RNA id: XM_021603996.2


Basic Information

Item Value
RNA id XM_021603996.2
length 2122
RNA type mRNA
GC content 0.39
exon number 7
gene id LOC110524398
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 66786837 ~ 66793995 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAGGCAGTTAGCTAAGTTTGTCGTCTCAGGGCTTTGAAAAACAGCGTTCCACAATTAATATTTTAGATACAAGTATGGAATgtgtaacgtaaactcaccccattccgtacaaatgtgcgcaactgcgacattcaaacgaggctgcaaagaaaactaatgggactgtgttGACTTaaaaatctggggtgtgaacaACGTTTCTATTTAAGCGTTGATCgtcatgAGTGACCTAAGGATGTCGATTGTGAAAAGTGGCTTCCTTCATCGGCAGAGCACTATTCTGCGGCGGTGGAAGAGAAACTGGTTTGACCTGTGGTCTGATGGGTGGCTGGTATTCTTTGATGACCAGCACCGGCGAGATATGGAGGATGGGATCCACATGAGAGTGGACAGCATTAACATTCGCAGTGCAACTGCATGTCAAGATCTGAACCCACCAGAGGGCAGGAGTCAAAATGCCCTGCTCCAGATAGTCTGCAGAGACGGACGGGTCATCAGCATTTGTGGAGACAGTGCAGATGATGTTTTTGCATGGACCATGGCTCTCCAGGATGCCAGAGTAAACTCTGTTTATGTCCCGGACATTTATGGAGGCTATGCCCCAGGTCCTCCTCATGGCACACAGATAATTTATTCAGCAGATGGGCAGCCTAATGCGGTTGTATACCCCTATCAGTACCAAGGAGCATATCCTATGAGGGATCCACAAGGAATGGACCAGGTTATTGTTCACGAGCGTCAACGTGATGATGGAGGAGACGTGGCTCTCAGTATGCTCGCTGGAGCTGTGACTGGATTGGCTATTGGGTCTCTGTTTGTCTTCTAGTGTGTTCATTGGAACAGTTTACAACGATACCTATCCCTAACTGACACGCACCATTCCCACATTTTTGCAGCACTGCAGCTGCATTTCTGTAGCCATGTGACAGAGATGGAGGAGTTACATGTATGTGATGGTTGGGCTATGTTCACCTATGAGGCTTGATTGTGATGTGCCAGTAAATTACTCCTTTTGTGCCCTTACCAAAGCTTTTGATGTATATTAATGCCGTAGCGCTTTCTATTAGGCACAGTAGCTATTTTGCAGCTTGCCTTTTTTTGTTTGAAGAAACACAAATGATGTGATATTTTATGCACATCTGAAGAAAAGGTTTTGATATATTTAAACTTATTTTTATCCTTTTCAGGTCTCGCAAATGTAAATTCTTCTAACATTAAGAGTGGGACTAGAGTTTTTTTATTGGAACATGCCTGAGCTTGTAAAATCCTGATTCTTCACTTTACACATCTGTCTTAAATCCAATGTCCTTATGAGGCTTTTCACTCATTTTTCATCTACTTTGCATTTGAGATTTCACTTGCCTTTATTTGGTTATTGTCATTCCTTGAACATGGAAGGATATTGGATATTTTTGGAAGTGAATCTAGGATTTATGCTCTAGGATTATTGCTTGGTTTTCCTATTACTTCATTGTCAGCTGTTGAACCATGTCTTTTGTTTTATCTCACCTCAtgtgagaggtgaggaggagatgcaTGTGTAAACTAGAGTATGCACAAACATCCAGGCGAATCTTACATTTAAAGCTGCTACAACAGAGAACTGAATGATACTCCTTGACATTTCAATTGTTTTGACTTTACGCCACTCCTAAAATCATTtttaaatatgtatatttttcatGTTAATGATATTTATGGATATTTATTGAGTCATTACATTATGTGCTCTTTGTTTAACTGGATATGTTAATTAGTTAACATGTGAGTGGCCTCTTTGTCGCTGAACACATCAGCCACTGGTTTTTCACCTTTTATATTCAATTTCAAAGTCTTATTTAACTCTTACACCACCTTGTACAGACATTTGGAATACTAGATTGTGTTTCCTTTTTAGACATGAGCGTTGTATACAATAATTGATAACAGATTATATTTATTTGATATCAAATGAAGTAGAGCTTTATGGGGCAAACTGCTTTCATGTAATCACAAAACCATTATACCTTACATTTCAAATGGAAAACATTTTGTTATGCAGAATTAATGCAGTGTTTATTGCTCTTTAGCGATTGAATGACATTTTAACAATTTACTTATTAAATGATTAAATCCACATGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU486625 lncRNA downstream 1347 66784937 ~ 66785490 (-) True G429583
TU486642 lncRNA downstream 18941 66767693 ~ 66767896 (-) True G429599
TU486636 lncRNA downstream 25202 66761380 ~ 66761635 (-) True G429593
TU486631 lncRNA downstream 31495 66755125 ~ 66755342 (-) True G429588
TU486613 lncRNA downstream 37985 66744888 ~ 66748852 (-) True G429574
TU486621 lncRNA upstream 17075 66810013 ~ 66812758 (-) True G429580
TU486660 lncRNA upstream 45238 66838176 ~ 66839233 (-) True G429617
TU486664 lncRNA upstream 89104 66882042 ~ 66882304 (-) True G429620
TU486663 lncRNA upstream 90974 66883912 ~ 66884643 (-) True aqp12
TU486761 lncRNA upstream 185949 66978887 ~ 67057675 (-) True ankmy1
LOC118964717 mRNA downstream 22337 66752126 ~ 66764500 (-) True LOC118964717
XM_036978134.1 mRNA downstream 50088 66720762 ~ 66736749 (-) False LOC110524390
XR_002473580.2 mRNA downstream 50088 66720762 ~ 66736749 (-) False LOC110524390
XM_036978135.1 mRNA downstream 52756 66722259 ~ 66734081 (-) True LOC110524390
XM_036978132.1 mRNA downstream 110128 66666537 ~ 66676709 (-) True LOC110524389
XM_021603994.2 mRNA upstream 6690 66799628 ~ 66801724 (-) True cep19
XM_021603999.2 mRNA upstream 90751 66883689 ~ 66885402 (-) False aqp12
XM_021604002.2 mRNA upstream 262721 67055659 ~ 67068645 (-) False ankmy1
XM_021604007.2 mRNA upstream 718514 67511452 ~ 67513336 (-) False LOC118936331
XM_036978164.1 mRNA upstream 718514 67511452 ~ 67513347 (-) True LOC118936331
TU484971 other downstream 1404247 65370116 ~ 65382590 (-) False G428132
TU484709 other downstream 1775239 64999708 ~ 65011598 (-) False G427902
TU484689 other downstream 1875839 64905045 ~ 64910998 (-) True LOC110524332
TU484039 other downstream 2053865 64725927 ~ 64732972 (-) True LOC110524330
TU484034 other downstream 2080812 64701874 ~ 64706025 (-) False LOC110524330
TU488974 other upstream 1017667 67810605 ~ 67816544 (-) False lrrc7
TU488969 other upstream 1018548 67811486 ~ 67818124 (-) True lrrc7
TU489232 other upstream 1547266 68340204 ~ 68352745 (-) True bend5
TU489586 other upstream 1906883 68699821 ~ 68707448 (-) True G432310
TU489614 other upstream 1957279 68750217 ~ 68755057 (-) True G432338

Expression Profile