RNA id: XM_036978236.1


Basic Information

Item Value
RNA id XM_036978236.1
length 7097
RNA type mRNA
GC content 0.54
exon number 46
gene id LOC110524442
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 69239531 ~ 69350551 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGTGGGACTGAAATACtgcattatgtttttgaatattaCAGGTTACTGTATTTGGAAAACTGTGACTTTGAAATTAGATAGAAGAACAGTATTTATGTGAGGTATATTGTGACAAAGGATTCTTCCTTAACTTGTTGCTTCACTCCGTTTGAGTACATGATCTTAGCCACCATCATCGCCAACTGTATCGTACTGGCTTTGGAGCAGCACCTGCCTGGAGAGGACAAGACTCCCATGTCCAAGAGACTGGAAAAGACAGAGCCTTACTTCATTGGGATGTTCTGCTTTGAAGCTGGGATTAAGGTTGTGGCGTTGGGATTTGTATTCCATAAAGGATCCTACTTGAGGAACGGCTGGAACGTCATGGACTTCATTGTGGTTCTGAGTGGGATTCTGGCCACAGCGGGAGCTCACATGAACATCCCAGTGGACCTGCGGACCCTGCGGGCCGTACGCGTGCTCCGACCCCTCAAACTGGTCTCTGGAATCCCCAGCCTGCAGATAGTCCTGAAATCCATCATGAAAGCCATGGTGCCGCTGCTCCAGATCGGCCTGCTGCTCTTCTTTGCCATTCTCATGTTTGCCATCATCGGCCTGGAGTTCTACAGTGGAAAGCTCCACAACACCTGTCTGCCCATGCCAAATATCCTGGAGAATGAAACGGTGGACAAGTCAGAGTCAGAGTTCCCGTGTGGGGTGAGGAAGTGCCCTGACAAGTACGCCTGCAGTGAAACCTGGATCGGCCCCAACGATGGCATCACCCAGTTTGACAACATCCTGTTTGCTGTCCTCACCGTCTTCCAGTGCATCACCATGGAGGGCTGGACCACCGTGCTCTACAATACCAACGATGCCTTAGGCCCCACGTGGAACTGCATGTACTTCATCCCTCTGATAATCATCGGCTCCTTCTTCGTGCTGAACCTGGTTTTGGGAGTTCTTTCAGGGGAGTTTGCCAAGGAGAGGGAGCGGGTAGAAAACCGCAGGGCATTCATGAAGCTCCGGAGGCAACAGCAAATTGAGCGGGAACTCAATGGCTACCGAGCCTGGATCGACAGAGCAGAAGAGGTGATGCTTGCGGAGGAGAACAAGAATTTAGGACCTTCTGCTCTTGATGTGCTGAAGAGGACCACCATCAAGAGGAGAGGGTTGGATGCCGTCCACCGGGGCCCAGAGGAGGAGCAGTACGGTGACATCTCttctgtggGCATCCCGATGACCAGAGCCAGCATCAGGAGTGCTAAGAGAGGACCCACGGCTTATTTCAAGCGGAAGGAGCGTCTGCTGCGTATCTCTATCCGCCGCATGGTGAAGACACACACCTTCTACTGGACCGTACTGGGCCTGGTGGCCCTCAACACACTCTGTGTGGCCATCGTCCATCACAACCAGCCCCACTGGctgtctgtgttcctctACTATGCAGAGTTTCTCTTCCTGGGTCTGTTTCTCACTGAGATGTGTTTAAAGATGTACAGCCTGGGACCCAGACTCTACTTCCACTCCGCCTTCAACCGCTTCGACTGCGGCGTGATAGTGGGCAGCATCTTTGAGGTGATGTGGGGGTTCTTCAGGCCAGACATGTCCTTCGGCATCAGTGTGCTGCGCGCTCTCCGTCTGCTGAGGATATTCAAGATCACCAAGTACTGGGCGTCGCTGAGGAACCTGGTGGTATCCCTGATGAATTCTATGAAGTCCATCATcagcctcatcttcctcctcttcctcttcatcctgGTCTTTGCTCTGCTGGGCATGCAGCTATTCGGTGGCAGGTTCATCTTTGAAGACTACACTCCTACAAATTTTGACACATTTCCTGCTGCCATCATGACTGTCTTTCAGATCCTGACAGGAGAAGACTGGAATGAGGTGATGTACAATGGGATCCGCTCCCAGGGAGGAGTGAAGTCAGGAATGTGGTCCTCCATATACTTCATTGTGCTCACACTCTTTGGTAACTACACACTGCTGAATGTCTTCTTGGCCATTGCTGTGGACAATCTGGCTAATGCCCAGGAACTAACCAAGGACGAAGAGGACGAAGAGGCTGCTTTCAATCAGAAACATGCTCTCCAAAAAGCCAAGGAAGTTGGGGCCATGTCTTCCCTGATGTCATCACACAGGAGGAGGAGACCGTACCTGTACAGGAAAAGAGCGATACACAGGAGCCGGCCTGCCTACTCTCTGGAGGAGGCTGAGAGCCTCGCCGAGGGGCCCCCCTGCCCGCCATTGAATTCCTCTAACTCTTTCATgtccaggggagagaggagaagacggATGACCATGTCTGTGTGGGAGCAGAGAACCAGCCAACTGCGCAGGCACCGGCAGATGTCCAGCCGAGAGATCCTCTTCAGCAGCCCCAGTGAGGAGCAGGAAGCGCCCCCTGGATGCCCCCACAACCTCAAAGCCACAGGCACACCCACAGGCAGCCTGAAGCTGGCTGACCCCACGGCTGACCCTACGGCCTCCACAACTCAGCCCCCCAAGCCCATGGACCAAACTCTAGAGGAGCCACCCCTGTCCATGGGGGTCCTTGAGCCCCCCTTGTCCCTCCCTTTAGCAGAGCCACCCATACCCATCGACAGTCCCCTGCCTGACCCCCCCACGTCCACAGTTGTGTCCATTCCGGAGCCCACTGAATCTGAGCCATGCCCAGAGGGCCAGCTTGATGACACCGACCACTGCCACCCAGGTCTCAATGGCCGCAGGAGCCCCAGGTTAAATggggagagaaggcagagagcaGTGCGTAAGTTCCGCCCTCCTGCTGGTGACACCCTGACCCCTGACATGGCAGGGATGAGGCTCAGGAGGCCAAGGGGCACAGGGCACCACGAAGCCCAGGCTGGGGCTAGAGGCCTGGACTCACCCCAGGGGGAGGGGAACAGTCGCTCTGTCAGCAAGGAGAGAAAGACCCCAGAGGAACGAcaggacaaggagaggagagcctGTAACACGGGAGAGACCAGCCAGCCTTCTGAGACCAGAGAAGCTGAACACAGACAGGGTGACCCTAACCAGGCTGGGGGTCCTGAGCTGCAGAACAGGGAGGAGGGTCCACAGTCAGAACCACCCCCCATTCAGCCATTTCAGGCTGCAGTACCGGAGCGCCCAGAGGGCCAGACAAGAGACAGTGATACTGGTAACAACGCCACCACTCTGAACCAGGATAAGTCCCCTCTGAGCTCCAGTATCTACATAGAGGTGACCAATGTTCAGTCTTCACTAGAGCTCACCCCCATCACAGGTAACAGTAAAGACATGGAGGCGTCCAAGCCTGAGAAAGAAGAGGAGCAGTTGACCAGCCCAGCCAATATTGTCACGCCTGACAGCATGTTCATCTTCAAACCTGGCAACCCGATCCGCCGGGCCTGTCACTATGTGGTGAACCTGCGTTACTTTGAGACATGCATCCTGCTGGTGATCGCTGCCAGCAGTATCGCCCTGGCTGCAGAGGACCCCGTGTCAGCCACCTCTAACTGGAACAAAGTTTTGCGTTACTTTGACTACGTGTTCACAGGTGTCTTTACATTTGAAATGATAATAAAGATGATAGACCAGGGCTTGATTCTCCATGACGGCTCCTATTTCCGGGACCTGTGGAACATTCTAGACTTTATCGTGGTGGTCGGAGCTCTGGTGGCCTTCGCCCTCACGAATGTGTTGGGAAATAATAAAGGACGGGACATCAAAACCATCAAGTCTCTTCGGGTCCTGCGTGTCCTGAGGCCCCTGAAGACCATCAAGAGACTACCGAAACTTAAGgCAGTGTTTGACTGTGTGGTGACCTCTCTGAAGAACGTCTTCAACATCCTCATCGTCTACAAGCTCTTCATGTTCATCTTCGCTGTCATCGCTGTGCAGCTGTTCAAAGGGAAGTTCTTCTACTGCACAGACGGATCCAAAGACACAGAGAAGGACTGCCAAGGCTTCTACATTGACTATGAGAAGGATAAAAAGGAAGTGAAGAGAAGGGATTGGAGGAGACATGACTTCCACTATGACAACATAGTCTGGGccctactcactctgtttactgtCTCCACTGGGGAGGGCTGGCCACAgGTCCTGCAGCACTCTGTGGATgtgacagaggaggacagaggtcCCAGCAGGGGCAACAGGATGGAGATGTCCATATTCTATGTCATCTACTTTGTGGTCTTCCCCTTCTTCTTTGTCAACATCTTTGTGGCtctcatcatcatcaccttccAGGAGCAGGGAGACAAGATGATGGAGGAATGCAGCTTGGAGAAGAACGAGAGGGCTTGCATTGACTTTGCCATAAGTGCCAAACCCCTGACCCGCTACATGCCTCAGAACAGGCAGACGTTCCAGTACCGCCTCTGGCACTTTGTGGTCTCCCCCTCCTTCGAATACACTGTGCTGGCCATGATTGCACTCAACACCATTGTCCTGATGATGAAGTATTACTCTGCCCCACCAGCATACGAGGCTGTGCTGAAACACCTGAACACAGCTTTCACTGTGCTCTTCTCTGTGGAGTGTGTCCTCAAGATCATGGCCTTTGGCTTTCTGAACTACTTTCGAGACACTTGGAATATATTCGACTTCATCACAGTTTTGGGAAGCATCACAGAAATAGTGGTAGACTTGCAGTCAATTGAGACCTTCAACATGGGTTTCCTGAAGCTGTTCCGTGCAGCCAGACTGATCAAGCTGTTGAGGCAGGGTTACACCATCCGCATCCTGCTCTGGACCTTTGTCCAGTCCTTTAAGGCTCTCCCCTACGTTTGTCTGCTCATTGCCATGCTCTTTTTCATATATGCAATCATCGGAATGCAGGTTTTTGGAAACATCAGACTGGATGAGGAGACACACATCAACCAACACAACAACTTCAAGACCTTTTTTGGTGCTCTGATGTTGCTATTCAGGAGTGCCACGGGGGAGTCGTGGCAGGAGATCATGCTGTCATGTTTAGGGGGGCAGAAGTGTGAGCCAGACCCCTTAGCTCTAACATCAGACCACGAGGAGCGCTGTGGAACTGAGTTTGCCTACTTCTACTTTGTCTCCTTCATCTTCTTCAGTTCATTTCTGATGCTGAATCTGTTTGTGGCTGTAATCATGGACAACTTTGAGTACCTCACCCGGGATTCCTCGATATTGGGGCCTCACCACCTGGATGAATTTGTTCGTATCTGGGGTGAATATGACCGAGCTGCTTGCGGGCGTATTCATTACACTGACATGTATGAAATGCTGACCCTCATGTCGCCACCTCTAGGCCTCGGCAAGAAATGTCCATCCAAAGTGGCTTATAAGAGGCTGGTGCTAATGAACATGCCTGTGGATGAAGAGATGTCGGTTCACTTCACCTCCACCCTCATGGCCCTGATCCGAACCGCCCTCGAGGTGAAGATAGCCAGAGGAGGGGAGGACCGAGGTCAGATGGATTCAGATCTACAGAAGGAGATAAGTGTCATTTGGTCACACCTTTCACAGAAGACCCTGGACCTGCTCGTCCCCATCCACAAAGCCAGTCATATGACCATTGGGAAGATCTATGCAGCCATGATGATCATGGACTACTACAAGCAGAGCAAAGCCAAGAAGCTCAGGCAACAGCTGGAGGAGCAGAAACACGCTCCCATGTTCCAGCGTATGGACGCGTCCTCTCTGCCTCAAGAGATCCTCTGCAGTGCCAAAGCCCTCCCTTTCCTGCCCCACAGCCCTGGATCTGCCCTGACCAGAGGAGGATTTGTGGCCTTGAGTCCCATATCCCCTCAGGAGATGTTCATGCAGCCCATGTCCCAGGacctagaggacagagaggaggactaccacaactatcaccaccaccacctgctcCACCACCAGCTCCACACACTGGTTCCGGAGCGCAAAGAGTTTAACCGCAACCTTTGCCCCACTAACAGGCAGGATGCCCCACTCAGGGTGCCCGGGCGGGCAGTCTCTATCCGAGCCTCCTCTATGCCTCGGCTGGCTGTAGACACACAGgtggggacagacagcagcAAATCAATGAAGCGCTCCTTCTCCACTATTGGGGATCAATGTGTGAATGGCCTGTGGCAGGAGGAGTACTCTCTGAAGAGGGTCAGTCCTGACCGTCTGAACAGACCACGACAGAGGAGCATCAGAGgAATCAGGTGCAACCTCAGGGAACCAGTGGATCATGAGCGGGGGCGCTCCAAAGAGAGGCGTCACCTGCTGTCTCCCGACGTGTCCCGCTGCAACTCTGAGGAGCGGAGCCAGGACCCGTCACAAGAACGCAAGCAGTCCCGTTCCCCCAGCGAGGGACGCACACATGCCCTCCACAGACAGGGCAACACTTCAGGCAGCCCAGACCTGTCCAGCACACCCCGCGGCCGGCGCCAACTCCCCCAGACGCCCTTGCGGCCACGCCCTCACATCTCCTACTCCCCCCTGGTGTGCAGAGCCCACCTCTCCCCCCCTGCTGCCAGTGAGGGCAGAGCCCGGACCCAGGAGGCCCCCGGAGAGACGGAGGATCCCTCGTtgcgggaggagggggagaggctaGCCCCAGAGTCAGGAGCGGGGGTGGGGGTGGTAATAGGGGTGGGTGGCccagggttaggggtcagtcaCCCGCACCACTCACCTCACCGGTACATCTCGGAGCCGTACCTGACCCTGCACGAGGAGTTACACAGCCCAGACTCCTCAGGCCTGGATGAGACTCTGACCTTCGAGGCGGCCATTGCAACCAGTCTGGGCCGGGCCAACACCATCAGTTCTGCCCCCCAGCTCAGACACAACTGGCAGGTCCCCAACGGACACTTCCATAAACGCCTGGGTCAGGCCAGCTCTGTGGTTGCCTGCGAGCTCTTGAGTGACACGGACGAGGATGACCGCTGTTAGGGCCGGGACTTGTAGAAGAAGAGCAGGAAGATGGACAGCAAAACTGGGTATCAGAAAGACAGGGGTCCTCAGTTTGAAGCACACTGTCAGGTCGTGTACTGAGTGtgcatctgtatgtgtgtgtatctgcactcttaaaaaaaagggttccaaatgaGTTCTTCAgctggctcccgagtggcgcagcagcctaaggcattgcatctcagtgctagaggcat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU489745 lncRNA downstream 52572 69182924 ~ 69186959 (-) True LOC110524437
TU489772 lncRNA downstream 89705 69147630 ~ 69149826 (-) True G432448
TU489754 lncRNA downstream 185647 69050833 ~ 69053884 (-) True LOC110522990
TU489688 lncRNA downstream 411881 68826974 ~ 68827650 (-) True G432389
TU489659 lncRNA downstream 433211 68806014 ~ 68806320 (-) True G432377
TU491062 lncRNA upstream 118494 69469043 ~ 69469372 (-) True G433669
TU491063 lncRNA upstream 119215 69469764 ~ 69470321 (-) True G433670
TU491074 lncRNA upstream 133788 69484337 ~ 69484789 (-) True G433680
TU491076 lncRNA upstream 135645 69486194 ~ 69486404 (-) True G433682
TU491078 lncRNA upstream 135857 69486406 ~ 69524790 (-) False G433683
XM_036978224.1 mRNA downstream 10862 69198697 ~ 69228669 (-) False si:dkey-21p1.3
XM_036978245.1 mRNA upstream 201254 69551803 ~ 69619075 (-) True LOC110524447
XM_021604088.2 mRNA upstream 354322 69704871 ~ 69714329 (-) False LOC110524449
XM_021604087.2 mRNA upstream 354322 69704871 ~ 69714330 (-) True LOC110524449
XM_021604089.2 mRNA upstream 364733 69715282 ~ 69728407 (-) False LOC110524450
XM_021604090.2 mRNA upstream 364733 69715282 ~ 69728426 (-) True LOC110524450
TU489837 other downstream 233425 69004619 ~ 69006106 (-) True G432513
TU489614 other downstream 484474 68750217 ~ 68755057 (-) True G432338
TU489586 other downstream 532083 68699821 ~ 68707448 (-) True G432310
TU489232 other downstream 886786 68340204 ~ 68352745 (-) True bend5
TU488969 other downstream 1421407 67811486 ~ 67818124 (-) True lrrc7
TU491077 other upstream 172265 69522814 ~ 69524790 (-) True G433683
TU492773 other upstream 1640343 70990892 ~ 70991798 (-) True G435234
TU492700 other upstream 1717476 71068025 ~ 71068887 (-) True G435176
TU492901 other upstream 1878633 71229182 ~ 71230589 (-) True LOC110524478
TU492898 other upstream 1935841 71286390 ~ 71286992 (-) True il23r

Expression Profile