RNA id: TU488974


Basic Information

Item Value
RNA id TU488974
length 2969
RNA type TUCP
GC content 0.36
exon number 4
gene id lrrc7
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 67810595 ~ 67983549 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTCATTCAGGCTTGAAGAAAACCAAACTAACAGAGATAGGGGCTGAAGCATGCTGCACCTCATCTGTCTGTTATCCGCCATTTTGTAAGACGTGACGTTTGCATCTTTGCAGCTTCCTGACTCTTTGCCTAACGGGTTGAATTACCCACAGGCAGGCGGCCATCACCCCCACCAATCACAGACAATGATAGTGACATCCGCGTCGGCCACACCCCCACACCGCTCGGTGCGGGACCAGCAGTACGAGGGCGCCATCAACAAGATCTCCATTCAACAGTACCAGTCTCCTCTGCCCATGGCCACCACCACCAGTCCCCGGCCCCAGAGCGCACGCTGTCTCATCCAGACCAAAGGCCAGAAAAGCATGGACGGCTTCCAGGAGCAGTTCTGTGTGCGGATAGAGAAGAATCCAGGCTTAGGGTTCAGCATCTCAGGAGGAATCAGTGGCCAAGGGAACCCCTTCAAGCCTTCTGACATGGGTACAGCCTGATGGACCGGCCTCCAACCTGCTTCTGCCTGGGGACAAAATACTGAAGGGCAATGGACATAGTTTTTTACACATGGAACATGAAACTGCTGTCTCTCTTCTGAAGAATTTCCAGAAACCTGTGGACTTGGTAATCTTGAGGGAGAGCacaatttaaatattttttataacaCCATTGCTTCTTGCCCAAACGGTTTGTGGAAATGTGTACAACCGATTTTTATCTATGAACAGAGACATTTGCCAATTGCTGGACCAATGGCAAATACTAGTGCCAAATGTACTATAGGATACATATCTTATAACCTATCTATGAATTTTGTGTAAACAGGAAATGTATATTCTGAGTTGATGTGAATGAAAGTCATTTTTCTCATTCAGCCCGAGGCTGTAGGTTGGAGTAATTTCATGTTATTTCTATTTATTTGATCTTTGTTTTTATTTCGAAGTTTTTGCTTATTTATATTGCCTTTTATTTTGTACCTTTTTCATTGGAGCTTCTCATTTTACTCTCAGAGCATGAAAACACACTAGCTCTTTAGAAATTACATTCACCATAAACACTGCCTCAACTTTGTATATGCCTTGTGTAAATATTTTCATTTACAATAAAGACATGAACAGTAGAGAGGGGAATGGTACTGAAAATATTATAATTGTTTGTTACAGAAGAAAGAAATCGCACTTGTCTCCAACCTTAATACAGGGCCAACTTATAaaatgcttttttattttttattatagcTTTTCCCACCGGTTGATTTAATTGTTTTAAAACTATGTCGCTCACTGTACCCAACCAGTCACTGCATTCTGTGAACTAGAATGTTTGTAGGTGCTCAATGCTCAatcatgtatatgtatatgtttaCACACATGAGCATAATTGAAGTAGAAGCAATATTCTATCCCAACGTGACAAGACTACCCTAGAGGGCCATCTGCTGGCTATATTCTGTGGTTTCCCATAATTGTGCCAAGGAGTATGTAATGTATACATAGCCCCACATTCATTTACAGAAAAATCCATTGTTTGTGCACTTAAGCACAATTGTAACATCGTTTCTcatctgtttgtctgtgtttctataaaaaacatttgagtgGTTTTGTTcgcactgatttgaagtggtgTGAGTAATATTGCTTAGCTTTTCAGCACCACTCTGTGGAACACCAATGACTTTTTAGAACATTTCAAGCTCAGTTTATTATGAGTACGCATCATTGGAGAAGTATTAATGAGAGAActatgatgttttttttttcaacaatGCCACTGCCCAGAATAAGCATTTCACCCTGTTACATTTCTGGATGGATGTTCATTTTAAGCTCTGATGTTACAGCATGGTCTTTGAATATGTTTTTGGGATGCATTGTGTTTTGAAATAGATTTTAGGGTCTCTCTTATAAAGAGATTTCTCTCTTTTTGCAAACCAATGAGATTATTATATTGTGAAAATTGGTGCCATTTTATCCCAATCAAAAACATATTCCTTATGAGCCCTGACAATTTTTCATAACATTTTTGTCTAATGTAGCATCAAATGTGACATTCTTGAGAAAAACTAAGCACCTATAACTCTATGGAAGGACCCTGGTTGAATTTGTGCCAAGCTAAGCTGGTAAGTGGTACTTCGGTATCCAGTCAATTATGAGTTCAAATATTCAAGATATTGTTCCAGAAAGTTTGATAATATAATTATTTTTACTAAATGTTTTCAGGTAATTATTCGGAATATATTGATATACCTTTGCTCAAATATATAGCTTTGCTCAATTTGCGAGATTTTATAAGGACAATGAAAGAGTATGGATGAAGATCTTACGACTTGAAGAAAAGCTCTactatcaaatgtatttctacagTAATTGTGAATTTGTGTTATacaaatattatatatatgtatatgaataTAAAAATAGTCATTTTTGTATGTGtttaaaatacaattaaatataAAAAAGTGAATATATGGTAATATTCAGTCAAATTGCAGTATTGATGTAAATAATTGTGAATGAAAACACATTGAGATAATTTATTCATAGATTGTGAATGTACTCCAAGCTTCTGCAGTATGAAGACTCACTGGACTTGAATGCTGCTTCATTTTTTGTGCAAAAAGTAATTTTAACTATTGAAAGAGAATTATTCTGTTTAGTTGGACAAATTTAGTGAATTTATTATACTATTTATTTGCACATGCAAGTTTAATCCTTCCAGTTTTATTTCTGTATTAACACAAAGAAATGTAATTGGTAAAGTATATATTGTGTGTTTAGATTGCATTTCACAGATGCTATCTGTACATATTTAAGatacatttttattaaaaaaatattataaaattGAACGAAAAATGCTGTGCAGCAAATACAGAGCCATTTTCGGCTTTGGAAGTACAATTTTTCAGTATTTAAGAAGTGTTTTGAATAATGTATAAAAGTATATTGTACAAATAATAAAAATGTCACT

Function

GO: NA

KEGG: NA

JBrowse2

Loading

Neighbor

RNA id RNA type direction distance location representative gene id
TU487539 lncRNA downstream 290080 67478719 ~ 67520525 (-) True G430434
TU487544 lncRNA downstream 302274 67507729 ~ 67508331 (-) True G430438
TU487513 lncRNA downstream 359350 67450421 ~ 67451255 (-) True G430416
TU487366 lncRNA downstream 370180 67440211 ~ 67440425 (-) True G430295
TU487332 lncRNA downstream 392080 67417729 ~ 67418525 (-) True G430261
TU488998 lncRNA upstream 27290 67843834 ~ 67844801 (-) True G431744
TU489112 lncRNA upstream 236186 68052730 ~ 68054543 (-) True LOC110524417
TU489141 lncRNA upstream 248353 68064897 ~ 68065317 (-) True G431882
TU489155 lncRNA upstream 262121 68078665 ~ 68078940 (-) True G431896
TU489161 lncRNA upstream 267247 68083791 ~ 68084003 (-) True G431902
XM_036978164.1 mRNA downstream 297258 67511452 ~ 67513347 (-) True LOC118936331
XM_021604007.2 mRNA downstream 297269 67511452 ~ 67513336 (-) False LOC118936331
XM_021604002.2 mRNA downstream 741960 67055659 ~ 67068645 (-) False ankmy1
XM_021603999.2 mRNA downstream 925203 66883689 ~ 66885402 (-) False aqp12
XM_021603994.2 mRNA downstream 1008881 66799628 ~ 66801724 (-) True cep19
XM_021604015.2 mRNA upstream 185541 68002085 ~ 68009594 (-) False si:ch211-198n5.11
XM_021604017.2 mRNA upstream 185541 68002085 ~ 68009594 (-) False si:ch211-198n5.11
XM_021604018.2 mRNA upstream 185541 68002085 ~ 68009594 (-) True si:ch211-198n5.11
XM_021604020.2 mRNA upstream 236364 68052908 ~ 68085127 (-) False LOC110524417
XM_021604019.2 mRNA upstream 236364 68052908 ~ 68114236 (-) False LOC110524417
TU486620 other downstream 1020769 66787051 ~ 66789836 (-) True LOC110524398
TU484971 other downstream 2428015 65370116 ~ 65382590 (-) False G428132
TU484709 other downstream 2799007 64999708 ~ 65011598 (-) False G427902
TU484689 other downstream 2899607 64905045 ~ 64910998 (-) True LOC110524332
TU484039 other downstream 3077633 64725927 ~ 64732972 (-) True LOC110524330
TU489232 other upstream 523660 68340204 ~ 68352745 (-) True bend5
TU489586 other upstream 883277 68699821 ~ 68707448 (-) True G432310
TU489614 other upstream 933673 68750217 ~ 68755057 (-) True G432338
TU489837 other upstream 1188075 69004619 ~ 69006106 (-) True G432513
TU491077 other upstream 1706270 69522814 ~ 69524790 (-) True G433683

Expression Profile

TU488974 Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 6.
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TU488974 Expression in each Bioproject

Bar chart with 17 bars.
TU488974 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 200.
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