RNA id: TU486059


Basic Information

Item Value
RNA id TU486059
length 1349
lncRNA type read_through
GC content 0.40
exon number 2
gene id rpp21
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 66840697 ~ 66884634 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgatttcctgcaagacaggaatgtcagtgttctgccatggccagcgaagagcccggatctcaatcccattgagcacgtctgggatcggagggtgagagctagagccattccccccagaaatgaccaggaacttgcaggtgccttagtggaagaatggggtaacatctcacagcaagaactggcaaatctggtgcagtccatgaggaagagatgcactgcagtacttaatgcagctggtggccactgaatgttacttttgattttgacccccctttgttcagggacacattattcaatttctgttagtcacatgtctgtggaacttgttcagtttatgtctcagttgttgaattttgttatgttcatacaactaTTTACACGTTAATtttgctgaaaattaacgcagctgacagtgagaggatttttctttttttgctgtTTTTTTGCTGGTGACAACCTATTAGCATTACATCAGTGGTATTTCGGTAATGGATTATAGTTGTAATTGGTTGAGGTTGGTAAAaatgccccccaaaaatgtatggaTTGAGTTGTGTATACCTCAACTTGTTCACAATGTACAGTAAGTTCAGGAACGACAACCAATGTTAAATGTTTAATACACATGTTTATTTAAAATAGTTATTTTCAATTGATGTATTACTTCTGAAAGAACACAGGTTTTACATGAGATATAAAATTGTATCATACATGTACAGATCTTATTATTCTATAGCCCACCCCTTTTTGTCAGTTTAACCTAAGGAGAGAATCAGCTGTTGAATATAGTGCTCAGTGCATAATGAAACATCCCAATAAGAACAAAATTGAGCATTGCATTCCTAATGCATTCTAGGTCTGTTATTGCCTAGGCTGAGGTGGATGATTTTTATATTCTTTCACTTTTTTTTAtctccctccccctttggcaCCTGGAAGTGGGTTTTCTGGGAATACAGCAGGTTCTTGGTAAAAATCCTGGGAATGTGGCCCATGTACAGGAGAAGGGCAAGGGTCATTCCTGAAAATAGGATATCTGTATTACCAGCTTGATAAGCAATTATGCCTCATTGTCAAGGATAAAGCCTTTTTTTATCAGGTGTTTGTATGTAAcaaaaatgttgtttgacttACCAAAAATGGGCCCAAGCCAGTAGACCACTGAGTACTCCGTAAAGGTGAACCCGGGACAGTAGAAGGTAAGGCCATAGGCCAGGGAGGGGTTCAGGAAAGCCATGGTATAATCACTGGCTGAAATACAAAGAAGATGAGTTCTCCGATCATTAATTTATTAATGCAGCGATCATctgcaaaaacagattttttttctgaCGCACAGATATAACATA

Function

GO:

id name namespace
GO:0001682 tRNA 5'-leader removal biological_process
GO:0004526 ribonuclease P activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU485818 lncRNA upstream 55181 66784937 ~ 66785516 (+) True LOC110524392
TU486016 lncRNA upstream 87244 66753235 ~ 66753453 (+) True G429028
TU485984 lncRNA upstream 132919 66707547 ~ 66707778 (+) True G429001
TU485975 lncRNA upstream 142698 66671245 ~ 66697999 (+) True G428992
TU485826 lncRNA upstream 182668 66656735 ~ 66658029 (+) True G428857
TU486092 lncRNA downstream 1549 66886183 ~ 66886424 (+) True G429102
TU486093 lncRNA downstream 3026 66887660 ~ 66887884 (+) True G429103
TU486825 lncRNA downstream 187157 67071791 ~ 67072079 (+) True G429767
TU486829 lncRNA downstream 189041 67073675 ~ 67073875 (+) True G429771
TU486925 lncRNA downstream 314963 67199597 ~ 67251340 (+) True G429865
XM_021603990.2 mRNA upstream 1430 66812879 ~ 66839267 (+) False pak2b
XM_036978144.1 mRNA upstream 1430 66817617 ~ 66839267 (+) False pak2b
XM_036978145.1 mRNA upstream 1430 66827084 ~ 66839267 (+) True pak2b
XM_036978151.1 mRNA upstream 28110 66800442 ~ 66812587 (+) False pigx
XM_036978150.1 mRNA upstream 28110 66801502 ~ 66812587 (+) False pigx
XM_036978156.1 mRNA downstream 6574 66891208 ~ 66987322 (+) True gpc5b
XM_021604003.2 mRNA downstream 118523 67003157 ~ 67057676 (+) True LOC110524403
trnaa-ugc-14 mRNA downstream 155413 67040047 ~ 67040117 (+) True trnaa-ugc-14
XM_021604004.2 mRNA downstream 195377 67080011 ~ 67288985 (+) True LOC110524404
XM_036978158.1 mRNA downstream 541693 67426327 ~ 67449696 (+) False LOC110524406
TU485654 other upstream 698092 66142079 ~ 66142605 (+) True G428696
TU484533 other upstream 1319317 65453856 ~ 65521380 (+) True G427747
TU484228 other upstream 1811995 65024715 ~ 65028702 (+) False LOC110524338
TU486149 other downstream 97315 66981949 ~ 67048164 (+) True G429156
TU487389 other downstream 576095 67460729 ~ 67464143 (+) False LOC110524407
TU487402 other downstream 576095 67460729 ~ 67464323 (+) True LOC110524407
TU487928 other downstream 1218545 68103179 ~ 68103534 (+) True G430796
TU488020 other downstream 1328082 68212716 ~ 68214104 (+) True LOC110524423

Expression Profile