RNA id: trnav-aac-9


Basic Information

Item Value
RNA id trnav-aac-9
length 73
RNA type mRNA
GC content 0.52
exon number 1
gene id trnav-aac-9
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 66873889 ~ 66873961 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtttccgtagtgtagtggttatcacgttcgcctaacacgcgaaaggtccccggttcgagaccgggcggaaaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU485818 lncRNA upstream 88373 66784937 ~ 66785516 (+) True LOC110524392
TU486016 lncRNA upstream 120436 66753235 ~ 66753453 (+) True G429028
TU485984 lncRNA upstream 166111 66707547 ~ 66707778 (+) True G429001
TU485975 lncRNA upstream 175890 66671245 ~ 66697999 (+) True G428992
TU485826 lncRNA upstream 215860 66656735 ~ 66658029 (+) True G428857
TU486092 lncRNA downstream 12222 66886183 ~ 66886424 (+) True G429102
TU486093 lncRNA downstream 13699 66887660 ~ 66887884 (+) True G429103
TU486825 lncRNA downstream 197830 67071791 ~ 67072079 (+) True G429767
TU486829 lncRNA downstream 199714 67073675 ~ 67073875 (+) True G429771
TU486925 lncRNA downstream 325636 67199597 ~ 67251340 (+) True G429865
trnav-aac-8 mRNA upstream 4239 66869578 ~ 66869650 (+) True trnav-aac-8
trnag-gcc-13 mRNA upstream 8235 66865584 ~ 66865654 (+) True trnag-gcc-13
trnag-gcc-12 mRNA upstream 22649 66851170 ~ 66851240 (+) True trnag-gcc-12
trnav-aac-7 mRNA upstream 23269 66850548 ~ 66850620 (+) True trnav-aac-7
trnag-gcc-11 mRNA upstream 24817 66849002 ~ 66849072 (+) True trnag-gcc-11
XM_021604000.2 mRNA downstream 8033 66881994 ~ 66884028 (+) False rpp21
XM_036978156.1 mRNA downstream 17247 66891208 ~ 66987322 (+) True gpc5b
XM_021604003.2 mRNA downstream 129196 67003157 ~ 67057676 (+) True LOC110524403
trnaa-ugc-14 mRNA downstream 166086 67040047 ~ 67040117 (+) True trnaa-ugc-14
XM_021604004.2 mRNA downstream 206050 67080011 ~ 67288985 (+) True LOC110524404
TU485654 other upstream 731284 66142079 ~ 66142605 (+) True G428696
TU484533 other upstream 1352509 65453856 ~ 65521380 (+) True G427747
TU484228 other upstream 1845187 65024715 ~ 65028702 (+) False LOC110524338
TU486149 other downstream 107988 66981949 ~ 67048164 (+) True G429156
TU487389 other downstream 586768 67460729 ~ 67464143 (+) False LOC110524407
TU487402 other downstream 586768 67460729 ~ 67464323 (+) True LOC110524407
TU487928 other downstream 1229218 68103179 ~ 68103534 (+) True G430796
TU488020 other downstream 1338755 68212716 ~ 68214104 (+) True LOC110524423