RNA id: XM_036978205.1


Basic Information

Item Value
RNA id XM_036978205.1
length 5405
RNA type mRNA
GC content 0.50
exon number 25
gene id eps15
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 69025921 ~ 69050378 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGCTGCAGACAGTCGCGGGAGCAGCGCCATCTGAAGCTGATTGAATGACCCCCATTCCAGTACACAAATTCCAGTGCCTCGTTTTTAAAGCTGCCTCTAATCTATCGTTACGCAGAATGAAGTAGTGGGAACAGAAACATTATGGCTGCCAGTCTTTCCCTGACTCAGCTCTCAAGTGGAAATCCTCTCTATGACAAATACTATCGACAGGTTGACCCGTCTGGTAGTGGACGGGTGGCAGCTGCTGATGCAGCCTTGTTCCTGAAGAGATCAGGCCTGGCAGACCTCGTCCTGGGCAAGATCTGGGATTTGGCAGATTCAGAACGCAAGGGGTGCCTTAACGATCAGCAATTCTTCATTGCTCTCCGGTTGGTGGCCTGTGCTCAAAATGGACTGGAGGTGGCACTCAAGAGTCTCAATTTGGCAGTTCCTCCCCCAAAGTTTCATGACACAAGCAGCCCACTTCTACCTGGGGGAGTGTCCATTGACAGCCCATGGGTGGTCAAGACGGAAGAGAAGCTGAAATTTGATGCCATATTCGAAAGCCTCTCCCCCGTTGGTGGAATGCTCTCTGGGGAGAAGGTCAAACCAGTGTTGCTCAATTCCAAACTTCCAGTGGATGTACTGGGAAGGGTATGGGAACTGAGTGACCTAGACAGAGATGGTATGCTCGACCGAGATGAGTTTGCTGTGGTCATGTACCTGGTCTACAGAGCTCTGGAGGGGGAGCCCATACCCATGTCTCTGCCTGCTACCCTTGTGCCACCCTCCAAGAGGAAAAAGCTCCCTGTCTCTGTACCCCCTGTGATGCCCCTTTTACCCTCGCCCCCCTCCATCAAAGAGAGACGCTCCTCCCATTCCGGGTCCAAAACCCTGCCCTCCAAACCAGCAGCGACCCCAGTCACATGGGCTGTATCTCCTCCAGACAAAGCCAAGTATGATGAGGTTTTTGCAAAGACCGATCTTGACATGGATGGTCTGGTGTCTGGGCCTGAAGTCCGAGATATCTTCCTAAAGACTGGCTTGCCCTCCGCCACACTAGCACGCATCTGGGAGCTCTGTGACATTGGGGACATAGGGAAGCTTACCAGGGAACAGTTTGCACTAGCGCTGCATCTAATTAACCAAAAACTGACCAAGGGTGTGGACCCACCCCAGAACCTCTGTCCTGAGATGATCCCTCCCTCAGACAGACTAAGCGTTGCAGCCAAGCAGAGCAATGCAGCAAATCTGGCAGCAGACTTTTCTGCCATCAAGGAACTGGACTCGCTCAGCAATGAGATTGTAGATCTACAAAAGGAGAAGAGCTCTGTAGAACAGGACATTAATGAAAAGGAGGAGCGCGTCAGAGAAAGGACCAGTGAAGTCCAGgagtTGCAGAATGAGGTGCAGAAGGAGAGCGGGGTGCTGCAGCGGCTGCAGTCTCAGCGCCAGGAGGTCCAGGATGCTCTGGAAGAGCTGGACCAGCAGAAGACCACTCTGGAGGAGCAGCTTGGTCACATCCGCCAGCAGTGCAGCCATGAGAACCAGCTGatctcATCACTAGAGGTGGAGCACGCGGAGCAGGAGCAGAGGATAGAGGAGTACGAGGAGCAGCTGGTGCAGGCCAGAGAGGAGCTGCTTCGGCTGCAGGAGGAGACGCAGCATTTGGAGGAGAAGGTGCAGGCAGCGCGTGAGCAGCTCACCCCCTTGCAGGAGTCTGTCCGAGACTCCTTCTCTCAGGTCTCTCAGGTGGAGCAAAAGCTGAGTGATCTACAGTTGGAAGAGAGGACAGTCACATCCCAGCTCAGCTGGAAGAAGGCCCTAGAGGAGGATCCAGTGCTGGTGAATGGTTCAGTGGATGAGCAGCATCAGGAGGACCAGGCAGAGGAGCTGAGAGTGGAGCCTCCAGCCATCCAGCCACAGATGGGGCCTGCTGAACCGAGAGAAGAACAGATAGAAGTAGTGAAGGAGGACAGGTCTAAGACCCCAGAGGAACCGGTGCCTAAGTCTGATGCCTTCGAAGACCTCTATAACAGCCTGTCTTCCACTACCTGGCCAGTACTACAGGACAACCCTGTGAAGGCAATAGATCATACTCTGAAATATGAGCACATTAGTCCTGTTGCTTTCACTCTCCAGGAGCAGAGAAGTCCTATGTCTGAAGTTGAGCAGGTGGAATCCCCAGAGCCAGAGGGGAGACCAGAGTCAACTGAGCCTCCGCAGGCTACCCCGCCTGCCCTGCCCCCACAGaccactccccctccactccctacCCAGCCTACCATGTCCCCAACGACCAGCCCCCCTCCGCTCCCTGGCATGGACTTCTTCCAGTCAGACCCCTTCATTGACCATGATCCATTTAAAGATGATCCGTTTGGAAAGGCAGATGTTTCCTATCCATTTGGTGGAGACCCGTTTAAGGGCACAGACCCCTTTGCTGCTGACTCCTTCTTCAAGCAGTCTTTGGCTGCCCCCTTCCCTTCTGCTGACTCCTTCACCCTCGCCGACCCCTTCAGTGGCAGTGCCAGCCTAGCAGAGCCCAATCTGTTTGCCGCTCCGCTCAACAATGCTGCCGGAATGGACCCCTTCAGCTCCAAACCCCAAAACAAGGCAGCCAGGGACCCATTCAGTGCCAAGGTCAACAATGTGGATGCGGATCAGTTTGGATCCAAAATCGACTCCCTGGCAGAGCCAGATCCGTTTGGCTCGCAGGGCACAGCAGGGCCAGATCCCTTCAGCTGCTCCCAGCCAGGCTCTGAGCTCCCCACCAAGGATCTCACTGCAACAACTAATGACCCTTTTGCACCTGGAGGCACTGCAGTAAATACTGGCTCTGACCCAGATCCATTTGCTGCCGTCTTTGGCAATGAGTCATTTGGACTTGGATTTGCAGACTTCAGCGCACTGGCCAAGTCGAACAGTTGTGACCCCTTCGCCTCATCGAACCCGTCCAACAACAAGAACCTGTTTAAGGAGGACAGCCAGCCCAGCAGCCCAGATGTTCCGCCAGCTTTGCCCCCCAAGACGGGAACGCCCACCagacctccccctccacccccagGTAAGAGATCCTCCATCTCCAGATCAGAGTCGTCGGAGTCTTTCCACAGACGGGGACCATTTCTGCCCCAGGGCTCAGGAGATTCCCCTTTCTCCCAACCTGCCAAGGACACTGCCCAGGACCCCTTCGCCCCATCCTCACCCCGCCAGCCCGCACGGGACCTTGACCGATTTGCCAGCTTTGACAAACAGCAGTACCCTACCGAGGAGGACATGATTGAGTGGGCGACGAGGGAGAGTGAGCGGGAGGAGAAGGTGCGCTTGGCCAGACAGGCACAACAGGAACAAGAGGATCTGGAGCTGGCCATTGCCCTGAGCAAGTCAGAGTTCTCCTGAAAGACTCTGGTCACCCCTTGTGACCCAGCACGCAccaaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggagtgagGGATGGGGAAAACTGAACTAAAGGGCCTACTATTCGGTCCCAATTAAGATATTTGAGTATTTGCTCCTCGCTCCTACCCACCCACCAACCCCCACAATTCCACCAACTGTCTTTTTGTTTCACTCACAATTGGCATTTTCAGAGTTTGTCTATGTAATAACAAATCCTCATGTTTGTTATTTTTGGTGTTTGGCTGAGTAGTAGGTATAGAGATGATTGGCTGTTAGACTTCAGTAGTCCTCCTGATACAATCTccatgtctatactgtatgtgtagCTGTAATGTCCCCTCATTTCAACTACACAGACCATATTGCTAATAACCAACTGCAAAAGTTCAGTCCCCATCTGCATTGCTCTTGCCTGCTCCAGACCAGAGGGTATTGAGCTCTTTAAAAAAGATATTGACTTTATATGATTAACTCTAACAAGATAGGAAAAGAGTAATGCTCATCTAATTAATCTGGGTGAAAACCAATGTCAAATTGGAATCCATATGTGATCAAGCGTTGCCTGGGGCAAGTGACCTGAGTAGTTGTGCAAGTTGACTGCTTTGTGGTTGCCCCATTGATGACAACCCCAATGCAAAGAATTCCAGTAGTCTGGTCTTTCTGGTTCCTCACGTGTGTAGGTGAAAAAGGCTACTTTACATTTTGATCATAATCTTTGTGCAAACCAGAAAATACTCCTGACTTGCCCAATGGGTGCCTTTTCAGACCTTAATGTCAATCTCTGTCATTCATCTGGCTATACAccagacatctacagtacagaGTGAATTGGATTTCATGGctggggtgagatcttgcttgtgtaaaaaaaaacaatgttctTAGATGACCTGACGTATGTCCTTACGTCAAGGTCTACCAAACTAAATGAATTGGCGTTTTATGAGTAGAGTAGCAGAAGTCAAATGATCCAGAGGGTTGAAATGGCTAAGAGGACATCGTCTTCAGATAAACACTAATGTGTGAATGACTCCATGCATTAGGCAATTGGGATGGTCAGACTACTTCGACTACAGTTAACGTGATTGAATTTGTGCATATAGTTCTAATGACACTACTTACTACTAGTTGTTAACCTTTGTGCTCAACTCTCTTCAAAGTACCCTTTATTAATATTTATGTGCCAAACACCAGGCAGTGAACAAGACTCACATGGTTGTACAGGTGCTAAAAAGAACTAAACCAGTAAAACCACTTATGTCCAAACCTCTGCATGTAGCCCCAAATGTAGGCCACTTTTAATGATCTTGATATATAATCTGCCCCTCCCAACACTACGCACCAATACAGTCAAAAGACGAAGAACATGACAAAACTATTTTATTTTGTGGTTCATGAAGTAATGTTGTGTTAAATATCAGATGTCAAGATTTTGGAAAGTAGGTCGGTTGTACAGGAATAttattgaaatgtattttaaGTTGAAAGATACGATTGAATTGTTAGCTAGAAACTTGGATACATGTGTGAAAATACTTCCTACTAGAATAGCTGGTTTTGCCATCTTCTGTAATGTCTGATTCCAAATGTCACTATAATCTACAACATATGACACCTTGTCTCATCTCTTTAGAGATGCAATAGTTTAGTCATGTATTCTGGATAAAGGAGTTTTTCCTGTACTCTGGCTCAGAAATACTCCTGGCCCCACTATGGAAAATTCTCCCTTGTTTTATATACACTGCATTTTCAACACGTCTAGTTTTAGGTGAATACAGCCGTCAGTAGGGGGTTCCGTTGTAAAGCAAACGGCTGTCGCTGCTCATGTTAGCGTTGTAAAGCTACGCatcttttttgtgtgtgtttcactGAAGTGATTCCACAGTGTTTGACTGCATTTCAAAGTCTTAACTGACTGAGGAAAGTATCCGTTGCCTGTTTGTACAAAGGCTGTTCTTCTGTCTGAacttcagggggggggg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU489688 lncRNA downstream 198271 68826974 ~ 68827650 (-) True G432389
TU489659 lncRNA downstream 219601 68806014 ~ 68806320 (-) True G432377
TU489617 lncRNA downstream 276938 68748558 ~ 68748983 (-) False G432338
TU489349 lncRNA downstream 642159 68345154 ~ 68383762 (-) True G432084
TU489227 lncRNA downstream 856846 68168805 ~ 68169075 (-) True G431968
TU489754 lncRNA upstream 455 69050833 ~ 69053884 (-) True LOC110522990
TU489772 lncRNA upstream 97252 69147630 ~ 69149826 (-) True G432448
TU489745 lncRNA upstream 132546 69182924 ~ 69186959 (-) True LOC110524437
TU491062 lncRNA upstream 418665 69469043 ~ 69469372 (-) True G433669
TU491063 lncRNA upstream 419386 69469764 ~ 69470321 (-) True G433670
XM_036978194.1 mRNA downstream 1977 68979017 ~ 69023944 (-) False ttc39a
LOC110522990 mRNA upstream 162 69050540 ~ 69054216 (-) False LOC110522990
XM_036978211.1 mRNA upstream 15638 69066016 ~ 69076183 (-) False LOC110524435
XM_021604051.2 mRNA upstream 15638 69066016 ~ 69076209 (-) True LOC110524435
XR_005051963.1 mRNA upstream 34804 69085182 ~ 69085265 (-) True LOC118964770
XM_036978217.1 mRNA upstream 36581 69086959 ~ 69104940 (-) False LOC110524436
TU489837 other downstream 19815 69004619 ~ 69006106 (-) True G432513
TU489614 other downstream 270864 68750217 ~ 68755057 (-) True G432338
TU489586 other downstream 318473 68699821 ~ 68707448 (-) True G432310
TU489232 other downstream 673176 68340204 ~ 68352745 (-) True bend5
TU488969 other downstream 1207797 67811486 ~ 67818124 (-) True lrrc7
TU491077 other upstream 472436 69522814 ~ 69524790 (-) True G433683
TU492773 other upstream 1940514 70990892 ~ 70991798 (-) True G435234
TU492700 other upstream 2017647 71068025 ~ 71068887 (-) True G435176
TU492901 other upstream 2178804 71229182 ~ 71230589 (-) True LOC110524478
TU492898 other upstream 2236012 71286390 ~ 71286992 (-) True il23r

Expression Profile