RNA id: TU489754



Basic Information


Item Value
RNA id TU489754
length 2028
lncRNA type sense_over
GC content 0.42
exon number 6
gene id LOC110522990
representative True

Chromosome Information


Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 69050540 ~ 69054216 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CTACATGTCATATGTTGGATGAGTGTCACAGAGACACAATTTCATAGCCTGCTCACTTTATGCAATATCAGCTTGACATGCTCAAAATGTAGTTCACATTTAGCTGACATGTTCTGATTTAGTGATTACTCATCAATGGGTTGCATGCACTCCCTCTGCTCTTTTCCCAGATCAACTACACAGGTACATGGCCCTTGCCGAGTGGCTCTGTCCTCATTACTCAGGTGACTTACTTACACCTGATTTTTGAATAACATTTCGCAGATGCCTGGAAAAGCTGATGGGTGGAATCTAAACACAAGTCAGACTATGGGAAGTTTGTTCTCACTGGTGGGAAATTCTATGGAGACGTTGACAAAGACAAAGGTGCCTCTGTCATTTTGTCATTTAGGCTCCAGCAATAGAATCTGGTGTGTCTAGCTGTTTCTCAATAGGTTGACACTTGATATGAGTATTTCTTGAGCGTTTTAAACATTTCAGGCCTTCAAACCAGCCAGGATGCTCGCTTTTACTCTGCATCCTCCCGCTTTGAGTCCGTCAACAACAAAGACCAGTCACTGGTAATCCAGTTTACTGTGAAACATGAACAGAACATTGACTCTGGTGGAGGCTACCTCAAGCTTTTCCCAGCTGATCTCAACCAGGAGGAAATGCATGGAGAATCCACAAACAACATCATGTTTGGATGATGAATATACCCACATGTACACACTGGTAGTCAATCCGGATAACACCTACGAGGTGGAGATCAACAACAAGAAAGTTGAGTCTGGAAGCCTAGAGGAGGACTGGGACTTCCTCCCCCCAAGAAGATAAAGGACCCTGATGCTGAGAAGCCAGATGACTGGGATGAGAGAACATTGATGATCCTGAAGACAAGAAACCAGAGGACTGGGATGTGGCTGAGACTATCCCTGACCCTGATGCCAAGAAGCTTGATGACTGGAACGATGAGATGGATGGTGAATGGGAGCCTCCCATGGTCACGGACCCTGACTATAAGGGGGAGTGGAAGCCCAAACAGATTGACAATCCTGCCTCCAAGGGGAAATGGGTGAACCCTGAAATTGACAACCCTGACTACACTGCTGACCTTGAAATATGCCAGCATGGGGGTGATTGGATATGTGGCAGGTGAAGTCAGGgactatttttgacaactttctCAATGAACCAAAGCTTGCAGAAGTAGGGAACGAGACATGGGGTGCAACAAAGGACCCTGAAAAGATGATGACGGACAgtcaggaagaggagagaaagaaacgGGATGGAGAAGAGATTAATAaaaaggagggagaagaggatgaAGAAATTGACTCTAAACACAAAGATGAGATGAACTTCTGAAAAGGAACCCTGTCTACTATGATCCATTGGCGCAAGGCTGAAGATGGGGCTTTGTTTGGCCTTTCCGTTAATGATTTATGCTTCTCCCCCAAAACAAATGGGTAGCTATTGTTTTGCCTACATCACAAGGGAAGGGGCGAAAACTAAGGACAGCAATTAGTTATGTTTCCATGTTATGTTGATAATCTATAGGAGTTCAGATTTGAGATTTGGTTGAAGATTTATTGTTAGAtttgagatttttattttttagcaGTGACATGCCAGTAATTGTTTTTGAAAGTGAAGTTTACAACAATTTGAATCTCATCTCTGAAAACAATGTTCTTCTGCTAACTACATTAAGTATATTGACCATCTCAAATTTCCTGACAATGTTTACctcaatgcattttttttgtgtatttaaaaaaaaaaatctgacacattTTTGTTGAGTCTGTGCTACCTGATGTCTGGTAGGTGCTTGTACCCCAAACATGTATATGGCATTATgatggtgtatatgtgtgtggagaGATATATTGTTTTGGCTATGGTGTGAAAGTCTACTGATTATCCTTTTCTGCAGCTTATTTTCAGCACTCATGGGGTCACTCTGTGTATTGGGTAGGCAGTTTTCACTAACTACTCAAGCTACCTTAAATCAAATGCACCTATTTTCTAAATTGAAAATAA

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU489688 lncRNA downstream 223183 68826974 ~ 68827650 (-) True G432389
TU489659 lncRNA downstream 244513 68806014 ~ 68806320 (-) True G432377
TU489617 lncRNA downstream 301850 68748558 ~ 68748983 (-) False G432338
TU489349 lncRNA downstream 667071 68345154 ~ 68383762 (-) True G432084
TU489227 lncRNA downstream 881758 68168805 ~ 68169075 (-) True G431968
TU489772 lncRNA upstream 93746 69147630 ~ 69149826 (-) True G432448
TU489745 lncRNA upstream 129040 69182924 ~ 69186959 (-) True LOC110524437
TU491062 lncRNA upstream 415159 69469043 ~ 69469372 (-) True G433669
TU491063 lncRNA upstream 415880 69469764 ~ 69470321 (-) True G433670
TU491074 lncRNA upstream 430453 69484337 ~ 69484789 (-) True G433680
XM_036978205.1 mRNA downstream 455 69025921 ~ 69050378 (-) False eps15
XM_036978206.1 mRNA downstream 459 69025921 ~ 69050374 (-) False eps15
XM_036978207.1 mRNA downstream 459 69025921 ~ 69050374 (-) False eps15
XM_036978200.1 mRNA downstream 842 69025921 ~ 69049991 (-) False eps15
XM_036978201.1 mRNA downstream 842 69025921 ~ 69049991 (-) False eps15
XM_036978211.1 mRNA upstream 12132 69066016 ~ 69076183 (-) False LOC110524435
XM_021604051.2 mRNA upstream 12132 69066016 ~ 69076209 (-) True LOC110524435
XR_005051963.1 mRNA upstream 31298 69085182 ~ 69085265 (-) True LOC118964770
XM_036978217.1 mRNA upstream 33075 69086959 ~ 69104940 (-) False LOC110524436
XM_036978215.1 mRNA upstream 33075 69086959 ~ 69105024 (-) False LOC110524436
TU489837 other downstream 44727 69004619 ~ 69006106 (-) True G432513
TU489614 other downstream 295776 68750217 ~ 68755057 (-) True G432338
TU489586 other downstream 343385 68699821 ~ 68707448 (-) True G432310
TU489232 other downstream 698088 68340204 ~ 68352745 (-) True bend5
TU488969 other downstream 1232709 67811486 ~ 67818124 (-) True lrrc7
TU491077 other upstream 468930 69522814 ~ 69524790 (-) True G433683
TU492773 other upstream 1937008 70990892 ~ 70991798 (-) True G435234
TU492700 other upstream 2014141 71068025 ~ 71068887 (-) True G435176
TU492901 other upstream 2175298 71229182 ~ 71230589 (-) True LOC110524478
TU492898 other upstream 2232506 71286390 ~ 71286992 (-) True il23r

Expression Profile


TU489754 Expression in all Baseline Samples

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TU489754 Expression in each Bioproject

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TU489754 Expression in each Sample
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The chart has 1 Y axis displaying Expression. Range: 0 to 150.
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