RNA id: XM_021604002.2


Basic Information

Item Value
RNA id XM_021604002.2
length 6136
RNA type mRNA
GC content 0.49
exon number 17
gene id ankmy1
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 66978887 ~ 67068645 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGGGACGCCTCGGTTGTCAAGGAGTGTTGGAAACATTCCCTGGAGCCCTCACAGTGTGGTGATATTTTTGTTGCAGGCAATGGAATTACCTTTTGCTTTGACATCTGAGATCGTCAACTCCATGATTAGGTTTTCTCTGCATGCTCGCTCTCAGACGGACCAAGATTCGATAATATTTGACATGTAATGTACTGGATTTAAGTAATTCTTCCAAAGTGTTCCGATCGAGGTGTTCTTGGACGCAGCATTTCAACAAGAAAGCTACAAGAATGTAAGGATTATTTATAAACAGGCAGAATTTGTCGAGAATTTGCGACTATTTGTAAACGATTAACAAATGGGCTGTCCCTTCCATCGTTGTCAAGGCAACCTACACTGACTGACAAACCACCCGAAGACAAGACAGTTGAaggatttgtaaaagtttatggAAACTTGTTTGGTCAGCTAATGTTTGTAATTTAATGAAAGCCTACTATTCCACAAAATAATACGCTCTGTGTATAATGGCGACTTCTACAAGCGTTGCACCTGGGGCATCTGTCAGATGTGGAGTGCAGGCAGGTAGAGAGCATTGGACTAACATTAAAGCTGGACGTGAAAAGAGAAATGGACCTGGGGTTCAGCAGTGGTCTGACGGATCTAAATATGAAGGAGAATTTGTGAATGATTTGAAGCACGGCACAGGAGTCTTCACCTGGACAAATGGAGAGTTTTATGATGGCTCATTCTACAAAGATTATCGTCATGGAAATGGGACTTATTCCTGGCCAGCAGGCTTCAAATTTGTGGGAAAGTTTTATTTGAACCGGAAAGAGGGCTATGGCATTCAGACCTTCCCTGATGGCACCACCTTTCAGGGGTTGTACCATGCAGACGAGCGCTTTGGGCCAGGTGTGGTGACATACCCAGATGGACATCAGGACGTGGGTCTATGGCACCGGGAGAGGCTGCTGAGGCTGTGCACTGCTCTGGAGGGGGGCTTCACTCTCCAAGCCTTCCCAGAACACATGGCTCAGATCAATTGCAAGAAGGAGCCTAAGAACCAGTCCCAGAGCTCAGCCAAGGGGCCAGAGACCAAGGCCAAGCCTGGTACCAGGGAGGTTGGCATGGACCCACTTCTCTCTCCTTACCATGAGCTGCTGCAGGACGAACACTTCATCCTGCCCCCAGACATGGACCGCTACTCCACAGACTCGGACCACCTGCCTGTGCCCTGGGGGCTGCGTAAGGAGCTGGACCTGCAATTCTTCGGCGAGCACTGTGACAACCCAGATACTAACCCTGATGTCTCAGCAGCTTTACCACTGCAGCAGCGCATGCAGGCTCACATCCATAGGCACAGATTTGAGGTGGAGGCCCTGGACTGGGACGTGGAGGCTGTTCTGTCTGAGAACCGGCAAAGGTTTGGCCCTAAGGGATCTCTGGAGCTCAACTCAGAGGGCCTCATCCAGGAGGCCTCGCTGGGTGACCCGCAGAGTGTCTATCGCATCCTACGGGATGGTAAGATACACCCTGATGTTGGCGATGCCCGAGGACACACAGCACTCATTGCAGCTACGGTCAACTGCCATAATGATGTGATCCACCTGCTCCTGGACAGCGGAGCAGATGTGAACAAGCTCAACTGTGAGGGCATGTCTGCTCTGGCTGTTTGTAATGTCCTATACTACCCAATCCAGTCACTCCATGAGACAGTTGCAGAGAAGGTCCCACAAAAGACCCACGCAAAATCACAGGCTGTCAAAGCCCGGTCCCCATCAGTGAACAGTCCTCAGAGCAGCATAGTGGAAGCCACCAAAAACAGAGCCCAGACCACCAAACAGGCTGACCAGCCCAATCAGGCTGACGACACTGCTCCAAAGGGCCACACCAACCAGGCTGATAACGAGGCTATGGACCGTGGCCAGTGTAATGACAGTCAAGTGTCCCTTTGCAATGGCCAGGGTTATTGTCAGGAAGAGGCTGACCAGGATGAGGATGAACAGTACCTCCAGGAATGCAGTGACCAGGCTGCCCTGGACCTAGATCGCATGGACATGATAGTGGTGAGGGAAAGGCGCTCCATCCAGGTGCTGGATGGGAACATCCCACTGGGCTGTGTCCCCTGGCATGAGGGGGGTGGCTCTTATGATCTGacccagcagcagcaggaggagggagaggccgGATCAGAGGAGGaccggaggaggagggagaggagaggcagccTTATGGCTGACCCAGCGTTTGACTCGGCCCGCTCCCTGGCCAGCTTCCACATCCATGTCACGGAGGAGGTCATGCAGAAGACGGCCGAGGCCTTAAGCCGATCGGGCCTGGTACCACATGCTGACACCCAGGAGACCGTCCGCAAGATGGCCCTCATGAAGACCGAGCACCGGGGACGGTGGACCACCATGAAGCTGCTACTGGACAGGGGAGCAGACCCTAACGCCTCCAGTGTGCCCATGCCTGTCCTCTTCCTGGCCATCAAGGCAGGCCACATCCAAGCTGTCAGGCTTCTGCTGGAGTGTGGAGCACGCACTGATATGTGCCTGCCTTCAGAACAAAGGGGTTTCTACCCCCTGCACATCGCCGCAGCTCTCCCCGGGGCGGAGGGCCCCAAAATCACTGAGCTGCTGCTGCACGCCGTGGCAGACCCAGATGTCACCGCCCAAGACGCTCACGAGGTGTTTAAGCTGGACAAGAACCCAGTGGAGCCCCAGGCTGGTTTTGGGAATAAGTCTTCCACGTCGTCCGGCCCCCCGTCTCAGTTCTATATGGCCCCCAGTGTTCCCCCAGAAGAGGGGGGCAGGACTCCTCTGCACATGGCCTGTCAGAGAGACAAGGACTACACTAATGCTAGGGAGGTTGTGTCACTGCTCCTCTCCCACAAGGCAAGCACCAATCTTCTGTGGAGTGgccattctcccctctctctagctATTGCTAGCGGCAACGACTTGGCTGTTGATGAGCTGTTGGCTGGGGGTGCTGACCCCAACCTCCCCCTGACCCGCCGGGTGGGTAGTGCCCTCTGTGCCATGACCAATATCAGCTACGACTGTGCGGCTCACCTCCGCAACAGAACCAAGCTGCTGGAGAAACTGATGAAGGCTGGTGCCAACATACTGATGCCAGTGGTGGTTGGTGAGGGCCGCAGGTGTGCTGTGGGCACCGCTGTGGACTACGCCCACTATGCATTTCACCAGGACTGGCGCATTGCCCACACTCCGTACCATGCCCTgaaccagagggagagagaggcatacaATGCCCGCAGACAGATCCTCAGCGTGATGGGAGACCTGCTGCGTCAGGCAGTCATCAGGATGGAGAGACAGCGTGTAGAGAGGGAGCAGGGCCTGGGCAtcagcaGTGTTAGTCCCACAGAGAAGTTTGTGTACACTGGAGCAGGAGCCACTCCTCCCTGGAACAAGGCAGCCAGAGCAGTTCTCTCTGAGGAGCAGGACAGCACAGAGTCTCTCCCTCAGCAGATAGAACAGCAGCAGAGGGCAGAGCAGAGACGGGGAAGTAAGGCAGTCATTGTCAGGAAGCCCCTGTTTAAATACTGCTACCAGTGTGGCCGTTCTGTGGGTGTGGTCCTGATCGCCTGCAGCCGCTGTCACGAGGTATTCTACTGTAGCAAGACGTGCAAGATGAAGGCCTGGAACGACCGCCACAAGGATGAGTGTGTCCGTGTACCAGcTAAGCCCAAAGACCCAAACAGCTCTATGAGGAAGGCCAAAAGCAGCGAGGGCTCTCAGGATCCAGCCACTCGGAGACGATTTTTAGGAGCCGGGGCCAAAACCAAGACGGGCCAGCTCAACCTGGCCCAGAAACTCTCAGAGAGCCACTATGGAACCCTGAAAGAGAACTACAGCTTCATCTGACAGCTACACATAGACTGATTCTGTTATATTAAAGTACTTTGGGAATGGAATATATTCTCTagaaagatgaatggaggagAGTGGTGACTTGGTTTCATGTGAAACTGTGTGCCAGATGACTTGACAGACATGAGAATGTGCAGTAAGATAAAAATGTATAATCATTGGGCAGCATCCCAGGACCTTTGACTCTGTTACCAGAAGAAGCAATTACAAATAACAGTCAGTCTCAGTCGGACATCTTTAAAATGTCATCATGTTTATAATAGCTGACAATTCATGGGGGAAAACAACGACAGAATGTCGACATATTTTCACCTTGGCATTGTTGCTCAATCACAAGAACCTCAAAAGGggaattttgtatttatttttcaaattggcacaTTTTACTTATGCCTCCCACTGTATTGTAGGACAATCAAGTGTGTCCACCAAATACTTTGGGGCCCTTGATTTTCACACCCTGACACATAAAACCACATTCACACCACATGCACACATTTGATGTAATCAGCCAGCCTGTATCTGTATCCAAATCAATCAGCACCTCAACATGGCGCTTCTCTCCCATTGATTTTTCCATCTGAGGATTCTCTGTGTGTTGAGAGGGCCTGCTCATCGATTTCTCAGTGTTCATTGGGCTTGGGATTGAGCTGAGCAGCCCGGTGTTGGGTTTGTTAGCACAAGTATTTTGAGCTATAAGAACCTGCAGGTAACGAGGAATGGGCTTCTTATTCAGCTTCCCACCTAAATGTATTAAGAGCAAAATCTCTCACCAAATCTACTGTAAGTGCCAGGGAACCACATGAAAAGCAGGTGAAGGAGAAGTGTGGAAGTGGGCCTGGAAGTGTTGAAGGAGAGACCAGGGGCAGTGCAAATTTAGGGGATGATGATCAAGACTGGAAAGCAGCAATCATGCTCTGTATTCTGTTTACGTTTCTTTTAGCTCGGTTTTCAATGTTTCTCTCCTGGGAAATCAGAAGCTGTATTCACACAGTCTTAAAACATGCATTCTACATGCATCCATTCATGCTGTGCCTCTATATGCAGGCAGTCAAACAGTCTCACACACAGTTTTACACAAAGTCAAAGACAGGCACTCACACACTTACATACCGTACACCAGTACATTGACATATACACTGTGTTACATTAACGGACACTGTGTCACCAGATCTTCTCCATTCTAGCATCCACGTACTGTCTGGATGTCTCACCCCCAACAATTTATAATTTAATCACTATTGGCCATACATACACAATATGCCACTACATCAGATTTATTCTCTGCTATGACAGACtgtaactgtacacacacacagacactttgaAATGGTCCTCCTGTGTGTGACGGAGGGAACACGAGCCAGCTCCAACAACAATGCACTCCCATCACTGACTGCACCTTCATTACAATGTCACTGTGCTGCCTGGAACATTCTAGCAACGTTTGGAGAACGTGTGACAGTGATTTAGTCAAGGCATTCCTTCTCCACATCCAGCTGTAGTCAACTGTGCATATGGCAGGTGGGGAAGGTTCAAACCCCTAAGTTTGGGTTAgtgataatatattacattatattacaagATAGGAAATATGTATAAAAAGCTGCACCTCTCCTTTTTTTGACGGGTCGCCAGGATGTGTTGAGTGAACAACACTAACCAACGGCTATGCTTAAAATTCTTCTTGTGATCTGTATGCGTGTTGGGCTTATTTTGGAGTGTGTATACTCTGTGTGTTGCTGGCTAAGTGAGCTGTGCGTCACTTTGACTGCTAACAGAATGGTGGATTTTAGAAGTTTGAAGACCAGATTGATCAAATAAAATATCAGACACAGAGAGGCTTCCAGGCCTAATATGACGGAAGCGGCTTTCTACAGTCCTTCAATAGAGAACGGCTAGATTGTTATACTATACCCACCTGCTTTCACAGACCTACAGATCTCCTATCTTCATTTAATCACTCTGTTATCACAGAGAATGTCCCTgtgcagcaggaaatgcaaacttaagagtttttccactttaaaatgtcagacttgatttgccctaatgaaaagaTGTATCCACCCCTACAAAAATTtatattaattataatccacataataattcacatttcctgttgctgcaagatTATTGTCCTTTTGTGAGAAGGTCAAATTAAGATAGGACATAGATATGTCACTGCTGCTGTGTTAATTAATGTGCTATTGATGCAAGGGTTTTACAATAAACCATTATTTTTTATGTAATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU486663 lncRNA downstream 171016 66883912 ~ 66884643 (-) True aqp12
TU486664 lncRNA downstream 173355 66882042 ~ 66882304 (-) True G429620
TU486660 lncRNA downstream 216426 66838176 ~ 66839233 (-) True G429617
TU486621 lncRNA downstream 242901 66810013 ~ 66812758 (-) True G429580
TU486625 lncRNA downstream 270169 66784937 ~ 66785490 (-) True G429583
TU487326 lncRNA upstream 343252 67411897 ~ 67412183 (-) True G430255
TU487332 lncRNA upstream 349084 67417729 ~ 67418525 (-) True G430261
TU487366 lncRNA upstream 371566 67440211 ~ 67440425 (-) True G430295
TU487513 lncRNA upstream 381776 67450421 ~ 67451255 (-) True G430416
TU487539 lncRNA upstream 410074 67478719 ~ 67520525 (-) True G430434
XM_021603999.2 mRNA downstream 170257 66883689 ~ 66885402 (-) False aqp12
XM_021603994.2 mRNA downstream 253935 66799628 ~ 66801724 (-) True cep19
XM_036978153.1 mRNA downstream 261664 66786837 ~ 66793995 (-) False LOC110524398
XM_021603996.2 mRNA downstream 262721 66786837 ~ 66792938 (-) False LOC110524398
XM_021603995.2 mRNA downstream 263229 66786837 ~ 66792430 (-) False LOC110524398
XM_021604007.2 mRNA upstream 442807 67511452 ~ 67513336 (-) False LOC118936331
XM_036978164.1 mRNA upstream 442807 67511452 ~ 67513347 (-) True LOC118936331
XM_036978165.1 mRNA upstream 741950 67810595 ~ 67911677 (-) False lrrc7
XM_036978166.1 mRNA upstream 741950 67810595 ~ 67911677 (-) False lrrc7
XM_036978170.1 mRNA upstream 741950 67810595 ~ 67911677 (-) False lrrc7
TU486620 other downstream 265823 66787051 ~ 66789836 (-) True LOC110524398
TU484971 other downstream 1673069 65370116 ~ 65382590 (-) False G428132
TU484709 other downstream 2044061 64999708 ~ 65011598 (-) False G427902
TU484689 other downstream 2144661 64905045 ~ 64910998 (-) True LOC110524332
TU484039 other downstream 2322687 64725927 ~ 64732972 (-) True LOC110524330
TU488974 other upstream 741960 67810605 ~ 67816544 (-) False lrrc7
TU488969 other upstream 742841 67811486 ~ 67818124 (-) True lrrc7
TU489232 other upstream 1271559 68340204 ~ 68352745 (-) True bend5
TU489586 other upstream 1631176 68699821 ~ 68707448 (-) True G432310
TU489614 other upstream 1681572 68750217 ~ 68755057 (-) True G432338

Expression Profile