RNA id: XM_036978225.1


Basic Information

Item Value
RNA id XM_036978225.1
length 6532
RNA type mRNA
GC content 0.52
exon number 63
gene id si:dkey-21p1.3
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 69198487 ~ 69228669 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTCCTTCCCTGCACATGAACAAAGCAGGactaacacacaccacacacaccaacagctAGCACTACCGTCTGAAAATAATTGACCAATGCATATGGAATATACTGATGTTTACGCGTAAGAAGATCCCTGGTGGATACTGACCTGACTGTCTGGAGCTACACACTGTACATAGGAAGTGGACCTGTCACCTTGTGAATTTGTTGTGTGGCGATTGTCTGCTGTGGTTGAGGGCTATTTTCCTGGTCATTCCGTCACTGCTATGGTCTGTGTCTGTGGGAGCCAGCCTAGAACTGGCCCTTGTCCAGGGAGGGGTCTGTTTTAGCACTGCACTGGGTGCTGAgttaagagtgtgtgtgagtgagagggggagaccTGTTCTTACTGCAGTCAGAGGGATCAACCGTCTGTCAGCTCTGCAGCGATGCAGGGCCCTGCCGTGATTCTGCTGCTACTCAGCTATGGCACCATACAACAGATGACCTTCATAATGGGTGATCCTACAGCAGCCAGACAGCACTGTCAAGACTACAACTCCACCTGCATccctcacacagacaaacagGAGAAAGTGATTTTAGCTGCTGAGAAGGTGCTTGGTCGAGTTGCGACCAGGGCAACATTCAGAGAAGAGTCTCATGGACCCAGGCTGAGAGATCAGACTGCAGAGCAGGACACAGCCAAGAACACTAACCTATCAGCACAGTCATTGCCATCCATAAGAGCTCAGTCAGttccagagacacagagaaagacaagGATAACACCTGAAACAGACAAATTAAAGCTCACTCAGAAGATAGGATGGCTGAATGAAACTTCCACACTGCAGGATGATAAAGCAGCAAAGATCACTAGAAACAGAACAGTATATTCACAAACCGCTGGATCTCTTCATCAGCCAAACCAAACCAATACAGCCAGAGATGTCTCTGGCATGAAAGGTGTAGTAGTACCATCTCAGACAGTGGAGACAGCCATTCTCAGTCCCACTGCATGGTCAGAAAACCCCACTGAACCAGCCCTGCTGATCCAGGAGTCAGACAGTGATGGAGAATCAATAGGCTCAGGGAGAAATACATCAGTGAGGTTAGATGATTTACAGATCCCACCTGAACCCAAACAGGGCTTTGGGCCTACAAGACAAACATGGTCCTTAGAACACACCATAAAACCCAACCTTTTGGAATTCAAGAAAATAGATGCGGAGGAGCTACTGAGGCAGGCTGTGATTCCTCTGCCTCCAGTGCTACCTCCAAATAATAGCACTGTCACAGGGAGAAAGACAGCACTGGAGGCAGAGGAGCCTCTGGGACAATCTCCAACACATCAAAACACCACTGGTATCACTTCCACATCAACAGGTGACAAAGCTTCAAAGAGACAAAGGGGCCAAAAGACTGTGACAAAGACTTTGACAGATTCTGGACAAGTCATGGAGAAGGGGGATAAAGTTTTATCCCAGGAGCCACCCACAGAGGATctagagacagacacagaaacaaagacagagtTCGAGTCAGCAGAAGAGATGGACACAGAAACAGAAATGGAAGAAATTGATGAGGACAATGATAAGGAatcagagacagaggaaacagatgTAGGCGACAGCAAGTTGGCACACAACATCACTCAAGTCAACACAAGGCAGTTTAAAAATAATGGAGGAGCCGTCAAAACTGATGTTCTAACTGAGCTCATGTCCCCGGAGCCGAGAGGATTAGAGCGGGAACTGCCGCCTACCCCTCTGCCTCCTGCCAGTGTGCCAGGTAAAGTACACAGCATATGTCCTTTGACACAGTACCCTCACAGCATGCACCCCTCAGACTCTCTGTGGGCCGAGTTTTACTTCTGTTTCCTCAGAGACACTGAGCAGAGAGGTCAAAGGGTCATCGCCATGACAGCAGGGGCAAGGACTCAACCTCTGACACAGGGTCTGTCTCTGAAAGCTCAGAGGATGCTGTACGAGTCCAGGATGAACACCCTGTCCGTTCCTGtcgtttcagccaatcatcaaCCAAAACACGCACTCAAAGAGCGAGGGACAGCCTATAGACCGGGGCTTCGAGTGCAACAGGGCTACGCTGGCGGGATGGGCCGGACTGGACGCACAGGTTACCGAGGCCCCATTGGTCCACCAGGGATGCCCGCCATCGTAGTGTTCAAGAGCTCTGAGGAAGAGTGGGAGAACTTCAAGAAAAAGACATTCTACAAAAAGCTTGTTGCAACTTGGCCGAGATTGAAGGGCCCTCCAGGGCCCCTTGGCCCCCCTGGGGATGCTGGACCTCCTGGACCCCCGGGAATGACTGGAAAACAAGGACgaaaaggagatggagggaaaatCGGTGGTCCTGGACCACCAGGGATGCCCGGGCCTCCAGGAAGAACTGGGAGTGATGGGATTGATGGTATAAATTCTGATGATGGCCCTGCAGGACCACCTGGGGAACAGGGTCTCCAGGGTTACAGAGGAGAGAAGGGCAGCAAAGGGGAGCTGGGTGAGTGGGGTTATGAAGGGGAACCAGGACCCCAGGGAAACAGAGGCCGGAAAGGAGACAAGGGGAATAAAGGAAACCGAGGGCTCATGGGGATCACTGGATACATAGGAATACCTGGAGCCAGAGGGCAACTGGGCTACCCAGGAACATCTGGACCTCCTGGAGACATCGGTGGCATTGGTTTTGTTGGATCACCAGGCCCTCCTGGCAAAATGGGGCCAAGAGGGCCAAAGGGGGTACCAGGAGTCAATGGACCACCAGGCCAACCAGGTGAGCGAGGCCTAAGGGGACCACTCAGGCCTCAGGGAGAGCCAGGTCCTGATGGGATTGTTGGATTCCCTGGCGTTCGTGGACCTCAGGGAAAAACAGGTGCAGATGGGCCTACAGGTCCGAAAGGGGATCCCGGTGACGCAGGTGATGAGGGAAATATAGGAGAATCAGGACTCTCTGGGCTTCACGGAGCCAATGGCAAACCAGGAAAAACTGGACCCTCAGGTGACCCAGGGATCAAAGCATCTAAGAGAAGTGACAAGGGTGACCCAGGATTTAAAGGGGACCAGGGTCGACCCGGGCCTCCAGGTAAAAGAGGCTTTAAAGGCAGAGGAGGAGCATCAGGGCTGCTAGGTAATGTTGGACCAGTGGGGCCCCCTGGATTTCCTGGAACCACAGGTTATGATGGAATCATTGGGGAGAATGGTAAGCAGGGAAAAGATGGGCCAAAGGGTGGCAGAGGTCCTAGCGGTGGGCCAGGCGTTGTTGGACCTAGAGGTGATAAGGGGCGAGAAGGTCGAGTAGGATTTGCCGGTTTGCCAGGGCCTTTTggagagatggggaagtcaggagagagaggagctgaaggAGAACCCGGTATTAAGGGGAGGACTGGAATTCCAGGAGTCACTGGACTGAAAGGGCTGAAGGGACTTCAAGGCTATCTAGGAGGTAGGGGACTGGATGGAACACATGGACCCCCGGGACCCATTGGAGGAACTGCATCTGACGGGGATACTGGATCTACTGGACTAAGGGGAATGGTGGGGAAGACTGGGGCACCAGGGATTCAAGGTCCAGTTGGGAAGAGTGGGGATTCTGGTGGTAGAGGGATCACTGGTAAGCCAGGAAAGCCAGGAGTCAGGGGTGCCAAAGGTAAAGAGGGTCCGAACGGCCTTCTGGGAAATCCTGGCCTGAAGGGAAACAGAGGTCAAGAAGGTTCGAAGGGGAAACGCGGAAGTCCAGGCGTGCAGGGATTGACAGGGATACAGGGATACAGAGGAGCTCCTGGCATAGCAGGCAATATAGGACCATGGGGTGAGGTGGGCCTCCAAGGGCCACCAGGGGACAAGGGGCCCCCAGGATTAGTTGGGCCCCGTGGAGTTGTAGGTTACCCAGGTAAAGATGGACCACAGGGAGGTATTGGGCCATTGGCAGACAATGGGGATAAGGGGTCCAGAGGAGCTATCGGACAGAAGGGAGTTGCTGGTGTCGATGGTGAGGAGGGCCCGACTGGATTGTGGGGTCCAATGGGGCCACCAGGACTGAAGGGGCTACCGGGTGAAAAGGGGAAGATGGGCGCTCAGGGGGAAAGAGGTGGAAAGGGGATCCAGGGAGACAGAGGCCACCAAGGTCAAGAAGGACCAAAGGGCCCACTGGGGAAAGAAGGATACTTAGGGCCATCAGGGGACAGAGGGAAAGAAGGAGCTTCAGGACTTAAGGGCCAGCCGGGCATCAGAGGCCCTACAGGTCTCGCTGGGCGTTACGGACCAGGGGGCAACACTGGAAGAGGCCGTGCCAAGGGAGAGAAGGGGCTCCCCGGAACTACAGGGCCTCCTGGAAGGTTTGGGCCTACAGGCTTAGTTGGACCAAAAGGACCAACAGGTTTACCAGGAAAAAGAGGAGTCGATGGAAAAAGTGGACTTGGTGGACTTAAGGGAGATtatggggagaggggaaagactggggctggtggtatcAAAGGAGATGTGGGATTGCAAGGTCCAAGGGGGAAGAAAGGAGAGTCTGGAACAGGAGGCAAAATGGGGACATTGGGAAAGAGGGGGTTCACCGGGTCTCCAGGAGGTAAAGGCAGATCTGGGCCTGCTGGTGCCCCTGGAGAGAAAGGTGGTAAAGGAATAGAAGGGCCAAAGGGATTGCATGGCAGCCCAGGaaagaggggaggcaggggagttAGAGGCAAACCAGGAGAAGAAGGCCCATTGGGACCGGATGGACCAGTTGGAAGATCTGGAAAGCCAggacttgctggtttggaTGGATTGCTGGGGGTTGAAGGAAATGAAGGAGATAATGGTGATATTGGTTACAGAGGAACCCCTGGGAGGCCTGGTCTACCAGGGAAGATGGGTCAAAGTGGACAACCTGGATTGAGTGGTGGTCACGGAGCACCAGGGTCAAAGGGTAATCTTGGATCAAAAGGAAAACGAGGACCTGCAGGGCCAATGGGGCCAAGGGGTATTCCAGGGTTTGGAGGAGCAAAGGGGAAGTTTGGCCAGCATGGATCAAAGggtcaggcaggcggCAGAGGCCTGCAGGGACATATTGGACCGCGAGGAATCAAAGGGAATCCAGGACTGCCGGGGAATAAAGGGCAGCTAGGCCCAAAAGGCATACAGGGCGACATTGGTCCTCGTGGTCCACCTGGGAAAAAGGGCTTCCCTGGTCTACCTGGTCTCTTTGGAAATAGGGGAATGAAGGGGATACAAGGAATGCCTGGAGTTAAGGGACTGAAAGGTGTGCGTGGACAACCAGGAAAACCAGGTCCTCCTGGCCGTCCAAGAAACAGGCGACCTGGAGCCCTTGGTAAAAGAAGAGGATCCAAAAAACAAACTCGGGCCATGACCAGGAGAACGCTTACCTCACTGCCTGACCAGAAGCCAAGCAGCTCCATCAGCTGGCCTCAGGGCAGCAAAGACAGCCCTGCAACCACCTGCCACGAGCTGGGGCTGATTCATCCACACCTGCAGGATGGACACTTCTACATGGACCCTAACCAGGGCTGCCCATTTGATGCCGTGCAAGTCTTCTGTAACTTCACTGCAGGAGGGATGACCTGTATACCTCCTGTCCAGTCACAGATAATAGGAAAATGGGAACCagaaaaaaacatgtcaaaaaaGTATATCCAGTGGTTTAGCCAGCTTGATGGTGGCTATAAGTCTGAGTATGCTGGTCTTGATGTGGTCCAGCTCCGATTTCTACGGTTACACAGCCACTCTGCCTCTCAGCACCTGACCATCGCCTGCCCTTTTAACCACAATAGTAGAGAAATCAGGAAAAATGCAACAAACAGGGTTCTTCACTTTCTGGGAGACTCTGGTGGGGAGATTGGTTCAAGCTATATGACAGTATCGAAGAATGGTTGTGAAgtggaggtggaggtacaAGTGAGGGGAAGCACAGAGATCCACAGAGGGGACATGGAGCTGCTGCCCCTCAGGGATGTTCgtatggagggaaggggagaccACTGGGACACAGACCTCAGAGCTGTCCTGGGACCTTTGTGCTTTTTGTAGCCTCAGCTTATCCATAGAGAAGCAGCACGCTCTGACCAGTGTATGGGTCAAGAACATTTGGGTGCAATTCCTCTTCAGGACAAAAGAAAGAGATATCATAATTTTGTGTGATAGCTTTAGCATTTGTGTAATTGTGATAAAAACTAGAGCTATATAATAAAATGTAGTTTGAGTTATTTGTTAATCTTATCATATGTGTCTTTTATAAAGAAAAATATAAAGCTGTTGTGTTTATCTCCCGCATTTCTATCTTTTTTGAATGATTCATTTTTCTTAgtgatgtactgtgtgtatatatgctTCATATTAGATTCATGTGGATGTTGTATTTAATTGTTAAGCTTTTGTAAGTATGTCTTTGCTATTATTTGATGTCTTGTTTTTTTATTCCTGTCGACTAATACCTGAAGTCTTGATGAACACCAATATCTGGATGGTCTAAACTTCAAATTGTTATAAATTGAAATGTTTGTAAAGTAAACTGAAGTGACATTTCAATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU489745 lncRNA downstream 11738 69182924 ~ 69186959 (-) True LOC110524437
TU489772 lncRNA downstream 48871 69147630 ~ 69149826 (-) True G432448
TU489754 lncRNA downstream 144813 69050833 ~ 69053884 (-) True LOC110522990
TU489688 lncRNA downstream 371047 68826974 ~ 68827650 (-) True G432389
TU489659 lncRNA downstream 392377 68806014 ~ 68806320 (-) True G432377
TU491062 lncRNA upstream 240374 69469043 ~ 69469372 (-) True G433669
TU491063 lncRNA upstream 241095 69469764 ~ 69470321 (-) True G433670
TU491074 lncRNA upstream 255668 69484337 ~ 69484789 (-) True G433680
TU491076 lncRNA upstream 257525 69486194 ~ 69486404 (-) True G433682
TU491078 lncRNA upstream 257737 69486406 ~ 69524790 (-) False G433683
XM_021604067.2 mRNA downstream 438 69187862 ~ 69198259 (-) True soat1
XM_021604066.2 mRNA downstream 2360 69187862 ~ 69196337 (-) False soat1
XM_021604063.2 mRNA downstream 11436 69149960 ~ 69187261 (-) False LOC110524437
XM_036978218.1 mRNA downstream 11443 69143474 ~ 69187254 (-) False LOC110524437
XM_036978222.1 mRNA downstream 11444 69143474 ~ 69187253 (-) False LOC110524437
XM_036978240.1 mRNA upstream 10862 69239531 ~ 69350421 (-) False LOC110524442
XM_036978239.1 mRNA upstream 10862 69239531 ~ 69350548 (-) False LOC110524442
XM_036978236.1 mRNA upstream 10862 69239531 ~ 69350549 (-) False LOC110524442
XM_036978238.1 mRNA upstream 10862 69239531 ~ 69350549 (-) False LOC110524442
XM_036978234.1 mRNA upstream 10862 69239531 ~ 69350550 (-) False LOC110524442
TU489837 other downstream 192591 69004619 ~ 69006106 (-) True G432513
TU489614 other downstream 443640 68750217 ~ 68755057 (-) True G432338
TU489586 other downstream 491249 68699821 ~ 68707448 (-) True G432310
TU489232 other downstream 845952 68340204 ~ 68352745 (-) True bend5
TU488969 other downstream 1380573 67811486 ~ 67818124 (-) True lrrc7
TU491077 other upstream 294145 69522814 ~ 69524790 (-) True G433683
TU492773 other upstream 1762223 70990892 ~ 70991798 (-) True G435234
TU492700 other upstream 1839356 71068025 ~ 71068887 (-) True G435176
TU492901 other upstream 2000513 71229182 ~ 71230589 (-) True LOC110524478
TU492898 other upstream 2057721 71286390 ~ 71286992 (-) True il23r

Expression Profile