RNA id: XM_021603994.2


Basic Information

Item Value
RNA id XM_021603994.2
length 1526
RNA type mRNA
GC content 0.38
exon number 2
gene id cep19
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 66799628 ~ 66801724 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTAAGGACCCATTCCAATATGCGGTTCATAATGAAGACAGACAAACATATATTATTCTCATATTTAAATTAATTGCGATAACTACATAGAAAATCTTAAAACGGTGAAGACATTTTTTTTTGACCTACTGTGAACAAAAGTAGAAGCCATCTTCAACCCATAGCGCACAGGCAATTGGAGTGTAGCCCAAGATTTGGACGAGGTTTGAGAAACTAGCTGGGTCGATTCGTTTGATTTTTTTGCGTGCCTGCCTTTCagtattttgtttattttcaaaACTCAAGATAGTATACATGTCAAACATGTTTGCGAGCTAATTACCTTGCGAGGTACTTTGATAAATCTACATAAAACGTTTGTATAAGTAAAATAAAATACTCAACAATGCCTTTTGTGGCTAAACGATGCGGTGTTCAATTCAGCCCACCATCAATCGTTTTAATTTATGAAAGTAATGTTAAGGATACAAACAAGATCCGCAAAAGAATCATACCTGTGAGGAACTTCTCGAACTGTTCAGACTGCTGCATGGCTGCGGAGAGAATGAAGCACCATATTCGGCATAGGGCATACCTGGAGAGTGTTTCATTGGGGCAGCTGGAGAGGCTTCATATAGTGCTGCGGGATCACATGCAGGGCCACAGCCTGGAGCACACTCTAGCCTCCCTCCGCCTGGACCCTGAGGAGGACCTCAACAAGCTGGATGATGAGGAGCTTGCGCGCAAGAAGGCCCAAATGGACAAACTCTTTGAGCGCAACCGAAGGCAGAAAGATGACCCTGACTTTGTCTATGACCTGGAGGTGGAATTTAAAGGAGAGGTTGCTCGGGAACCATGCAGCTGGGATGAAGAGGAGTCTGATGATGGGTTTTAAAATAACACAGGTCAGACTGGGAGTGTTTCAGTTTGTCAACAAAGCACCCTACCTGATCTTTAGTGATTGAATAATACTCATTCCTTTGCACAGGGCAGTTGTTATTCTGGTCCTTTGCTCAATTAAGCCATCAACAACAACCATATCCAACTGGACATGGATAAAAAAATTTAACTAATATCCTTACAGATGCTATTGAAATATTGAGTAGTTGTACATGTTTATTGATATGAAACTTACATTTACAAAATACAAATACTATGTCTCCTTGACCCTCTGTTTCAACAGCATTATACTTGTACAAGATTGATATATTCACAGTTAACTAAAGACAAGTTTATGCTAAACCCCTAAGAATCCCGAACAATTAAGTAACAATCTTTGGAAAGTAATATTCTTGTCACATGTCGTTGTCAACATTGTAGCCTATATCAAGTACAATAGTATTGTGTAAGGTTTGAATAAAAAGTAGCACATACAACTATCAAATATCTGAATCTCTACATTTAAAATTTTAGGTCAACAAAATATTCAAAAGCAATAGCAGTGTTTTTTTACAGTGGATAATAGCTCAGAATCATTTATGTTCAATTTCTTCAAATAACCAGGTTTCTATCCAACCATTTAATGTAGATTAATTACCTGAcgcattt

Function

GO: NA

KEGG:

id description
K16801 CEP19; centrosomal protein CEP19

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU486625 lncRNA downstream 14138 66784937 ~ 66785490 (-) True G429583
TU486642 lncRNA downstream 31732 66767693 ~ 66767896 (-) True G429599
TU486636 lncRNA downstream 37993 66761380 ~ 66761635 (-) True G429593
TU486631 lncRNA downstream 44286 66755125 ~ 66755342 (-) True G429588
TU486613 lncRNA downstream 50776 66744888 ~ 66748852 (-) True G429574
TU486621 lncRNA upstream 8289 66810013 ~ 66812758 (-) True G429580
TU486660 lncRNA upstream 36452 66838176 ~ 66839233 (-) True G429617
TU486664 lncRNA upstream 80318 66882042 ~ 66882304 (-) True G429620
TU486663 lncRNA upstream 82188 66883912 ~ 66884643 (-) True aqp12
TU486761 lncRNA upstream 177163 66978887 ~ 67057675 (-) True ankmy1
XM_036978153.1 mRNA downstream 5633 66786837 ~ 66793995 (-) False LOC110524398
XM_021603996.2 mRNA downstream 6690 66786837 ~ 66792938 (-) False LOC110524398
XM_021603995.2 mRNA downstream 7198 66786837 ~ 66792430 (-) False LOC110524398
XM_036978154.1 mRNA downstream 7492 66786837 ~ 66792136 (-) False LOC110524398
XM_036978155.1 mRNA downstream 7562 66786837 ~ 66792066 (-) False LOC110524398
XM_021603999.2 mRNA upstream 81965 66883689 ~ 66885402 (-) False aqp12
XM_021604002.2 mRNA upstream 253935 67055659 ~ 67068645 (-) False ankmy1
XM_021604007.2 mRNA upstream 709728 67511452 ~ 67513336 (-) False LOC118936331
XM_036978164.1 mRNA upstream 709728 67511452 ~ 67513347 (-) True LOC118936331
XM_036978165.1 mRNA upstream 1008871 67810595 ~ 67911677 (-) False lrrc7
TU486620 other downstream 9792 66787051 ~ 66789836 (-) True LOC110524398
TU484971 other downstream 1417038 65370116 ~ 65382590 (-) False G428132
TU484709 other downstream 1788030 64999708 ~ 65011598 (-) False G427902
TU484689 other downstream 1888630 64905045 ~ 64910998 (-) True LOC110524332
TU484039 other downstream 2066656 64725927 ~ 64732972 (-) True LOC110524330
TU488974 other upstream 1008881 67810605 ~ 67816544 (-) False lrrc7
TU488969 other upstream 1009762 67811486 ~ 67818124 (-) True lrrc7
TU489232 other upstream 1538480 68340204 ~ 68352745 (-) True bend5
TU489586 other upstream 1898097 68699821 ~ 68707448 (-) True G432310
TU489614 other upstream 1948493 68750217 ~ 68755057 (-) True G432338

Expression Profile