RNA id: XM_036978220.1


Basic Information

Item Value
RNA id XM_036978220.1
length 6825
RNA type mRNA
GC content 0.50
exon number 12
gene id LOC110524437
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 69143474 ~ 69187261 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATTTGGTCAATGTTATGACAGTATTTCAAGAGTGTATATTCTAACGTTGAACAATAGACATTTCGTTTTTCCAGAGGTTTTACTTCATACATAAAAGTTGTGAACAATGCAATCATGATAGTAGTTGGTCTAGCGAATCTCGACAGAGGGTCTATGGTTGGTCCTCGAGCTGTCCGCCTAGTGGCTCGGAGGTCCTAGTAATGTTGGGGACAGGGATGGGAATGGAGTTTGGTGAAGGGTGAACCCCCCCTTCTTTGCGAAATAGCAAGCTCTATTCTGCGGTAAAGATGGCGGCGGCAGAGGGGGCGCGCAGTGGCCGGAGCACGGCGAAACGACCCTGAAGAAAGGCTCCATATTTCATAGAAACTCGGACGTGGGGGACCGAATATTACTGTCTCGAGATCCCACGGGCCGTTGGCAGAGAGTTGTTTTCAGTGATTTATCAGACTTTTGCTTTATTGTTTGAGGCAAGGTGGGTGGGTTTCACAACGATATAGCTAACAGCTAACGTCAGCCTGCTAGCTAGGAGACGGGTTGAGGAAGACTTCTGAACAGGCCGCTCCATAATTGGAGGATGTGAACTGGGAGTGTGCAGAGTTGGATAGCTTCGTCCCGAACATCTTTACACTGAACTGCGGGGATGGGACAACAGGTAGGCCGCGTTGGTGAGGGGACTTCGACAGGGCTGCCACCgccacaacaacagcagcaacaccCGGGGAAGGGGAACAGGGGAAATGCCGGGAGGAGACCCCGGGAAGTCAGTAACGTTAGCACTGGAACACCGCCAGGCAGGGTTGCTGCCGTTAACGTGCCGGACCCAGCAATTAATATATTCACCCAGCATTCAGCTGTCTGGCATGGGCAGGTAACAGTGCAGTCAGTGCTACTAACGAGGATTGGGGTTGTTATTCTGATCCCAAACAGAGTGATGAAGAAAGAGCCGTTTCAGGACTACACAGCTGCAAGCAGCAAAGGGACTGTTCACTTCTCCTGCCACTGAGAGATTTTTGTTAAACAATGATCTCTGCCACAAGGGGATGCAGTGGCAATTCCACTCCATTAACTCACTATGGCAGCCACAACAGTCTCACATTTCAGCCTGAAGAGGTTTACACATGCTCGGTTACAACATACTCAGCAGACAATTGCAGCTCAAAGACTTTTGCTCCGAGTCCCACTTGATCCTGTCAGGCTGATCCTATCATCTCACCTTGGCTGGACTGTGATGCAACaGGCCCTCCACCGACCCTTCGGCCTGGACTCGGCAGCGTTGACGGAGGCGGTGCGCTGGAGCTCCAAGGAGAACCTGCTGGGTGCTGCCGAAAGCGACCCTAACCTCTTTGTTGCACTTTATGACTTTGTTGCCAGTGGCGACAACACGCTGAGCATTACGAAAGGTGAGAAGCTGAGGGTGCTCGGCTACAACCAGAATGGGGAGTGGAGCGAGGTGCGCTCCAAGAATGGCCAGGGCTGGGTGCCAAGCAACTACATCACGCCCGTCAACAGCCTGGAGAAGCACAGCTGGTACCACGGGCCCGTTTCGCGCAGCGCTGCAGAATACCTGCTAAGCAGCCTCATCAACGGCAGCTTCCTGGTCCGGGAGAGCGAGAGCAGCCCAGGACAGCTGTCCATCTCCCTGCGCTACGAGGGGCGTGTCTACCACTACCGCATCAACACCGCCTCAGATGGCAAGGTTTACGTCACAGCAGAGAGCCGCTTCAGCACCCTGGCCGAACTGGTCCACCACCACTCCACCGTGGCCGATGGCCTGGTCACCACGCTCCACTACCCGGCACCCAAGTGCAACAAGCCCACCGTCTACGGTGTGTCGCCCATCCACGACAAGTGGGAGATGGAGCGCACCGACATCACCATGAAGCACAAGCTGGGAGGGGGGCAGTACGGAGAGGTGTACGTGGGAGTCTGGAAGAAATACAACCTCACCGTTGCAGTTAAAACACTCAAGGAGGACACTATGGAGGTGGAGGAGTTCCTGAAAGAGGCAGCAGTCATGAAGGAGGTGAAACATCCCAACCTGGTGCAGTTGCTAGGTGTGTGTACGTTGGAGCCTCCCTTCTACATCGTGACAGAGTACATGCCCCATGGTAACCTGTTAGACTACCTGAGGGAGTGTGACCGGGAAGAGGTGAACGCAGTGGTGCTGCTCTACATGGCCACGCAGATCTCCTCTGCCATGGAGTACCTGGAGAAGAAGAACTTCATTCACCGGGACCTGGCGGCTAGGAACTGTCTGGTGGGGGAGAACAGCGTGGTGAAGGTGGCTGACTTTGGGCTGAGCAGGCTGATGACAGGGGACACGTACACGGCCCACGCCGGAGCCAAGTTCCCCATCAAGTGGACCGCCCCCGAGAGCCTGGCCTTCAACACCTTTTCTATCAAGTCTGATGTGTGGGCTTTCGGTGTGCTGCTGTGGGAGATAGCAACGTACGGTATGTCTCCGTACCCAGGGATCGACCTGTCTCAGGTATACGACCTGCTGGAGAAGGGCTAccgcatggagcagccagagggCTGTCCACCCAAGGTCCACGAGCTGATGAGAGCCTGCTGGCAATGGAGCCCGTTGGACCGACCCTCGTTTGCCGAGACCCACCAGGCTTTTGAGACAATGTTCCACGATTCCAGCATCTCTGAAGaGGTAGCAGAGGAGCTGTGTAAGACGGCCTCCTCTGGCCATGGCCCGTCACCACACTCCTTCAGCCACGACATGCCCCTGCTGCCCTCCAAGTCGCGCACGCTCAAGAAGCATACGGAGAACAAGGAGAACATCGAGGGGGGTCTGGATTGCAGGcaggagacacacacagccagcacCCACAGCCCCTCAGGTCTGGCAGCCACTCTGCTGGCAGGGGATGGCCGGTCAGGCAGCTCTCCTGCTCTGCCTCGGAAACAGAGGGACAAATCCCCCAGCAGTCTCTTGGAGGACTCCAAGGAGACCACGTTCACACGGGACCGCAAGGCTGGCTTCTTCAGTTCCTTCATGAAGAAGAAGTCTTCCTCCAACTCTCCCTCCTCCCAGCTGCAGCAGAGCCTGCCTACGCCACCCAAGAGGAGCAGCTCGTTCAGGGAGATGGAGACCCAGCCTCACAAGAAGTATGAGCCCACGACTGGCTTTAgcgcccctcctcctccccttccccaggCAGATGGCCTGGGCTTTTCACCGTCCCACGGAGAGGGGAACCACGTCCAGTCACGCTGCTGTGGAGCCACTTTTGGACAAAAGGCCTCTGCCAACCACACCTCTGGGGCGCCGCCCTCACAGGtgggcagtagtagtagcagcagctggGCAGGCCTGGCAGGCTTCTTCACCCCCCGCCTCATCAAAAAGACCTTAGGGCTACGGACTGGCAAGTCCACTGGGAccgaggaggggggtgggggaacCAAGCCCTTCCCCAGGTCCAATTCCACCTCCTCCATGTCTGCAGGGCTGCCTGACCTGGAGAGGATGGCTCTGACTTTACCCAGGAACCGCAGTAAGCCTCCTCTAGAGCGCACTGCCTCCACCACCTCGCAGCCTGAGAACGGGGCAGCACACACCTCTGAGACCCTTCTCCGTAACATGGATGAGGGAACAGCTCAGATCAGGGACCGGCCTAAAGCCAAGCTGCTTCCCCGGGTGGTGGGGGGAAGCTGTGGGGTGGTGAGAGCTCCTGGCGTTGGGAGTGAAGCAGATTCATATTGTCCCTCGGGGACTCTACGGGGTAGGGAGGTTCAGGAGGCAGGAGGACAGGACCGTCAGGGATGGTCGTCCCCCTCCAAAACAGTGGGATCAGGCCTGTCAGCGGCTCCACACAACCACAAGGTTCCAGTGCTGATCTCGCCCACACTCAAGCATGGCTCGGCCGATGTGCACCTGGTGGGGATGGACTCTCAGGGGAACCGCTTCAAACTACTATCAGAGCATCAAGCGGACCGGGACCGACCACGGCTGGTCAAGCCTAAATGtgccccacctccccctcccacTCTGCGCCTCCTTGGACACTCCTACAGCGGGGATGGAGAGGAGCAGGCCGGGGTGGCTGTGGAGGTCAATGGTGATGGGGTGAAACGGCCGGGACGAGTAAGGGAAGTTGGAACAGGGAGACCGTCAGTGCCGCCACCACAAGTGCCTCCACCTCCTTCAGCCTCTTCTTCCTCTGCCAACAACACTACCCCTACTAAGATGGCTAACGGTGCCACCAGCACTGGCTCATCCACAGTCCCCTCTGGTGGCTCTAAGCTTCTGCGTCGGACTCGGCAGCAGGCAGAGAGGGTTCAACCAGAGACGATCAGTAAGGAGGCTCTGCTGGAGTATGCTGAGTGCCTGAGAGGTGCCCTCCACAGCAGCCCTGAGCCCTCCTCCAGCAGCCAGGTCCTAGACGCTGCCCACCAGCTGCTAGACTACTGCTCAGGCTACGTGGACTGCATCCCACAGATGCGGAACAAGTTCGCCTTCCGAGAGGCCGTGGGCAAATTAGAGCTCAGTTTGCAGGAGCTGCGGGCATCGTCCTCCTCTGGAAGCGGAGGACCATTCAGTGGCCCGGCGGCTAGCCCTGCTCTGGACAACTTGCACAACTGCATCAAGGAAATTAGTGATGTGGTTCAGAGGTAGCCTCCGGACCCTTTCAAACATTTCCTTTTGTATTCCCTTTGTTGGTTCTATTAACATTTTGGGGACAGAGAACAATCTCAGAAGTACCTCAGAAAATCACTACAAATTGTTTCTCTTATTGTTTACAGTTGACTCTTTCTCAAAAATGCCAGTGGAAAACACTGTTCTATTCTTTGATCATAAACATTGTTGATACCAAACTAGAAAAATTATTGTTTTGCCCCAAATTGTACCTTTTCCACCAGGTTTTAAGGCCTTTCTTTTAACTGGACGTTGAGTATATCAGCAACGTTTTCAGTCCCAGAGTTGATAAAGAACAAAGTCAGTTTGAGTATCTGTCATTTACTAACTCAACCGAGAAACAAAGTGGAGAATAATGCATTCATTCTCCTGGCAACAATGAAAAGAGTCCCTGTGACAGGATGTCACTGTTCAAAACTATTGTCACCTGGGACATCGAGTGTTCCACATAATCAGGTCTACTTTCTCTGCCATTTGGTTTGATTATTTCAATGTCACAACGTTTGAATAGAAAATGTAAGCATTTCAATATTGATGTCCAAATTCCCTTGCACATGACCTAGGTATATGTTTGGAGCCTATGAGAAGAGCGAAGAGAGTGCAGGGTAGTACATGAGCAGGTGGTTTGGGACAGTTTCTAAGTGTCCTTGGACAGTGCTGAATTCCCTGTGGCCCTTTCCCTCAGTGCCTATAGTTTAAATGATTGAAAATCTGCAAATACAACTACTCCTTGACAAAATACTGATCTCATCACAAACTACAGTATGTCTCTAGCACATCAGTGATTTATTTGTACATTATTTGGTTTTAACTTTGGAATGGCTTTATGTATGAACTTGAATTTTAAATTATTGTTTTTTATTAAAAGCACAGAcctatttttaaaatgttatgtAAATATTTGCTTAATATCATATCCAGGAAAAAGTGAGGTCACATTTGCTTGGATAAGTGTTTGACTCTACAAAGAAACTGTAGTAGGAAGTTTATCACAGGACTGAGGCCCACAACCCCATctgaacatctgctaaatgaatGTATTATGTATTGTTATCTTCCTTTTTTGAGAAGATGCCATGTTTAATTGTTGTCTGGTCATCATTTCAGTACCAACATCAGTCAATGCTTATGGTCAATTTACAAAATTGATTCTTAAAGCACGTTTTCTGTTTTGATATCCCTTAGTAGGTGTCATCTCTACACAAACATTTCCATATCAGGTTGCTGGATGTAATTTCATCCTGTTTGTTCTATTGTGCACAAATAACAAGTTTCACCTGTGTCTGCAATCATTTCTCAATAATAATTTGGCTAATGAATCAAGCaatcaaaaacaaaaaaagcTTGCTTATAACAGAGTGCTCCTCAACTGTTTAAAAAATCCCCTAATCCCCACTTGAGATGTTGGAACCCTAAGTGTATCAAAAGGGGATCATCGCGCTCTCCCAGAAGCTTGACTAGTATGTAAAACCTACAAATTCAGGCAAACAAAAGATGTAATGGGTCTACACTCAAAAAGATGTCCCATAAAGCCTACTTAATTTATCCATCCCTTCACTCTTCCCTGCGTCAGGCACAGACGTCTCGGCCCTGTTTGTCGGAACCCTGAGTGTACACTGGATAAAGCCTATGATATAGTAGACATTGATTGGTATATTGCATTTCATCTTAGTATAAACTCTAGTAATGCCCAATATATTTTCACATTTCATTCCATTGTGGTACACTACCTATCTAATCCAGCAGATGAGCTTCAGTGTGCCTCTGGTGATTCAAAGGTCCTCTTGACTAATAGCATGAAATAGTTTATTTTCACTGGGAGGttcacttattattattattatctattttTATTTTGACACTGGATACAGCAATGTTTTTCCTATGGTTCTTGGTGCCTTTTGTGAAAGATATTTtatgtgtagtgcactactcagTTAAGAAACGGATATACAGCGATGTGTAATTGTAAATATCTTGTGCTTTTGTTTTCAGATGACAGATTTTGCAATGATGTTGTGGCCAAGTATAAATATCACTACAACGTGCATTTCTATTACTGGGAGTAAACATTTAGTTTTTTAATTTAAAACTCACATTTAATAGTATATTACTGTGAATTTCTCCCCATCAGTGTTAAACTTGATATAAATAAAATGTTGGAACAATTCTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU489754 lncRNA downstream 89590 69050833 ~ 69053884 (-) True LOC110522990
TU489688 lncRNA downstream 315824 68826974 ~ 68827650 (-) True G432389
TU489659 lncRNA downstream 337154 68806014 ~ 68806320 (-) True G432377
TU489617 lncRNA downstream 394491 68748558 ~ 68748983 (-) False G432338
TU489349 lncRNA downstream 759712 68345154 ~ 68383762 (-) True G432084
TU491062 lncRNA upstream 281791 69469043 ~ 69469372 (-) True G433669
TU491063 lncRNA upstream 282512 69469764 ~ 69470321 (-) True G433670
TU491074 lncRNA upstream 297085 69484337 ~ 69484789 (-) True G433680
TU491076 lncRNA upstream 298942 69486194 ~ 69486404 (-) True G433682
TU491078 lncRNA upstream 299154 69486406 ~ 69524790 (-) False G433683
XM_036978212.1 mRNA downstream 8383 69086959 ~ 69135091 (-) True LOC110524436
XM_021604054.2 mRNA downstream 8384 69086959 ~ 69135090 (-) False LOC110524436
XM_036978213.1 mRNA downstream 8464 69086959 ~ 69135010 (-) False LOC110524436
XM_036978214.1 mRNA downstream 10346 69086959 ~ 69133128 (-) False LOC110524436
XM_036978216.1 mRNA downstream 38450 69086959 ~ 69105024 (-) False LOC110524436
XM_021604066.2 mRNA upstream 610 69187862 ~ 69196337 (-) False soat1
XM_021604067.2 mRNA upstream 610 69187862 ~ 69198259 (-) True soat1
XM_036978226.1 mRNA upstream 11235 69198487 ~ 69228669 (-) False si:dkey-21p1.3
XM_036978233.1 mRNA upstream 11445 69198697 ~ 69221155 (-) False si:dkey-21p1.3
XM_036978232.1 mRNA upstream 11445 69198697 ~ 69221369 (-) False si:dkey-21p1.3
TU489837 other downstream 137368 69004619 ~ 69006106 (-) True G432513
TU489614 other downstream 388417 68750217 ~ 68755057 (-) True G432338
TU489586 other downstream 436026 68699821 ~ 68707448 (-) True G432310
TU489232 other downstream 790729 68340204 ~ 68352745 (-) True bend5
TU488969 other downstream 1325350 67811486 ~ 67818124 (-) True lrrc7
TU491077 other upstream 335562 69522814 ~ 69524790 (-) True G433683
TU492773 other upstream 1803640 70990892 ~ 70991798 (-) True G435234
TU492700 other upstream 1880773 71068025 ~ 71068887 (-) True G435176
TU492901 other upstream 2041930 71229182 ~ 71230589 (-) True LOC110524478
TU492898 other upstream 2099138 71286390 ~ 71286992 (-) True il23r

Expression Profile