RNA id: XM_036978215.1


Basic Information

Item Value
RNA id XM_036978215.1
length 3748
RNA type mRNA
GC content 0.45
exon number 21
gene id LOC110524436
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 69086959 ~ 69135091 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aaagtctGTACTTCCTGTCAGAGAGAAGAGGATCCTGGATTAACTTTGCCTGCGTGTGCTGCTGCTCAGCTGATGTAGAACATACCACAGATGTACCAGACGATGCTTTTGGTGTCCCTGCTGGCAGTCTATCGGAGTAGAGAGTACTAGAACAGTCGTTTGTTTGcgtaagggaggagagaggagctttAGGGTCAGCTTTGGCCTGTGCATTTTGACTAGGCATGTCCCTCAGAGCTCTGCGTCCTGAGGCAGAGACAGGATTTGTTCCAAGTGTCCAAGACTTCGAAAAGAAACTTGCAGAGGCTGACGCGTACCTACAAATTCTAATTGATCAGTTAAAGCTCTTTGATGAGAAAATCAAGGATTGCAAAGAAGATGAGTCGCGCAGAAAAATTGAAAATTTGAAGGAAACCACATGTAGTATGGTAGAGTCCATCAAGCACTGTATTGTATTGCTGCAGATTGCCAAGGATCAAAGTAACGAACAGCAACACGCATACGGACTGATAAGCACCATCAACCCAGTGGATGGGATATTTCAGCCTCAGGACACTTCTTTAGTCAACTTAGCCATGCCAACACAGACCACCCTTCCCAAAGATGGCTCCAAGATTTGTAAAGGAGAACAGCGGCCATCCACTCTATCAGTGGGGCCTGTTGTCACGGTGATGGGCAGCCTGCAGACGCCGACCCCCAACAGcacaggGAGTGGCCCCTCGGCGCCCAGCAGCAGCGTTGCCTCCCCCAGTCACATGACCATCACCTCCCACTCGGTCCCTGACTTCTCTTACTCCAGCAGTGAAGACGAGTTCTATGACGCTGACGAGTTCTCCCAGAACAGCACGTCTCCCAAACACTTCCTAGATCCCTCTAGGCCTTCTGCTGCTTTGCCTCACAGCGATGATGGAACAGTGCTGAAACGACCAAACACTAACGAGTCCCTCGACTCCTCCATGTCTAACGGCACCACTGAcgcagATCAATTTGACAGCCATGATGATGAGGCGGAGGATCAGGGGGAGTCTGTGGAGGAGCACAAGAGTGTCATCATGCACCTGCTGTCCCAGGTGCGACTAGGCATGGACCTCACCAAGgtGGTCCTGCCCACATTTATCTTGGAGAGGAGGTCTTTGCTGGAGATGTATGCTGACTTCTTTGCACATCCGGATTTGTTTGTCAGTATCGCGGATCAACTGGAACCCAAAGAGCGCATGGTGCAGATGGTAAAATGGTACATGTCAGCCTTCCACGCAGGGAGGAAAAGCTCAGTGGCCAAGAAGCCTTACAACCCCATCCTGGGAGAGGTTTTCTTCTGCCACTGGGACCTGCCTTCAGAGAGTGAGGAGCCCACTGCAGTGGAGCCATCGTCAGAGGGTCCAGTGCCATGGTCTTCAGCCAACAGTGTGTCTTTTGTAGCAGAGCAGGTCTCTCATCACCCCCCCATTTCTGCATTCTACGCAGAGTGTCTGAGCAAAAAGATTCAGTTCAACGCCCACATTTGGACCAAGTCAAAGTTCTTAGGAATGTCAATTGGAGTCCACAATATTGGCCAGGgctgtgtgtcctgtctggaACATGACGAGCACTACATACTCACCTTCCCCAATGGCTATGGCAGGTCGATCCTGACTGTCCCATGGGTGGAGTTGGGTGGAGAGTGTAACATCAACTGCTCCAAAACGGGCTACAGTGCCAGCATTGTGTTTCACACTAAGCCCTTCTACGGTGGCAAGAAGCACAGGATCACCGCTGAGATCTTTCCTCCCAATGACAAGAAGTCGTTCTGCTCCATTGAAGGAGAGTGGAATGGAGTTATGCACGCTAAGTGGGCATCTGGGGAAAACTCCTTGTTCATTGACACGAAGAAAATGGGCTGTATCAAGAAGAAGGTGAGGAAGTTGGAGGACCAGTTGGAGTATGAGTCCCGCAGCCTGTGGAAGGATGTGACGGTCAGCCTGAAGTCGAGAGACATCGATGCAGCAACGGAAGCAAAGCACAGGCTGGAGGAGAAGCAGAGGGGGGAGGccagggagaggaaggaaaatgaaATGCAGTGGGAAACTAGGTTGTTCCATGAGGATGGAGAGTGCTGGGTCTACGATGAGCCTCTACTGAAAAGAACTGGATCACAGAGGCACTGAGGCCACAGATACAGATCTCGGAGTCTTAATAAGAACTCTTTTTCAAACCACTTCTTATCCAGGCCTTGGAATGACTGATGATTGAACATGTACACAGCTTTGCATTTTCAAAGTTAAAATGGAATGAAATTAAGAAGAAACATCTACGATGTAAAAAAGAAAACCCCTTGTTTTCGCCaacaccacctccacctctccatcccctAAACGACTAAAAGAAGCATAATAACAAAACCAGTACCAATGCCCTTCGGCTACACAAACAAGCTCTCACAATCTGTCAGGAGGATCCCACGAGGGTCCCTGAGGGGGAGGGTGTTTTGATTGAACAATCCTTGAAAAACAGCATTCTATATCTCAGGGAAACTGGTGACTGAGGAATGAAAGCTGTACCTCTGGGAGTTTGACGGCCTTATGGTGGAATCACAAGGGGGAGAACTTGGCTTGCCTACAACTAGCTACAGCTGTTTATATATAGATACATATGatgaatatatattattttttatttcctttCTCTTTCCTTATGGCAATAGTAAATATTTGAGGAAATTAACTCTGTGGCAACACATCAGGAATCATTCCATTTCCCCTGCTACATTTGTCCCCTCAAGTTCGTCGACATTGCCTTTCCCAATGTACTAACTTACCCTCTAGTGTGTGTTTATCTGCTCAAGAGGACCAGAAGAACCCAAGAAGTATGCATTTGCAAGATAGACAGAAGGTGGAGTCGAGGAAGAGGACTTGTCTCCATGTTGATTATTTTCCCTTTTGGCATTTATGaacaaatgtatgttttgttttttgtttttcagaTGATTGGGTAACATGTTAAGGAGCTTTAATGAGAGTAGGTTTTATTGAGTGCTGCTAGTGTCCAAATTTGGTTGAGGGTGCAAAATGTGCTTTCCAATTGTTGTTCAATAGGAAAGCATATAATAGTCTCATGTCTGCTTTCAAAATAATGGTTAATTCCCAATTCAGTGCAACATCATTTTAACCTCAATAAGCAGATGTTTGGATAAGTACCTAAAATAAAATACAGATTTTTTTCACTTGAGCATATGAATCATTATGTATATTTGTGGATATTCTTTAGCGAACCCATTATGTGCAATATTGTAAGCTAAAGTCAGATATGTTCATTTACCCCTCGGAAGACATTTTTATCAGTAAGCAAGGCCAGGTTATACAGTACATGAATGGAATTTTTGGTCAGCGGAAAGGAGTTGTGACCGAAACAATGTGTAGGGATATAGAGCACATTCCTGCTGAATACACGCATGCGATGATTGCCTGCGGTGAAAAACTCAAATTCAGGTGGATTTTCATCCTATTCTCTATAAAGTAGGTAAAAACTGTGTCTTCTAAAATAGTAGAATTTACAGAgtttacacacaaaaaaagccATTATTTTTTCATGTTATGTCTTTGTAAATTAATATTGAATTGAGGCCTTGCCATACATTTCCACAGCACTGTTTCGCTTCAAAGGAGCAATCAaaacaatgtattttttatttccttGAAATCATAACACTCGATTGTATCGCATTTTCATGTTCATTGATGCAAAATATTAAATCTCCCTGAGTTTACCTCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU489754 lncRNA downstream 33075 69050833 ~ 69053884 (-) True LOC110522990
TU489688 lncRNA downstream 259309 68826974 ~ 68827650 (-) True G432389
TU489659 lncRNA downstream 280639 68806014 ~ 68806320 (-) True G432377
TU489617 lncRNA downstream 337976 68748558 ~ 68748983 (-) False G432338
TU489349 lncRNA downstream 703197 68345154 ~ 68383762 (-) True G432084
TU489772 lncRNA upstream 42606 69147630 ~ 69149826 (-) True G432448
TU489745 lncRNA upstream 77900 69182924 ~ 69186959 (-) True LOC110524437
TU491062 lncRNA upstream 364019 69469043 ~ 69469372 (-) True G433669
TU491063 lncRNA upstream 364740 69469764 ~ 69470321 (-) True G433670
TU491074 lncRNA upstream 379313 69484337 ~ 69484789 (-) True G433680
XR_005051963.1 mRNA downstream 1694 69085182 ~ 69085265 (-) True LOC118964770
XM_021604051.2 mRNA downstream 10750 69066016 ~ 69076209 (-) True LOC110524435
XM_036978211.1 mRNA downstream 10776 69066016 ~ 69076183 (-) False LOC110524435
LOC110522990 mRNA downstream 32743 69050540 ~ 69054216 (-) False LOC110522990
XM_036978208.1 mRNA downstream 36968 69028253 ~ 69049991 (-) True eps15
XM_036978221.1 mRNA upstream 38450 69143474 ~ 69155698 (-) False LOC110524437
XM_036978223.1 mRNA upstream 38450 69143474 ~ 69158376 (-) False LOC110524437
XM_036978219.1 mRNA upstream 38450 69143474 ~ 69187251 (-) False LOC110524437
XM_036978220.1 mRNA upstream 38450 69143474 ~ 69187252 (-) False LOC110524437
XM_036978222.1 mRNA upstream 38450 69143474 ~ 69187253 (-) False LOC110524437
TU489837 other downstream 80853 69004619 ~ 69006106 (-) True G432513
TU489614 other downstream 331902 68750217 ~ 68755057 (-) True G432338
TU489586 other downstream 379511 68699821 ~ 68707448 (-) True G432310
TU489232 other downstream 734214 68340204 ~ 68352745 (-) True bend5
TU488969 other downstream 1268835 67811486 ~ 67818124 (-) True lrrc7
TU491077 other upstream 417790 69522814 ~ 69524790 (-) True G433683
TU492773 other upstream 1885868 70990892 ~ 70991798 (-) True G435234
TU492700 other upstream 1963001 71068025 ~ 71068887 (-) True G435176
TU492901 other upstream 2124158 71229182 ~ 71230589 (-) True LOC110524478
TU492898 other upstream 2181366 71286390 ~ 71286992 (-) True il23r

Expression Profile