTGTACCTGTGGAAGGCTCTGCCCAACTGCTCCTCCTCCAAACTTCAGCTCATGAATCAGGTGTTACAGAGTGTGGATGACGCATCGTGCAGGGGTCTGAAAAACCTCCTTCTTGGTTCCATTCACAAATGCCATGGAAATAATAAAGATGCTATCCAGTCGTTCCAGCTGGCAGCCAGAGATGAGTTTGGTCGACAGACCAACTCTTATGTGCAGCCATACTCCTGCTATGAGCTTGGATGTGTCCTGCTTGCCAAGCCAGAGACGGTGGGAAAAGGGAGAGCTTTTCTGCTTCAGTCAAAGGAGGATTATGCAGGCTATGACTTTGAGAACAGACTTCACGTGCGCATCCACTCAGCCATGGCCTCGCTGAAGGAAGTGGTACCTCAAAGACCCGCCGACCACTGATagaatttggcagtacatgcaaccggcctcacaaccgcagaccctgtgtaaccacgccagcccaggacctccacatccggcttcttcacgtgcgggatcgtctgaggagggaaatgggggggagggggtatgtgctgaggagtatttgtcTCTGTAATAAAGCCTTAATATGTGGGAAAAAAACTCATCCTGAatggctgggcctggcttcccagtgggtggacctggctcccaagtgggtgggcctatgccctcccaggcccacccatggctatgcccctgcccaatcgtgaaatccatagattagggcctattgaatttatttcaataGAGTGATTTCCTTctactcagtaaaatctttgaaattgttaaatgttaaattaaattgttaaatgaacatgccatactaataaaggcattttaattaattatatgaagagtgccttggtcctcctttctttttgatgaccaatttaccccttttaccaaagagcaccttctgtctaccaaaatgtactattgtgtaccttagtagcgcttcccttcctcctctttctacttgTTAAATGTTGCGTTtctgtttctgttcagtatacatgaaGGGGGATATAAACGGTCTTTGCATCTGGTGCTTGTCAAATGTGGAATAACTCTTTGCCACCCTTCATATAGCATGGTATATtattatgaatgatttctgaaacATCTATATAGGCCTTGTGGTAAAGGGCTTGTGAAGGCTTCAACATGCTATGTTTCCTTTAAAGTGGGACTCTTTTTTTCATGTTCAAGGTTGTTTTTGAACATTGTTTTATCTACACTAAAGTCAGTCACTGACCTCCCATCTTTTCCTGTGATTGTGTAAAGGGATGTAAGATGTGGTGTGATGTATACCTTTTGACTACTGAGTGTGTGACCAGTAAGTGCTGGTATAAAGGAAGTTCACAGCTGTAAGAGAAAAGTGTATTAGAATGACATGTAATAAATAATGAGTTAAATGTCATTATATGTATACCAAAAAACGGGGACATTCCTTTCTTAGAAATGTGTTCTATCCACTTTGTTGTGGGGTTGTGGAGGATTATGTGGATAGAGATGGTTACATTGTAACAGGAAGTTGTTCCTATGTGGTGTCAGAGCCCTACATACTGTTCAATAAAGTGTTGTCAATTAATTCTGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU486601 lncRNA downstream 225 66720321 ~ 66720537 (-) True G429563
TU486594 lncRNA downstream 11847 66708275 ~ 66708915 (-) True G429556
TU486502 lncRNA downstream 64379 66653328 ~ 66656383 (-) False LOC110524385
TU486503 lncRNA downstream 64379 66653328 ~ 66656383 (-) False LOC110524385
TU486504 lncRNA downstream 64379 66653328 ~ 66656383 (-) True LOC110524385
TU486611 lncRNA upstream 4321 66741070 ~ 66741457 (-) True G429572
TU486613 lncRNA upstream 8139 66744888 ~ 66748852 (-) True G429574
TU486631 lncRNA upstream 18376 66755125 ~ 66755342 (-) True G429588
TU486636 lncRNA upstream 24631 66761380 ~ 66761635 (-) True G429593
TU486642 lncRNA upstream 30944 66767693 ~ 66767896 (-) True G429599
XM_036978132.1 mRNA downstream 44053 66666537 ~ 66676709 (-) True LOC110524389
XM_021603977.2 mRNA downstream 61624 66654491 ~ 66659138 (-) False LOC110524385
XM_036978133.1 mRNA downstream 61625 66654491 ~ 66659137 (-) False LOC110524385
XR_002473579.2 mRNA downstream 199390 66514473 ~ 66521372 (-) False LOC110524386
XM_036976524.1 mRNA downstream 328840 66389023 ~ 66391922 (-) True LOC118964532
LOC118964717 mRNA upstream 15377 66752126 ~ 66764500 (-) True LOC118964717
XM_036978152.1 mRNA upstream 50088 66786837 ~ 66792056 (-) False LOC110524398
XM_036978155.1 mRNA upstream 50088 66786837 ~ 66792066 (-) False LOC110524398
XM_036978154.1 mRNA upstream 50088 66786837 ~ 66792136 (-) False LOC110524398
XM_021603995.2 mRNA upstream 50088 66786837 ~ 66792430 (-) False LOC110524398
TU484971 other downstream 1338172 65370116 ~ 65382590 (-) False G428132
TU484709 other downstream 1709164 64999708 ~ 65011598 (-) False G427902
TU484689 other downstream 1809764 64905045 ~ 64910998 (-) True LOC110524332
TU484039 other downstream 1987790 64725927 ~ 64732972 (-) True LOC110524330
TU484034 other downstream 2014737 64701874 ~ 64706025 (-) False LOC110524330
TU486620 other upstream 50302 66787051 ~ 66789836 (-) True LOC110524398
TU488974 other upstream 1073856 67810605 ~ 67816544 (-) False lrrc7
TU488969 other upstream 1074737 67811486 ~ 67818124 (-) True lrrc7
TU489232 other upstream 1603455 68340204 ~ 68352745 (-) True bend5
TU489586 other upstream 1963072 68699821 ~ 68707448 (-) True G432310

Expression Profile