RNA id: XM_021604090.2


Basic Information

Item Value
RNA id XM_021604090.2
length 2435
RNA type mRNA
GC content 0.48
exon number 20
gene id LOC110524450
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 69715282 ~ 69728426 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gttttgcaacagaatcggcgtaATGTTGTAGAACGTTTGACGTACTATTTGTCCTGTTTCAGAACGTAAGCAAACGTCCCCGGATATGCTGCAGAGCGGGAAATTGAACGGGCGGAAAAATAACAAGCGCCCAACTGAGCAAAGATGGGAGACAGGACCCTGCTGCGGGAGCTAAAGCGGTGGGCGATTGAAGAATTTAATCTACCAACCCAAAGTCTCCCAAACGACAACTACTTTAAAACGTTGTGTGTTGGCCCGGGTGCCTCTATATGGAGATATGTCACACAACATATTTTCAATCAGAGGAATGTAAGGGTTATGCGTGGAAATCTCAGATGGTACAAAGTTCTGCACGATAAGGAGTTGAAACAAGTAGTGGGGCAGAGTGATGCTGCTAAGCGGTTTGAGCTTCAAGAGCAGATAGATGAGCTGAGAGTGGAACTAAACCACCTGGACTCTCAAATCAATGGGACTGAAGCACAGCTGGTTACTGAGGAGGAGTCCATTAACCGGAGCTGGGAGATGGTGGAGGAGAACCAATGCAGGGAGCTGCTTTTACAGGCTTTTAAGCAGCGCTGCATGAAGGAGCGCCACTCTCTTTCAGAGGATATCCTCAAGATCAGTGGGCACTCCCAGGTTCTGGAGCAGCTGTCTAGGAGGGCAGAGGTGAAGGTGCTGTTTGGAAATGAAACCTCCAATAGCAGTGGGGACCATCTCAACCCATCAGGAGCAGAGCCTAAGGTTCTGCGTAGCGTCCGAGAGTTGTGTGATGAAAGACTCCAGTTCTTTCAGTCTTTGCAAGAGAGTGAACTGAACATGACATCTTCCACTGCCACACActTGACACGTGAACAGAGAACTGCAGTATTTCAGCATTGGTTAAGTGCTGTGGAGGACTTGTTGCAATGCTATCCTCCGAACCAAGTGCTGTCAGCCTTGCAGTACCTGGCCTTGGGACAGGAAATGACATTGGAGGAGAGGCTTGCCTCTTTGGGTATGGCTCGTGATGTTGCTGCATTACgGTTTCGCTACGAGAGTAATCACCTGCTGGACATCTCAAAAGAAGAGGAAGAGCTACCAACCGTTAAGAGTCTTTTACAGTCAGCTTGGGAGGAGGTGGAACAGAGTCTGATGGAACTGGCTCAGACACGGTCACGAATTCAACAGCTCCAGACCCAGCTTCATACCCGAAAGAAAGAGGCACATTTAGAGCTGATTGGCGGGGAATCTCAAACCGACGCCCTGTCACTGTCAGTGTTTAAGCTGGAGATGCAGTGTGTGATTCAGGCAGCAGTGAGAAATGGTTTGCGGGACCAGTGTGTTCAAATGGAGCAGCATGCCAGCGACCGACAGGAGGACCTCCGCAACCTACGGAGCCAATGGCAAAACATCATGGACTTCAGACAGCTTGGGGATGTCAGGCAGGAACAGATAAGCGGTCTGATCAAGGGGAACTCAACAGCTAAGACTGAACTGACTCGTGTGCACAAGGAGATTGGACAGTTTGTTCAGGGAAAGCTGGTTCCCCAATTTGCTAATGTTCTTTCAGCAGCCAATAGGCTTCGCAACTCTGTGTCCCAAGAGGCCCGACAGTTTGGGAACGTGTCACTGTTGACACTTGACCGCAGGATCATTGAAGGCGAGCAGAGAATTCCAGCATCGTGGTTGTCTATCCATCGCTTGCATTCCTTGCCCTTCCACAATCTGTGTCAAAGCCTGGCTTTCCCAATGTATCGAGCCCCTGAGGAACTGTACACCCAAGCTCTATCCCAGCATCTGGAGCTTCGATTTCTGCGTCGTTTGCTGCAATTGCACTCCTCCTCTTTAACAAATGTAGAGAAGCAGGGAGCGCTGCTTCCTGCACCTGACCAACAAGGCCTCCTGCTACGTGTCCTGGAGGAAGACAAGGAGCTGCTTAAGTCTTTATTGCCCAAGGTTCGGGAGCTTACCCAGCGCTGCTCACAGGGCCTTTCTTATGGGTATCAGGTCAAGATTGCCATTTCCCATTGGTGGGATCAGCCTGCTCAGTTTGCTCTGCCTGACATACGCAAGGGGGGACTGACTTTTCAGCAGTGGCTACAGAGGTGGAAATTTGCAGCTAAGGCTTCTTGATGAGCTTCCTAGAAAATAAAGACAAGACTGAAGTGCATAGATACCCAGCAAACAGGatgtccaggggaccatgacacaacctTCCGAAGTTCTGGGGACATCCTTACGACTAATTTCTGTTTGCAGGGTATGCACCAAGGTGAATTTTAGAGAACAATACTGTTCTTTGTAGTACTAAAACAAAATTTTTATTCCTACTGACATTAATTTACAATATTGTTTGTTTCTCATCTTCTTTTTGCTAAACATGATGCCATTCAATTTGTATCGCATGTACATTTCCATTGTCTTTATGCCATTAAATTAACTTTGCCTGCACCTTA

Function

GO:

id name namespace
GO:0051225 spindle assembly biological_process
GO:0070652 HAUS complex cellular_component

KEGG:

id description
K16588 HAUS5; HAUS augmin-like complex subunit 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU491147 lncRNA downstream 11991 69656009 ~ 69703291 (-) False G433735
TU491146 lncRNA downstream 11991 69699036 ~ 69703291 (-) True G433735
TU491134 lncRNA downstream 158791 69555019 ~ 69556491 (-) True G433725
TU491098 lncRNA downstream 210356 69502514 ~ 69504926 (-) True G433697
TU491083 lncRNA downstream 225524 69489450 ~ 69489758 (-) True G433688
TU491232 lncRNA upstream 1129 69729555 ~ 69729792 (-) True G433814
TU491236 lncRNA upstream 4529 69732955 ~ 69733165 (-) True G433818
TU491238 lncRNA upstream 8518 69736944 ~ 69737409 (-) True G433820
TU491318 lncRNA upstream 138907 69867333 ~ 69886159 (-) True G433889
TU491353 lncRNA upstream 169503 69897929 ~ 69899326 (-) True G433918
XM_021604087.2 mRNA downstream 952 69704871 ~ 69714330 (-) True LOC110524449
XM_021604088.2 mRNA downstream 953 69704871 ~ 69714329 (-) False LOC110524449
XM_036978245.1 mRNA downstream 96207 69551803 ~ 69619075 (-) True LOC110524447
XM_036978235.1 mRNA downstream 364731 69239531 ~ 69350551 (-) True LOC110524442
XM_036978237.1 mRNA downstream 364732 69239531 ~ 69350550 (-) False LOC110524442
XM_021604092.2 mRNA upstream 9937 69738363 ~ 69742378 (-) False LOC110524451
XM_036978248.1 mRNA upstream 9937 69738363 ~ 69742378 (-) False LOC110524451
XM_036978247.1 mRNA upstream 9937 69738363 ~ 69742403 (-) False LOC110524451
XM_036978249.1 mRNA upstream 9937 69738363 ~ 69742403 (-) False LOC110524451
XM_021604091.2 mRNA upstream 9937 69738363 ~ 69743354 (-) True LOC110524451
TU491077 other downstream 190492 69522814 ~ 69524790 (-) True G433683
TU489837 other downstream 709176 69004619 ~ 69006106 (-) True G432513
TU489614 other downstream 960225 68750217 ~ 68755057 (-) True G432338
TU489586 other downstream 1007834 68699821 ~ 68707448 (-) True G432310
TU489232 other downstream 1362537 68340204 ~ 68352745 (-) True bend5
TU492773 other upstream 1262466 70990892 ~ 70991798 (-) True G435234
TU492700 other upstream 1339599 71068025 ~ 71068887 (-) True G435176
TU492901 other upstream 1500756 71229182 ~ 71230589 (-) True LOC110524478
TU492898 other upstream 1557964 71286390 ~ 71286992 (-) True il23r
TU493828 other upstream 2312536 72040962 ~ 72121697 (-) True G436172

Expression Profile