RNA id: TCONS_00033584


Basic Information

Item Value
RNA id TCONS_00033584
length 2081
lncRNA type antisense_over
GC content 0.42
exon number 2
gene id XLOC_015569
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 32264355 ~ 32266672 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTTCAACGTAAAGTCTTTATTTTAGGATTCGAAGACTTGATAACcaagtttgattttctttctgaCTGAACTTACAGTGTAGCAaacacagacaaagaaaaaacaaagtaAGAGAGAGTGGCAAAATCCATCCTAAATGTAAAATTAGGACTGAATCAATCCAGTTTGTTCACTTAAATGTGAAGTTGTCCTCTTGACCGTTTCCAGGCTTTGATATGCTACAATATTAGCGACACAAGAACGGATCATCTGGAGTTGTGCTGGACTGAACATCGAAACAGACAAAACACGCTCCAACAGTGGCCTATTCAATAGGGTTGAAACAAAAACAGCTCGGTAGCGAACATTATTCCACAATCTTGAAGTTGGAGGTGTTTCTGTTATGCATCCATTGAATAATATTAACATGACCTAAAACCGAAGAACAAAACCCATAATAATAAACTACACTTGAAGGGTCCGTCCCTCTCCATGCTGAAACACTTTAGCCCTATAAATGTCAAATACTGTCATCATCAAATATAGTACAGATGGCATTCATTAATACatcttctttgttgttgttgctgttattacaATAACAGTTAAAAACCAAGAGTGAATGCTGGTCTCCCTGATAGGGTAACGAAAATAAGAGGCAGCGTTAGTTCATTCTGAGTCACACGGACAGTCAGTCACTCACCGCCGGGTCCCCTTGCACTTCAATtcaacttaaaaacaacaaaacaaacagtaagaAAAATCACATTCCACAGTCACCGTAAGCAAACAATGAAAACTCATCCTATAAGCGACCTGTAACAGATTGCGTTCTGCTCAACTAGATAAAGCCAACAACACTTGACCACTCAGATCCATACACTTTATAATTTATGCTTTACAATTGGTGAATAATCACCAGAGACCAGATGAAGAAGGTAGGTTATTGTATGATCTTTTGACAAGGACACTTTCCCAGAGTCTGAGGCATCGGTTTTGTCAGATTTGGCATTAAACAAACATGGGGGGCAAGGAATGAAGCGATCCCACAGATGCAACCAAAGCCGTAACCACCTTGTAGACACTGAAACGTTTTGATCATTTGATTTTTTAGTGGTTCcttaaattattacttattatgAGCATAATTGCTTGGAGAGTATATGAATATTGCTTATGAAGCACTAAGGTTGAAGCCCTGGTATACTTAAAGAGAAGTTGACTTTGAACAAAACCAGTTTGAATCAAAGGAGCAAACTGAGCTTTCTTCAGCTGGTAAACAAGTTTGggttacaattttttttaggtGTGACTCTGTGACCCCTGTTCAGTCTGTGAAAGTCGGACATCCATGGttaaaaatatactaaaaacTGCACTATTGTGAAAAGTGATGCGTAATTCTAATTTGAAGTAATGCTAACactgtttttttcatgtttaacaCTGTAAAGCTGCCTACTTCAAAGCTATATTCTATATAAAGtgctaaaaaaaatacatgtggCAGGATTTGACTAAAGAGCCAAGTTGCAGGTGAAGCAGTGGCCAGCTAGGGAAGTACTGAGCAGGTAAActtcacttctctgacctctaaaggtgctctagcgacagccATGGCCTTTAGTcaccttgttagagcaaccgactcccatacaaagattCGCCGGGTTCGATCCCAGCACAAAGCGGGCAGGCTAGTGGAGGACCGGcgaggttacattggtgccgtgacctggataggagtgaggtttaggggagtgactgtagcagaggccagctagtgaagtgctgagccggtaaacctcactcctctgacctctaaaggtgctctagtgacaaatgctagaggccatggtctttaccctccttgttagagcaaccgactcccatgcaaagaatcgccatGTTTGATTCCATCTTAGAGCGGGTTGGGTAGTGGAGGACTGGCGGGGTTAAGTTGGTGCCCTGACCTGGgtgagagtgaggtttaggggagtgATTGTAGCAGAGGCCAACTAGTGAAATGCtgagcaggtaaacctcactcctctgacctctaaaggtgctctagtgatagatgctagaggccatgctCTTTC

Function

GO:

id name namespace
GO:0044085 cellular component biogenesis biological_process
GO:0022607 cellular component assembly biological_process
GO:0001732 formation of cytoplasmic translation initiation complex biological_process
GO:0071826 ribonucleoprotein complex subunit organization biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0022618 ribonucleoprotein complex assembly biological_process
GO:0065003 protein-containing complex assembly biological_process
GO:0071840 cellular component organization or biogenesis biological_process
GO:0019538 protein metabolic process biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:0030163 protein catabolic process biological_process
GO:0009057 macromolecule catabolic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:0043632 modification-dependent macromolecule catabolic process biological_process
GO:0006412 translation biological_process
GO:0006413 translational initiation biological_process
GO:0043933 protein-containing complex subunit organization biological_process
GO:0006457 protein folding biological_process
GO:0044257 cellular protein catabolic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044265 cellular macromolecule catabolic process biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0010498 proteasomal protein catabolic process biological_process
GO:0010499 proteasomal ubiquitin-independent protein catabolic process biological_process
GO:0019941 modification-dependent protein catabolic process biological_process
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process biological_process
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0006518 peptide metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0051603 proteolysis involved in cellular protein catabolic process biological_process
GO:0034622 cellular protein-containing complex assembly biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0002181 cytoplasmic translation biological_process
GO:0002183 cytoplasmic translational initiation biological_process
GO:0016043 cellular component organization biological_process
GO:0071013 catalytic step 2 spliceosome cellular_component
GO:0071541 eukaryotic translation initiation factor 3 complex, eIF3m cellular_component
GO:0019773 proteasome core complex, alpha-subunit complex cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0005839 proteasome core complex cellular_component
GO:0005852 eukaryotic translation initiation factor 3 complex cellular_component
GO:0005854 nascent polypeptide-associated complex cellular_component
GO:1905368 peptidase complex cellular_component
GO:1905369 endopeptidase complex cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0033290 eukaryotic 48S preinitiation complex cellular_component
GO:0000502 proteasome complex cellular_component
GO:1902494 catalytic complex cellular_component
GO:0016282 eukaryotic 43S preinitiation complex cellular_component
GO:0070993 translation preinitiation complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0008135 translation factor activity, RNA binding molecular_function
GO:0070003 threonine-type peptidase activity molecular_function
GO:0004298 threonine-type endopeptidase activity molecular_function
GO:0003723 RNA binding molecular_function
GO:0031369 translation initiation factor binding molecular_function
GO:0003743 translation initiation factor activity molecular_function
GO:0051082 unfolded protein binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko05169 Epstein-Barr virus infection
ko05016 Huntington disease
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033583 lncRNA upstream 75364 32149121 ~ 32188991 (+) True XLOC_015568
TCONS_00033577 lncRNA upstream 136425 32019662 ~ 32127930 (+) False XLOC_015567
TCONS_00033575 lncRNA upstream 171832 32019662 ~ 32092523 (+) False XLOC_015567
TCONS_00033585 lncRNA downstream 119016 32385688 ~ 32390974 (+) False XLOC_015570
TCONS_00033586 lncRNA downstream 120607 32387279 ~ 32390974 (+) True XLOC_015570
TCONS_00033587 lncRNA downstream 338195 32604867 ~ 32608027 (+) True XLOC_015571
TCONS_00033588 lncRNA downstream 370408 32637080 ~ 32637505 (+) True XLOC_015572
TCONS_00033589 lncRNA downstream 378253 32644925 ~ 32647404 (+) True XLOC_015573
TCONS_00031114 mRNA upstream 245984 32016256 ~ 32018371 (+) False XLOC_015566
TCONS_00031115 mRNA upstream 246761 32016516 ~ 32017594 (+) True XLOC_015566
TCONS_00031112 mRNA upstream 254639 31948352 ~ 32009716 (+) False XLOC_015565
TCONS_00031113 mRNA upstream 258043 31957554 ~ 32006312 (+) True XLOC_015565
TCONS_00031108 mRNA upstream 312354 31942426 ~ 31952001 (+) False XLOC_015565
TCONS_00031121 mRNA downstream 477135 32743807 ~ 32756706 (+) True XLOC_015575
TCONS_00031123 mRNA downstream 513466 32780138 ~ 32790887 (+) False XLOC_015577
TCONS_00031125 mRNA downstream 530201 32796873 ~ 32799083 (+) True XLOC_015578
TCONS_00031126 mRNA downstream 559563 32826235 ~ 32834441 (+) False XLOC_015579
TCONS_00031128 mRNA downstream 569007 32835679 ~ 32838894 (+) True XLOC_015580
TCONS_00031110 other upstream 315900 31942459 ~ 31948455 (+) False XLOC_015565
TCONS_00031085 other upstream 919159 31330923 ~ 31345196 (+) True XLOC_015548
TCONS_00031082 other upstream 933397 31271082 ~ 31330958 (+) False XLOC_015548
TCONS_00031079 other upstream 1155941 31107929 ~ 31108414 (+) True XLOC_015547
TCONS_00031078 other upstream 1162782 31101088 ~ 31101573 (+) True XLOC_015546
TCONS_00031118 other downstream 338175 32604847 ~ 32608027 (+) False XLOC_015571
TCONS_00031119 other downstream 435148 32701820 ~ 32703332 (+) False XLOC_015574
TCONS_00031120 other downstream 435179 32701851 ~ 32707411 (+) True XLOC_015574
TCONS_00031122 other downstream 491991 32758663 ~ 32760332 (+) True XLOC_015576
TCONS_00031124 other downstream 523691 32790363 ~ 32790886 (+) True XLOC_015577

Expression Profile

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