RNA id: XM_021604017.2


Basic Information

Item Value
RNA id XM_021604017.2
length 2675
RNA type mRNA
GC content 0.45
exon number 13
gene id si:ch211-198n5.11
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 68002085 ~ 68009594 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGGTCTAGCAAGATGGGCGCGTTGAAGGATCACTTTTGTTTCCGCCCAGACGTTAATTCGTGTAACACCTAGAAGCGAAGTCCATTTGTAATGGAAATAAACTTGAGATACGTCTAATATTTTACGCAGCTAAACAGTCATGTACAGTTGCCTTTCAAGGGGTTTGAGGACCAAAAGCAGACTATGTCCTGGTTATGTCTCCTCTCAGTCACCTCTATGGAACGTTGACCCGTTCACACACAGGCGTCCAGAACGCTGTTTACACTTAAGGACATCAGCAGGTAACCTATGGCAACCTTTGGCACACATTCTCTCAGGCCAAGCTAAGCAGCTGCCAGTGGCAGCCTACTTGATGAGCACCAGTGTGCACAGAAGACGATTGCCAAGTGCCTTTCCAGTTTTAGATGAAGCCCTTCAGCCAATTCACAATGACGTATTTGAGGCTAACCTACGAAACAGCCAGGCATGCCAAGAAAGGTATATTGAATACATGGAGAAGGTGAAGAAGGGGGGTGGGGAGAATGCAGTAAAGAGGCACACCCAGAGAAACAAGAAGATGTTGGTTACGGACCGTCTTCGCATGCTGTTTGATGACGGATACTACTTTGAGCTGTCTCCCTTCGCTGGAATGGGCCTACCCTATGGAGACATCCCCTCAGCAGGCTGTCTCACTGGTATAGGTAAAATCAACGggttgtggtgtgtgtttatTGCCAATGATGCTACTGTGAGTGGTGGTACAGCCTATCCCATAACCGTCAAGAAGCAGCTCAGAGCCCAGGATGTAGCTATCCAGAACCGACTTCCTTGTGTCTACTTGGTGGATAGTGGAGGTGCATTCCTTCCTCTTCAGTCTGAGATTTTCCCTGATAAAAACCAAGGAGGACGTACTTTCTACAATGAAGCCATCATGTCTGCCATGAAGATCCCTCAGGTATCCGTGGTTTGTGGTTCATGTACAGCTGGCGGTGCATACATCCCCACTATGGCAGAAGAGACTGTGATGGTGCACCGGATCGGGACGATATTCCTGGGCGGACCGCCCTTGGTGAAAGCTGCCACAGGGGAAGAAGTCTCCCCAGAGAATCTGGGTGGGGCCACACTCCatgcagaAGTGAGCGGCTGTGTGGACCACTTTGCCTCTGTGGAGAAGGAGGCCTATGAAACCACACGTAACATAATCTCTACCCTCAACTTTGAGCTGCCCGAGGAGGACGAGGCAGGGGTGGAGGAGCCTCTACATAGTGTGGAGGAGTTGATGGGTCTGGCCCCACGGGACTATGAACACAGCCTGGAGATCCTGAGTCGGCTGACTGATGGCAGTAAGTTCCAGGAATTCAAGGCTCGATATGGAACAACCCTTGTGACTGGTTTTGCCAGAATTAGCAGGCATCAGGTTGGCATTGTGGCGAGCAATGGGGCGCTGACACACAACGCATCATTAAAAGGCAGCCACTTTGTCCAGCTGTGTGACCAGCGAGACATCCCCCTGATATTCCTACAGAACACCGTCCCAATGCCAGAGCTGACCCTCTCCCAAACCCAGGCAGAGACCAACGCCAACAGACTGAAGGCTCAGGGTTCCATGATGTCAGCTGTGGCATGTGCCTCTGTTCCAAAAATCACCATCGTCATTGGGGGATGCCATGGCGCTGAAAGTTATGCTATGTGTGGCAGGTCATTTGACCCAAACTTCCTATTCCTTTGGCCCAATGCCAGAGTGTCCCTGGTGGCCCCTGGTCACTCTGCAGCTCTGGcacaagaggaggaggatgttgagAAGATCAATAAGAGGTTGGAGAAAGAGAGCTCTGCATTCTTCTCGTCTGGCAGACTTTGGGACGATGGAGTGATTCTTCCCCAGGACACGAGGAAGGTTTTGAGTGATTGTCTGAAAATCATCAAACAACAGGAATATCAACTCTCCAAAGAGAAAATAAGGACTCCATTACTCCGAATGTAAAACTTTTTTTACAATTGTCTTTTAGAAAAAGGTATTAAATCTGACTAAATGCCTTAAGGCCCTAATTACCTTAACAATGAAGTGCTGATCACAGAAACAAACATTGGAGATTTGTAATAACATATGTTTatttgtaatggcattgaataaaaGAATGTGTAAATAACTTGAAACATAGAAGGAAAAACAATTGTCGTGTGTTAATTCTTACATAGTGccttcataccccttgacttatttacacattttgttacagcctgaattcaaaatgtattaaatacccatctacacacaatactcaaagggaaaacatgtttttgtaaatgtatttaaaaataaaatacagaaatctcatttacataagtatgcactcccgagtcaatacatgtttgaATAACTTTGGGCAACgattacagctgagtctttctgTATACATCAAGAGTTTTGCTCTCCTAGattatacaatatttgcacattttaaatattcaagttctgtcaagttggtcgttaatcattgctagacagccattatCTAGTCTTGCCAAAGATTTAAGGCGAAACTGTAAttaggtcactcaggaacattcaatgtcatcttggttagcaactccagtgtttatttggccttgtgttttaggttattgtcctgctgaaaggtgaatttgtctccatGTCTCTTGGAAAGCAGACAACTAGGTTTCTCTAAAAAATt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU488998 lncRNA downstream 157284 67843834 ~ 67844801 (-) True G431744
TU487539 lncRNA downstream 481560 67478719 ~ 67520525 (-) True G430434
TU487544 lncRNA downstream 493754 67507729 ~ 67508331 (-) True G430438
TU487513 lncRNA downstream 550830 67450421 ~ 67451255 (-) True G430416
TU487366 lncRNA downstream 561660 67440211 ~ 67440425 (-) True G430295
TU489112 lncRNA upstream 43136 68052730 ~ 68054543 (-) True LOC110524417
TU489141 lncRNA upstream 55303 68064897 ~ 68065317 (-) True G431882
TU489155 lncRNA upstream 69071 68078665 ~ 68078940 (-) True G431896
TU489161 lncRNA upstream 74197 68083791 ~ 68084003 (-) True G431902
TU489169 lncRNA upstream 80623 68090217 ~ 68090511 (-) True G431910
XM_036978167.1 mRNA downstream 18536 67810595 ~ 67983549 (-) False lrrc7
XM_036978174.1 mRNA downstream 90406 67810595 ~ 67911679 (-) False lrrc7
XM_036978176.1 mRNA downstream 90406 67810595 ~ 67911679 (-) False lrrc7
XM_036978169.1 mRNA downstream 90406 67812847 ~ 67911679 (-) False lrrc7
XR_005051841.1 mRNA downstream 90406 67812965 ~ 67911679 (-) False lrrc7
XM_021604020.2 mRNA upstream 43314 68052908 ~ 68085127 (-) False LOC110524417
XM_021604019.2 mRNA upstream 43314 68052908 ~ 68114236 (-) False LOC110524417
XM_021604024.2 mRNA upstream 174632 68184226 ~ 68190916 (-) True slc5a9
XM_021604029.2 mRNA upstream 205406 68215000 ~ 68231509 (-) True spata6
XM_021604030.2 mRNA upstream 224527 68234121 ~ 68643132 (-) True agbl4
TU488969 other downstream 183961 67811486 ~ 67818124 (-) True lrrc7
TU488974 other downstream 185541 67810605 ~ 67816544 (-) False lrrc7
TU486620 other downstream 1212249 66787051 ~ 66789836 (-) True LOC110524398
TU484971 other downstream 2619495 65370116 ~ 65382590 (-) False G428132
TU484709 other downstream 2990487 64999708 ~ 65011598 (-) False G427902
TU489232 other upstream 330610 68340204 ~ 68352745 (-) True bend5
TU489586 other upstream 690227 68699821 ~ 68707448 (-) True G432310
TU489614 other upstream 740623 68750217 ~ 68755057 (-) True G432338
TU489837 other upstream 995025 69004619 ~ 69006106 (-) True G432513
TU491077 other upstream 1513220 69522814 ~ 69524790 (-) True G433683

Expression Profile