RNA id: XM_036978245.1


Basic Information

Item Value
RNA id XM_036978245.1
length 3143
RNA type mRNA
GC content 0.44
exon number 9
gene id LOC110524447
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 69551803 ~ 69619075 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGGCATCACTCTCTCCATCGTCTTCACCTGATTCTGCCACAGGCTCAGGTACCGACCCAACTCGGCCTGATACAGGAGAGCCTCTCCGCGGAGGATCAGACTCCGACTCAGATCTAGGATTAGGGAAATTCTACTGCGGTGTAGATGACCCGGGTCATCGACTGGAAGGGGAGGAATTTGAACACGAATTTGAGGCAGCGGCAGACCGTCTCCGAGATCTAGTTCAGACGGCTAGTAGGGAACAATTGTTGTACCTGTATGCTAGGTATAAACAGGTAAAGGTTGGAAAGTGCAATACAGCAAAGCCTGGGTTTTTCGATTTTGAAGGTCAAAGAAAATGGACAGCATGGAAGCAGCTTGAGGACATGAGTGCAGAACAGGCCATGCAGGAGTACGTTTCGTGTGTAACTTCACAAGACCCAGACAGCAGTCAGAAGGCATCAGAGAGAAGAGAGCGTAGGACAGGATTTGGACGCCCAGCAGTCAGTTCCCTCTACCAAGAAGAAATGATAAGGGAAGAAGACAGGAACATATTTGACTACTGCAGAGAAAACAACATAGAACACATTACCACGGCTATCAGTTCCAAGAATGTGGATGTCAACGCAAAAGATGAAGAGggccGGAATTTGCTGCACTGGGCCTGTGACAGAGGACACAAAGACCTGGTGTCTGTGTTACTGCAAAACAGTGCTGGCATTAACAGTCAGGATGACGAGGGCCAGACAGCGTTACACTATGCGTCTGCGTGTGAGTTTGCTGACGTAGTGGAACTGCTTCTACAGGCTGGGGCAGACCCTTCCATGAAGGACCAGGAGGGCTCTCTGCCTGAGGAGGTCACTGAATCCAGCTCCATCTCCTCACTGTTGCGCCAGTACACCGCCCCCAAGGGCTAGGCCCAGCTTCGccatcccctcccctccagcCGGTGCCCATCCCATCCTAGACCTAGCATCCAGCTCTCTCAGTAATGGTCATCACACTCTGAAAGTGCAACCCACCACTTCATCATCTCTCATGTCCCATTCCAAGGAATGCATCCATCATCATCGCTATTAAAGAAATTAGTTTCTCTCTGACTTTTTCCGACCACCTCCTTTGATGACACGACAGTCATGTTTGCACTTCGGATTTTGTGTTGTGTTtcctgattattattatttttgaaagACATTTGGATAGCATATGtatattggtaaaaaaaaaataaaaagagataTAACTTCCAAAGAAGTTTACCTATTATTACCTCTCTAGTCTGACTGCTTATTTAGCATTTTAGTTGGTATCATCCTTGCATATATAGATCTGGACAAGAAAATACAAATTCAACCTATATTTGTCCAAAAATAAACTTAGAATATGCAATTTTATATTCAGATGGAGCATGGAGAAATCTAGCTAAAAGTTATTCCATGATAACTAACGTAACCATAGCAGCACACCGATCAAATTGCCTGGCCAGGCCTCTTCATTTGAGGGAACTCTTTGTCCACATCCTGTCTCCCTTGGCCCACCCCACATACCCACACCCTCTATTATGTCACTTAAGATATATTTGGATGTTCTCCAAATAGCCAACACATGGGCTGCCTCCAAATCTGCTTTAGTTTTTCGTAAGCTCTTCTGATCAGAGCAGTCTCTTTGgcaccccctccctcccacctgatGAGAATACTAAATCTGGAATCTCAGCTCTTAACTACAGCTTGATAAAGAAGCTAATGCACATTTGAACAAACAATGGGGACATGCTGTAATCCCTCTCTCTGAACACGAGGCATTAAATAACAGTCACCAAAAAGAGTCCTGCTGCGGCTGACTGCTGTCTGTCACCATGGCCCCAGCATACAGAACAGAGATGGTCCAGCCCAGACAGTCTGCTCTGTTGCAGtatcactgagagagaaagcattgTTATGCATTCCCTACACAACCAGGAATTATGCTGTCGGTATATTTCAAAAGGATGTTTCGCCCATTTTCCAGTAATTTCCTAAATCCTGATCGGGTTGGAGTAGTAGTCGGTGACGGCATGCTCCCCAGGCATGTCTGCACAACTGTGACACTAAGCCCATTATGTTTCCATTATGGGCCTCCATTTTCTCTGAGCTTTTCACTTTTGACACTGCCTCCTCTCAAATCGCAGCCCATATTGCTCAACCTTCTTTACTTAACGTTTGTGCATTTTTACAAGTCGCCTCTCTATGGTTCTCTAACACCATTAGTGACAGATGGCCAAGGTTTGTTACAGAGATGAACTGGAGcactttcctctccctctcttactctcccCAGTCTGGTGGTTAAAAGCAGTGGCATGTCATTGTACTGGCCAATTCTTAATGCAATCCGCTTGCTAGTCCCCAGAACAGTATTGCTTGAAATTCAACAGTAAGCAAAATCTCAGCTCTGCTGTTGAAATGCATCCCTCTAATATCTTCAAGAGGACTCGATAAGTCTCTTGCTGCAAGCCGTGTGTTTAGTGCATGATTAACAAGCATTGCCGTCTGCTGCTACTCAAGGCGATAGTGATCAAAGCTGCTACACAGACACTCAAGTGTCTATATGGTTCTTCTCCTCAGAATGTTCTTATGCAACACCTCAGCAGACACTGAAGGCAATATCCTGTTAacgaccctccctctctctaattaTATTATATGTGCATCTCATTTCTGCTATAATGACCCAGTGAAACAAACCTAATTTCACTTCAAACAGAAGAACAACCTTGAAGTTGTCATTGAAAGGTCTCTCTGTGACTCAAACCCTTTTAAAGCTACACTCTGTCATGGCAGCCATTGCTCAACATTAAAATAAACCATAATTTTAGGAGACAAATATCCTGTCTTGATGTCCAAGATTAAGTTTAGTCTGAACCAAATATCTATTTACATGTTAATGTATTTCTTTCCATCAGAAGGAACACAGAATTGTTACCTTCAGGAAGTTTGTAATAAAAGCCTCAGATCGATGATAATGGcatttgtgcttgtgtttgtcaTCTTTGCAAAAGCAACAGTGCAGGAATTTCCCAGATTTATTTGTATACTAGTGCTGTAAGTGCCGTGTAAATTATCCTAACTGTCTTTGTCGCTGTTTATCTTTGTAAGGCAGCACTATTAAAGGCTATCCATTA

Function

GO:

id name namespace
GO:0005737 cytoplasm cellular_component
GO:0000062 fatty-acyl-CoA binding molecular_function
GO:0008289 lipid binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU491078 lncRNA downstream 27013 69486406 ~ 69524790 (-) False G433683
TU491098 lncRNA downstream 46877 69502514 ~ 69504926 (-) True G433697
TU491083 lncRNA downstream 62045 69489450 ~ 69489758 (-) True G433688
TU491076 lncRNA downstream 65399 69486194 ~ 69486404 (-) True G433682
TU491074 lncRNA downstream 67014 69484337 ~ 69484789 (-) True G433680
TU491147 lncRNA upstream 36934 69656009 ~ 69703291 (-) False G433735
TU491146 lncRNA upstream 79961 69699036 ~ 69703291 (-) True G433735
TU491232 lncRNA upstream 110480 69729555 ~ 69729792 (-) True G433814
TU491236 lncRNA upstream 113880 69732955 ~ 69733165 (-) True G433818
TU491238 lncRNA upstream 117869 69736944 ~ 69737409 (-) True G433820
XM_036978235.1 mRNA downstream 201252 69239531 ~ 69350551 (-) True LOC110524442
XM_036978234.1 mRNA downstream 201253 69239531 ~ 69350550 (-) False LOC110524442
XM_036978237.1 mRNA downstream 201253 69239531 ~ 69350550 (-) False LOC110524442
XM_036978236.1 mRNA downstream 201254 69239531 ~ 69350549 (-) False LOC110524442
XM_036978238.1 mRNA downstream 201254 69239531 ~ 69350549 (-) False LOC110524442
XM_021604088.2 mRNA upstream 85796 69704871 ~ 69714329 (-) False LOC110524449
XM_021604087.2 mRNA upstream 85796 69704871 ~ 69714330 (-) True LOC110524449
XM_021604089.2 mRNA upstream 96207 69715282 ~ 69728407 (-) False LOC110524450
XM_021604090.2 mRNA upstream 96207 69715282 ~ 69728426 (-) True LOC110524450
XM_021604092.2 mRNA upstream 119288 69738363 ~ 69742378 (-) False LOC110524451
TU491077 other downstream 27013 69522814 ~ 69524790 (-) True G433683
TU489837 other downstream 545697 69004619 ~ 69006106 (-) True G432513
TU489614 other downstream 796746 68750217 ~ 68755057 (-) True G432338
TU489586 other downstream 844355 68699821 ~ 68707448 (-) True G432310
TU489232 other downstream 1199058 68340204 ~ 68352745 (-) True bend5
TU492773 other upstream 1371817 70990892 ~ 70991798 (-) True G435234
TU492700 other upstream 1448950 71068025 ~ 71068887 (-) True G435176
TU492901 other upstream 1610107 71229182 ~ 71230589 (-) True LOC110524478
TU492898 other upstream 1667315 71286390 ~ 71286992 (-) True il23r
TU493828 other upstream 2421887 72040962 ~ 72121697 (-) True G436172

Expression Profile