RNA id: XM_021603983.2


Basic Information

Item Value
RNA id XM_021603983.2
length 1617
RNA type mRNA
GC content 0.47
exon number 10
gene id LOC110524391
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 66769014 ~ 66776718 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACAGAGCACCACACGGAATTGAGTCAGTGAGCAGACAGAGCGCCATACGGAATTGAGTCAGTGAGCAGACAGCGCGCCAGTCTGTGTGGCTGGAGCGGCACTGCAGAGGATATACATAGGCTGCGTGTTGTTTTTCCTTCCGCGCGCCAACACCCCGGGAGAAGCCACAACAAATAGTCcaaacaaatacattttagacAGTTATTATAGTAATATAAGGGCATCACAATTTTTTGCATACGCAAGAAAGATGAGTCACGAATGAGGTCTGCAGGATGTCGTTCAAGAAGGAGACTCCCCTTGCTAACGCCGTGTTTTGGGCAGCTCGTAAGGGGAACTTGGCCCTGCTTCAATTACTGCTCAACAGTGGTCGTGTGGATGCCGACTGCAGAGACAGTTTTGGCACCACAGCCCTGATGGTGGCGTCCTACAGCGGCCACTATGACTGTGCCAGGGAGCTGATCATGCAGGGAACTGACATTAACCTGCAGAGAGAGACAGGCTCCACTGCCCTCTTCTTTGCTTCCCAGCAGGGACACAATGAAGTAGTGAAGCTGCTCTTTGAATTTGGTGGCTCAACTGAATTCCAGACAAAGGACGGTGGCACAGCCCTCTCTGCAGCCTGCCAGTATGGCCACTCTAAGGTGGTGGACACTCTGCTGAAGAACGGCGCCAATGTCCATGATCAGCTGCATGATGGTGCCACTCCACTCTTCCTTGCTTCACAGGAGGGTCATGTGACTGTCATACGTCAACTTCTGTCATCTGGAGCCAAAGTTAACCACCCTAGGGAAgaTGGCACAGCCCCCCTGTGGATGGCAGCCCAGATGGGACACAGTGAAGTAGTGAAGGTTTTACTTCTGCGTGGTGCAGATCGGGATGCTGACAGAAAAGACGGGTCAACTGCACTATTCAAGGCAGCTTTCAAAGGACACAACGCTGTCATTGAGGAGCTCCTCAAGTTCTCCCCTTCATTGGGCCTTCTCAAGAATGGTTCCACAGCCCTCCACGCTGCTGTCATGGGTGACAATCATAAAAGTGTAAACCTTCTGCTGGGGGCCAACGCAGACCCCACACTACCCAACAAGAACAATGAACTGCCAGCAGATCTTACAAAGAGCAATCGCATCCTGAGGGCTCTGCGACCGCACATCTTAAATGGAAGTAGTTGATGACAACCCTAGTTGTCCATGGTTAGACCATGACCGCAAACCTTAGACTATGGTTGTTTTATGGAGAGAAATGCACTGAGGGCTCCGAACAACAGAGAACAAACCATCAGGATTCAGTCACACAACAATAATATTAATATGGTGCTTGTTTTCAATTACAGCTTCAGACAATGTTATTTGGAGTAACCATAACTGGATATAGCTAAAAGGATGGTTATATATGTAGCCTACTACAAAAATGTATCCGTTTGTGGCAATAGTTATTTTGCCATGCGTGCCCTTACCTTTGAGGTGTTGTTATAACTTTGCTGTATAGTTTCTGTTTATAAAACGTTTTATCCCTGGTGCTGTAATATTTCTAAATATTTAGCCTTTTTTTTCTTCCATATTAATAAATGTAAACTGTAAATGTGTTAAATAAAATAGGAATGTGAAATAACTGTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU486016 lncRNA upstream 15565 66753235 ~ 66753453 (+) True G429028
TU485984 lncRNA upstream 61240 66707547 ~ 66707778 (+) True G429001
TU485975 lncRNA upstream 71019 66671245 ~ 66697999 (+) True G428992
TU485826 lncRNA upstream 110989 66656735 ~ 66658029 (+) True G428857
TU485896 lncRNA upstream 258754 66509902 ~ 66510264 (+) True G428922
TU485818 lncRNA downstream 8219 66784937 ~ 66785516 (+) True LOC110524392
TU486059 lncRNA downstream 63979 66840697 ~ 66884634 (+) True rpp21
TU486092 lncRNA downstream 109465 66886183 ~ 66886424 (+) True G429102
TU486093 lncRNA downstream 110942 66887660 ~ 66887884 (+) True G429103
TU486825 lncRNA downstream 295073 67071791 ~ 67072079 (+) True G429767
XM_021603979.2 mRNA upstream 64875 66676828 ~ 66704143 (+) False osbpl1a
XM_036978130.1 mRNA upstream 64875 66676828 ~ 66704143 (+) False osbpl1a
XM_021603978.2 mRNA upstream 64875 66676829 ~ 66704143 (+) False osbpl1a
XM_036978131.1 mRNA upstream 64875 66681769 ~ 66704143 (+) True osbpl1a
XM_036978129.1 mRNA upstream 134746 66521798 ~ 66634272 (+) True LOC110524384
XM_036978136.1 mRNA downstream 100 66776818 ~ 66785521 (+) False LOC110524392
XM_021603989.2 mRNA downstream 458 66777176 ~ 66785521 (+) False LOC110524392
XM_036978148.1 mRNA downstream 15904 66792622 ~ 66800072 (+) False LOC110524394
XM_036978147.1 mRNA downstream 15986 66792704 ~ 66800072 (+) False LOC110524394
XM_021603992.2 mRNA downstream 15993 66792711 ~ 66800072 (+) False LOC110524394
TU485654 other upstream 626413 66142079 ~ 66142605 (+) True G428696
TU484533 other upstream 1247638 65453856 ~ 65521380 (+) True G427747
TU484228 other upstream 1740316 65024715 ~ 65028702 (+) False LOC110524338
TU486149 other downstream 205231 66981949 ~ 67048164 (+) True G429156
TU487389 other downstream 684011 67460729 ~ 67464143 (+) False LOC110524407
TU487402 other downstream 684011 67460729 ~ 67464323 (+) True LOC110524407
TU487928 other downstream 1326461 68103179 ~ 68103534 (+) True G430796
TU488020 other downstream 1435998 68212716 ~ 68214104 (+) True LOC110524423

Expression Profile