RNA id: TCONS_00033589


Basic Information

Item Value
RNA id TCONS_00033589
length 2480
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id XLOC_015573
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 32644925 ~ 32647404 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAACTGCTCAAATCTGCCGCTACGAGTCTCAAGCGCTGTTTTTCACTTGCAAATCTACATTTCGCTCTCTCGCTCTTCTGCACCAAAAATCACTGTGACATTTGGTGCAAAAGTTACTTGTGTATCTGCCAACCAAAACGTGGGCTCTCAGAGAAATTCAGCCAATAGGGGATGGGGCGTGACGTCACCGCTCTAGCGCTGCGGAGGCTGAACGTCGAAACCGAAACCCCCTTTGCGAGATTCGCTGCATCTATACCTGATTTGCGTTCAAAAATGCCTGCTTAATTATTTCATAGTAGGAGCAAACATGCCTTAAGAAAAGGAGTAGGTTTGAAACTTTAGTAACCATAAAAAGTACGCCAGGTGGATGCCTTTCTACTCCAGGAAGCCGCAGCCTACGGCCTGAAGGAGGAAGAGGACGCGGTCAGTTTGAAATGTGAGTATTAAACCAAAGACAGTTCTTTGTGTTAAACTCGTATTTGTTGAGCTACTGTACAGTGCACTGTAGAATTGCTGAGGGTGTAAAGAGGCTTTAAATTAAAGTCTATTTTATTTCGCTGTAAATGTTGACTGTGTAATGTTACGGTCTCCAATCAGCACATATAAAGTAACGTTTCAAAGGTAAAAAAGATTATTATCAAATGTCTGACAGAAAAATGTGAAGTATTGCAGATCACAAGACTAAACAGACATCTGAGTGAGTGATGTATTTGTGCTGATGTAGAATCTGCTGTCAATTGACTGTTgccaatactgtttaaattagatACATGTATTCTTACTAAAAGAGAATAAAGGGTCATTTGTTTAATCTGTGCATCAGTATATAGTTGATCACTTGAGTAAGGTTTGTGTTACATCAGCAACTACACCAACATGTTATTTGAGCATGTGAATCAGAGGTGATTTATTCTAGTCTTTATGTTACAGGGAGGCTTTTATTGAGTACAGTACAGAAactacaaaaacatattttacatttgctatttattattagttattgtattttcaaACAGTGTTTACATTAGCTTTCTGattactggtgtgtgtgtgctttttctgcagagctgaatcgATGACATCCTGAAAGCAGCAATACAATTAAGGTACGTTTTCAttgcttcattttttaaaaccacttaTAGTTGTACAGTTTGATGTTAGTTTAAATATAACTATGTTAGTGATCAGTATTCATACCTAGGATAACAATTCTTGTTTTACGAAAGGTAACTTGGCTTGCTTGCCCTAATGTCATGTTTGCTATTTAGTCTTATCACATAATATGATTAAACTATTTAATtcataagctatatttattttagaaaaatggcAGACCAGGGTGCATCCAATgcattgaggtgaagttggttttattgttgcacattctgactttcttcttaataatttaatttcagaaaaagattttcaaattctatatagggaaatcatattagcagccaatgactatcaaaatacagcactgtccacagtcaaataaatattagttctaatgttgttttgaagtcattcagaccaaatatttaaagtaccatggtaaacaatatagggaccattaaaatgtttaaatgcaaatataaaccATCTTTACCTTAATAACTAACGCTACCATGTTTTATGATTCATTTTACACtccaaaaaatgtatgtttacttAACATTTTTACCAAGAATGTATTGCTAGTAATGATAAATGTGGACAATTAACTAAGTAAATCTACTAGTAGTCACTAGACAATGCATCTTATTTTCgtacatttctgtttaacaatgGGAATGCATACAATATTGaaagtattatcattatttattgaaaacaaacagaaacataattatattattaaaagaatGAATATGAGTAATCATGACAAATAAATACAAGTCACCAACACATGAAACCAAGCTTTATTCTAACAGTGATGTATTACAGACAGAAGCCCATGTTTTGCTGTATCTCCACACAGCTGGGCCAGTTCTTCAGATGATCAGAGGGACTTCGCCATCATCACATCCCTCATTGCTGCAGTCAGACTGAAACAGGACGGTGATGCATGGCAGTCCATGCCCGAGATACGGATGATGAAGAGACCACAGCAACATCTGGTCCAGATGAGGACACAAGGGCATGTGGACTGATGCAGGGTCTCGTTCAGTTCACTACAGGAGAACAGGAGTGGCTAAACTCAGTCTAGAACTGCTGCTGTCTTGCAGAGTTTAGTTGAAGTTGactctaaactctgcaggacaccagctgtccagaactgagtttgggcacccctgcattaCAGCATTTCCAAGATGCTGCTGCATGTGGACTTCTTTACCCTCACCACACACACCaatctgcagatatttcagatcaaacaaaacataaaaaacattcaaaaaacaaTGTCATTTTACTGTACAATGTGTCATTTGATTTCTGTAGTGCTAGTAATAAAATTATCCTACCTCTTA

Function

GO:

id name namespace
GO:0043034 costamere cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033588 lncRNA upstream 7420 32637080 ~ 32637505 (+) True XLOC_015572
TCONS_00033587 lncRNA upstream 36898 32604867 ~ 32608027 (+) True XLOC_015571
TCONS_00033585 lncRNA upstream 253951 32385688 ~ 32390974 (+) False XLOC_015570
TCONS_00033586 lncRNA upstream 253951 32387279 ~ 32390974 (+) True XLOC_015570
TCONS_00033584 lncRNA upstream 378253 32264355 ~ 32266672 (+) True XLOC_015569
TCONS_00033590 lncRNA downstream 54416 32701820 ~ 32719974 (+) False XLOC_015574
TCONS_00031131 lncRNA downstream 206797 32854201 ~ 32862149 (+) True XLOC_015583
TCONS_00033591 lncRNA downstream 219171 32866575 ~ 32883571 (+) False XLOC_015584
TCONS_00033592 lncRNA downstream 219172 32866576 ~ 32985766 (+) False XLOC_015584
TCONS_00033593 lncRNA downstream 219172 32866576 ~ 33029428 (+) False XLOC_015584
TCONS_00031114 mRNA upstream 626554 32016256 ~ 32018371 (+) False XLOC_015566
TCONS_00031115 mRNA upstream 627331 32016516 ~ 32017594 (+) True XLOC_015566
TCONS_00031112 mRNA upstream 635209 31948352 ~ 32009716 (+) False XLOC_015565
TCONS_00031113 mRNA upstream 638613 31957554 ~ 32006312 (+) True XLOC_015565
TCONS_00031108 mRNA upstream 692924 31942426 ~ 31952001 (+) False XLOC_015565
TCONS_00031121 mRNA downstream 96403 32743807 ~ 32756706 (+) True XLOC_015575
TCONS_00031123 mRNA downstream 132734 32780138 ~ 32790887 (+) False XLOC_015577
TCONS_00031125 mRNA downstream 149469 32796873 ~ 32799083 (+) True XLOC_015578
TCONS_00031126 mRNA downstream 178831 32826235 ~ 32834441 (+) False XLOC_015579
TCONS_00031128 mRNA downstream 188275 32835679 ~ 32838894 (+) True XLOC_015580
TCONS_00031118 other upstream 36898 32604847 ~ 32608027 (+) False XLOC_015571
TCONS_00031110 other upstream 696470 31942459 ~ 31948455 (+) False XLOC_015565
TCONS_00031085 other upstream 1299729 31330923 ~ 31345196 (+) True XLOC_015548
TCONS_00031082 other upstream 1313967 31271082 ~ 31330958 (+) False XLOC_015548
TCONS_00031079 other upstream 1536511 31107929 ~ 31108414 (+) True XLOC_015547
TCONS_00031119 other downstream 54416 32701820 ~ 32703332 (+) False XLOC_015574
TCONS_00031120 other downstream 54447 32701851 ~ 32707411 (+) True XLOC_015574
TCONS_00031122 other downstream 111259 32758663 ~ 32760332 (+) True XLOC_015576
TCONS_00031124 other downstream 142959 32790363 ~ 32790886 (+) True XLOC_015577
TCONS_00031127 other downstream 179099 32826503 ~ 32827253 (+) True XLOC_015579

Expression Profile

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