RNA id: XM_021604022.2


Basic Information

Item Value
RNA id XM_021604022.2
length 5563
RNA type mRNA
GC content 0.46
exon number 14
gene id LOC110524419
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 68010191 ~ 68052897 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGCAAGGCTAAATCAGACAGCTCCTCCAGAGTGAGCAAGGAGTAGCTACACCACAGACGACTGCAAACGCAACCTTGGCGAGTTTTGAGCGGGGAATACGCTGACAATCTGGGGGTTTATTAACAAGGGGAGTCCGCAATGACTTGGGGAACGGAGCTTTGGgACCAGTTTGAAAACCTTGACAAGCATACTCAATGGGGGATTGACTTCCTAGAGAGGTATTCAAAGTTTGTCAAGGAAAGGCTGGAGATCGAACAGACGTATGCAAAACAGTTGAGGAACCTGGTGAAGAAGTACTGTCCCAAACGCTCCAAAGACGATGAACCTAGGTTCTCGTCGTGCGTGTCATTCTACTCCATCCTGAACGAGCTGAATGACTACGCGGGGCAGAGGGAGGTGGTGGCCGAGGAGATGGGACACAAGGTGTACGGAGAGCTGATGAGGTATTCACAGGACCTCAAGTCAGAGAGGAAACAGCACCTCCAGGAGGGCAGGAAGGCCCAGCAGTATCTGGACCAGTGTTGGAAACAGATGGACAATAGTAAGAAAAAGTTTGAGCGGGAGTGCAAGGAGGCAGAGAAATCACAGATCAGCTATGACCGGTTAGACAACGACATCAACGCCACCAAGTCAGAGGTAGAAAAGGCAAAGTCCCAGTTGTACCTGCGCACACACTCGGCAGACGAGAGTAAGAACGAGTACGCTGCTCAGCTGCAGAACTTTAACGGGGAACAGTGGAAACATTTCAACGTGGCCATTCCACAGATATTCAAGAACCTGCAGGACATGGACGAGAGGCGGACAGTGAAGCTGGGAGAGACGTACCGGAGCTTTGCCGACGTGGAGCGCAGAGTCGTCCCCATTATCTCAAAGTGTCTGGAGGGTATGGTGACTGCGGCCAAGGCTGTGGACCAACGCAAGGACTCAGCGATTGTAGTGGAGTCGTTTAAGTCAGGCTTTGAGCCTCCAGGGGACTACCCGTTTGAGGACTATAGTCAGAACCTCTCCCGGACAGGCTCAGACAACACCATCAGCACCCCCAAGAATGAGGGGGGGGTCAAGCCAGACCCCAAACACTCCATCAGCAAAACAGCCAAGAACAAACTGTGGCTCTTTGGGAAAAAGCCGAAGGCTCCATCACTGGAGGACTTCAGCCATCTGCCTCCTGAACAGAGACGCAAGAGGCTCCAGGCTCGGATAGACGAGCTCAGCAAAGAACTACAGAAAGAGGTGGACCAAAGAGATGCACTGAACAAGATGAAGGATGTGTATGAGAAGAACCCTCAGATGGGCGACCCCCAGAGTCTCCAGCCCAAGATATCAGAGACCATGTGCAACATGGAGAAACTGCGCTCTGAGATCCACAAGAATGAGAGCTGGCTGTCGGAGGTGGAGGGGAAAGTGAGCACCAGAGGAGACCGAAGACCCAGTGCTGATGTCAACCATCACGCCCCCCACggcagagagagCCCTGAGGGCAGTTACACCGACGTCCCCAACCAGGAGCACCGCAGCCCCCCTCACCAGCCAGACCCCCGACAGGCCCACCAGCCAGACGAGTTTGATGATGAGTTTGACGATGACGACCCGCTCCCAGTCATTGGCCACTGCAAAGCACTCTACTCCTTTAACGGTCAGAACGAGGGAACGCTGTTGATGAAGGAGAACGAGGTGCTGTACATCATCGAGGAGGACAAGGGTGACGGCTGGACGCGAGCCAGGAAGCAGAGCGGAGAGGAGGGCTATGTGCCCACGTCCTACGTGGAGATCGCCATGGAGAAGAACAGCAAAGGTGCAGTCACCTACATCTGATCTGACCACCTGCATGGACTCCTATATCatatcccctcttcctcctctggggATTGCTGGTCAGAACAGCAGCCCCTCTTCTTTGTTCACTGTGTGAGCTCACGACAAACAAACACAACAGACATCCTGGTAGTGTAGTGACCTCCCTGTACAGGAGCTCTGTACCAATGAATTAAGCCATGTGTGTCTGTATGAGGACGTATCCATAGCCCCGCTGTGGCAAGGGGACTCCTCCCCCACTTAAGGCAGATTATTGTATTTAATATTTCAGAAGTGATTTGTGTTATGTTTGTTTTTAGTTCATGTGTCTTTTGTTTTTAGAAGGAGATGTTGTAATGCTCTACTGGTTTTTAGTTGTCAGTGGTGACAGATTTGGAAAATAGAAAAAGAAACTTACCTGTTTTACTTTTGTATGGTCTTATATGTGTTATCTGTTGTGAGTCTCATATGTGAAGTGATCTGCTCCACCTATTTAAGACAGGAATGGAGTTAAACAGTCCTGGTAAGGACTGGCTTGTTTTGTGCCTATATGACTCATGCCTCCCACTACCGTACTACTCTTTAAGATAATCGtacactctgtctctctttgtgtgtgtgtcacaacaATGGCACCCTCTGGTGGTCAGGACTATATTACACAGttgtactgtctctgtcctagtggtgtgggtggtggCAGGTGTCGATGCTCTGTAGCCGGGTCGGTACagtaactcctctcctctctctctctcctattggacTGCAGATTCCTGAGGGGAGCAGTGTGGCGAGGTCTTTGGTGGAGGGTACATGCTGAGTCTGTTCTGGGTGGGCAGAACAGGGGAGGGGAAAGGCTTGGCAGGTTGCATGTTTGCATGCACACGTCCATGGCCATTAACATGATTCCATAGCAGCAGAGACTCTTGGGATAGTAGCTATGCCTCTGTAGGAGGGGAGCAGTCTTCCTAGACTGTGTCTGCCTAGACACAGCACAGAGTAACCATCCGACTGCAGCATAACAGCAGAATCCGGGACCGGGGAGGGGTCTTAGAGCTAGCAGCTTACAACATCATCATTTATAATGAGagaactacactactactacactactactacactactactcacCTCTGTATTTCTGTTCCTCAGATAACGTCCAGCACTAACAGCCAGtcttgttgttgcattgtcattCTATTGTTGGGAATGCCTGCCTGACTGTGCCACTCTCCTGTGGTCGCCTTACCTTAACGCGCTTCAGCATGTCTGTAACATGAACTGTCATTCCTTCATACAGGACTGGCCATGATGACTGGCTTGGATGTAACTCTGTGGTCGCTCCCGCCGCCCATTCATTCACTTCTAATCTTCCTGTATGTCTTCTTCATTCTTCCACGTTTAGTTTTTTGTGTGCCTTGTTTTTGTTCTAACTGTGTTGATGGAATTGTTCTCATCGTgctagtgcgtgtgtgtgttgaatgTCATCTCTGTCATGGTGTTGTTCAGTAACTCGTGGCACCGCATTCAGTCACTCAGGTCAGTGTAGGATTACACTAGTCACAGACAGCCGGCTTGCCCATCACACTACCCCCTCCTCACTCCGCCCTGCACCAGCACCAGACAAGCGGAAGGCTGGTGGGGTAGTGCAGTGACATCAGCACACCAGCAGAGGGCCTTCCTCCCTCGCCAGTCAGTCACCACTCAAGCTCAGGCCAGGAAACCTGGAGGCTGAGCTAAAACAAACTACAAAGGCCATCCAACAACAACACTCCATGCATTATTTTCCTTAATAATATCTGAGAGAGAGGATGGACCCACTGAGTGCTCTTCCATTACTCTCTGCTGCACGCAAGGACTCCAACCGACTCGGTCTACGCTGGCTTGCTGTGGTGCTGCTCTTGGGCCTGACCGCCacgtctctcctcctctgtctccgtgGAGCATCCTGGGGCCTCGGTGTGCTGCCATCTCCACACGAATGAGTGTTGCATTACCTTAACGTTCCTCTTTCAAGCGCATATTATATTTCTGATTGTGATGATACATATATTAACATATGTATACATATacctgtatgtatatatgtagttAATTGTATTACTGAATTGTATTAACATCTCTTTTATTTCATACTGAATGTGTTTTTATGGTGACTTTTTATAGGGTTTTAATCAGTCGTACCGTTAGCTCATAGTAACCATGCATTGTTTGTCAGAACATCCTTATGAAGGGATATGATGCACTTTTGCCCTATAGCATTTTTAATGAAATatcaatgaatgaatgaaatggaCTCTGTATGCTACCTTTTGTACAAATGTAAAGTGAGACAGCTGTGACCACTGTTATTATAGGAGGTGTAGAGTTCAGAACTACCACAAAATATAGGAATTTACTGCTTTTGATACTCCTAGTCCTAACCATTTTTAATTCAATTAATTTGGAAGTGAATTTAACTTGCATGATTCCCTTTTTAATTAGTATGAACATAATTGACATGGTGAGAGATCACCATGATCACCCATGTTGCTTAAAacaaaagatgtagcttttatcAGACTGACACAGGGTTTTACCCTGGCAGGATGTAATATTCCCCTTTTTGCAGTTCATTTGGTGGTCCCACTTTGAAATGCTAATACGATCAGTGATTTAGTTCCTAATAATTACTTAAAAGCTGTGAAAGTTATACCATATGTTCATCTTACTTGAACTGCATCTCTCTCAACTTCCTAGAGACAACCCTAGGTCTTAGACATCCAATGGAGGAACAGATCTTCTTCCTTGATGAATGTGCACTAACTATCACAGATAATGCTGTTTTTAAAATGGAACAGTGCAGGTTATATACACCCTGCGATTCTGTTTAGTTTATCATGTCATTCCGTCGCCTGGATGAGCTCATTTGAATGTTCACTCCTTTTTTGTTGAACTGGTGTATGTTATCAGAAATCAGAACTGGGGGAAAGACATTCCTTTCAGTAGCTTACCGAGGAGCATGAAGGTACATGCTTGACTCAACATATCTGGAGTTCACAGCAAATATTTAAGCGCTGTATATTGGCTACCTGCCTCTATTGTAGGCCTATTCATGTATTGACCCTTGACCCTACTCTACAATATCAACCGATATAGTAATACTGGTTAAATCCCTGATGGACATGTAATTGTTGATCAAAATCAGAAGAGCAAGTCAAGGTTTAAGTTGTTAATGTGTAAGTAGTTGTTTTTTTAATATGAAGTGCGTTAACCCATTCAtgtctgcagtgtgtgtctgGCTATCCTCCATCAGTAATAACAAGGATTTTGACACGCTTGTCTCTAATTGCCTAAAACGGTGCTGGACCGGATTGTTGGCACCACAGTGCAAGTGGCCTTCAGTGATGACCCTTTTTGATGCTGGATATGTAGGTTTCTCACTAGCATCCTTAACCAAATGTTATGCCATGAAGGGATTTTCATTTTGGACTGAAACTGAGCTAAATCATATCCATTATGCTGTAGTTCTGATCATTATGCAAAACTTAACAATAAGTTTTAAGACTCAGTAATATTCACGCTTCTGGTGGCAAATTCATCTAATGACAGAAAAGTAGATATGAGAATGTCGCTGTTGTCTTATTTTAACATATATTGTAATAACCAATTGCAGTACTTCTATTTCTTCATGTTGTGCACATCTTTTTACTTTTAATGTTGTGAGACACTTTGTGTGGGAAAAAAATCTGTTCTCTCAAATTGTTCTAATAAACAAACACATGAACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU487876 lncRNA upstream 7512 67973560 ~ 68002686 (+) True G430744
TU487428 lncRNA upstream 362999 67593301 ~ 67647199 (+) True LOC110524410
TU487386 lncRNA upstream 546055 67460729 ~ 67464143 (+) False LOC110524407
TU487387 lncRNA upstream 546055 67460729 ~ 67464143 (+) False LOC110524407
TU487368 lncRNA upstream 568188 67441733 ~ 67442010 (+) True G430297
TU487881 lncRNA downstream 5656 68058553 ~ 68058967 (+) True G430749
TU487907 lncRNA downstream 15367 68068264 ~ 68068617 (+) True G430775
TU487919 lncRNA downstream 36247 68089144 ~ 68089356 (+) True G430787
TU487930 lncRNA downstream 55204 68108101 ~ 68108398 (+) True G430798
TU487935 lncRNA downstream 60895 68113792 ~ 68114199 (+) True G430803
XM_021604014.2 mRNA upstream 9921 67996354 ~ 68000277 (+) True LOC110524415
XM_021604012.2 mRNA upstream 14844 67987179 ~ 67995354 (+) False depdc1a
XM_021604013.2 mRNA upstream 14844 67987181 ~ 67995354 (+) True depdc1a
XM_036978177.1 mRNA upstream 199876 67802829 ~ 67810322 (+) False lrrc40
XM_021604025.2 mRNA downstream 140855 68193752 ~ 68200853 (+) False LOC110524422
XM_021604026.2 mRNA downstream 140874 68193771 ~ 68200853 (+) False LOC110524422
XM_021604027.2 mRNA downstream 140949 68193846 ~ 68200853 (+) True LOC110524422
XM_021604028.2 mRNA downstream 159327 68212224 ~ 68214236 (+) False LOC110524423
XM_036978183.1 mRNA downstream 594919 68647816 ~ 68716531 (+) False elavl4
TU487402 other upstream 545875 67460729 ~ 67464323 (+) True LOC110524407
TU487389 other upstream 546055 67460729 ~ 67464143 (+) False LOC110524407
TU486149 other upstream 962034 66981949 ~ 67048164 (+) True G429156
TU485654 other upstream 1867593 66142079 ~ 66142605 (+) True G428696
TU484533 other upstream 2488818 65453856 ~ 65521380 (+) True G427747
TU487928 other downstream 50282 68103179 ~ 68103534 (+) True G430796
TU488020 other downstream 159819 68212716 ~ 68214104 (+) True LOC110524423
TU492109 other downstream 2906713 70959610 ~ 70959932 (+) True G434653
TU492265 other downstream 3165892 71218789 ~ 71223578 (+) True G434792
TU492302 other downstream 3245718 71298615 ~ 71298900 (+) True G434829

Expression Profile