RNA id: XM_021604007.2



Basic Information


Item Value
RNA id XM_021604007.2
length 620
RNA type mRNA
GC content 0.42
exon number 7
gene id LOC118936331
representative False

Chromosome Information


Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 67511452 ~ 67513347 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TTTAATTTCTGTCAGGCCAGAAATATACAACAGAGAAGTCACGGATCAAAACATGAGGGGTCATATGTGACTTTGTTCATCGTAGACAAGTGTATAAAAAGTTATGTTGCAAGTCTTTGATAGAGGCGGATCTTAGCAATAAAACATGCTAGAAACAAATACCAGCATGACTGCTGCAGCGCCATCATGTGGAAACCATTAAGGCCAGttccatggtggcagtggggctCACCCTAGCAGCAGCTGGATTTGTAGGTCGCTATGCCATGCAAGCCATGAAACACATGGAACCCCAAATGAAGCAAGCTATGCAGAGTTTCCCCAAATCGGCTTTTGGTGGTGGATACTACAGAGGTGGATTTGATCCCAAAATGAACAAGAGAGAGGCGTCGCTCATTCTAGGAGTCAGTCCCACAGCTAACAAGACCAAGATCAGAGAAGCCCACAGAAAACTGATGATTCTTAATCACCCCGATAGAGGTGGATCACCATATCTTGCGGCTAAAATAAATGAAGCAAAGGATTTACTTGATGGACAACTAAAGAAATAGATCAGATAATCACATTGCACTTGGTTTTTCTTATTAATTGTGcccaaataaaaaatgtaagagATCAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU487544 lncRNA downstream 3121 67507729 ~ 67508331 (-) True G430438
TU487513 lncRNA downstream 60197 67450421 ~ 67451255 (-) True G430416
TU487366 lncRNA downstream 71027 67440211 ~ 67440425 (-) True G430295
TU487332 lncRNA downstream 92927 67417729 ~ 67418525 (-) True G430261
TU487326 lncRNA downstream 99269 67411897 ~ 67412183 (-) True G430255
TU488998 lncRNA upstream 330498 67843834 ~ 67844801 (-) True G431744
TU489112 lncRNA upstream 539394 68052730 ~ 68054543 (-) True LOC110524417
TU489141 lncRNA upstream 551561 68064897 ~ 68065317 (-) True G431882
TU489155 lncRNA upstream 565329 68078665 ~ 68078940 (-) True G431896
TU489161 lncRNA upstream 570455 68083791 ~ 68084003 (-) True G431902
XM_021604002.2 mRNA downstream 442807 67055659 ~ 67068645 (-) False ankmy1
XM_021603999.2 mRNA downstream 626050 66883689 ~ 66885402 (-) False aqp12
XM_021603994.2 mRNA downstream 709728 66799628 ~ 66801724 (-) True cep19
XM_036978153.1 mRNA downstream 717457 66786837 ~ 66793995 (-) False LOC110524398
XM_021603996.2 mRNA downstream 718514 66786837 ~ 66792938 (-) False LOC110524398
XM_036978165.1 mRNA upstream 297259 67810595 ~ 67911677 (-) False lrrc7
XM_036978166.1 mRNA upstream 297259 67810595 ~ 67911677 (-) False lrrc7
XM_036978170.1 mRNA upstream 297259 67810595 ~ 67911677 (-) False lrrc7
XM_036978168.1 mRNA upstream 297259 67810595 ~ 67911678 (-) False lrrc7
XM_036978172.1 mRNA upstream 297259 67810595 ~ 67911678 (-) False lrrc7
TU486620 other downstream 721616 66787051 ~ 66789836 (-) True LOC110524398
TU484971 other downstream 2128862 65370116 ~ 65382590 (-) False G428132
TU484709 other downstream 2499854 64999708 ~ 65011598 (-) False G427902
TU484689 other downstream 2600454 64905045 ~ 64910998 (-) True LOC110524332
TU484039 other downstream 2778480 64725927 ~ 64732972 (-) True LOC110524330
TU488974 other upstream 297269 67810605 ~ 67816544 (-) False lrrc7
TU488969 other upstream 298150 67811486 ~ 67818124 (-) True lrrc7
TU489232 other upstream 826868 68340204 ~ 68352745 (-) True bend5
TU489586 other upstream 1186485 68699821 ~ 68707448 (-) True G432310
TU489614 other upstream 1236881 68750217 ~ 68755057 (-) True G432338

Expression Profile