RNA id: XM_036978248.1


Basic Information

Item Value
RNA id XM_036978248.1
length 2546
RNA type mRNA
GC content 0.44
exon number 14
gene id LOC110524451
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 69738363 ~ 69743354 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AACATTTTATGCTAGCCAGCTAACAAGCTAGCACACATAATTTTTACTTCTTTCATTCTACATTATTGCTCTTCAGTTGCTCGTGAataagataaaaaatatatactggtGTGTCCTGACACCTGCACTCGATTTAAAAATATTTACTTCCGTGTCCAAGGCAATGTGTTTGGTATTTGGTAGCTTATCAGAGTTAGCTTAGTTTGCTAACGTTACCAAGCAGACGGGAAGGCTCCCTGTCTATTCTTCCGGACTTTAGtgaagttagctagctatctggTTTAGTGAAATGTCATCGACGTAGACTGAACCCTCGTTTCTTTGGTGGTGTTGTTTCTGTtaacttgATCCAGCCAGCGAGGCACTACCACTACTATGGACCAAGAGTATCAGCGTCGCCTGCTTCGGCAGATCAACATTCAGAACGAAAACACCAGCCCCATTAAGGTGACCGAGGTGATGCGAAACCTGACGCCCAACAACTCCCCGATGTCCTCTCCCAGCAAGCATGGTGACAGGTTCATCCCATCCCGTGCAGGGGCCAACTGGAACATCAATTTCCACAGAATCAATGAGAATGAGAAATCACCAAGTCCAAATAGAAAAACAAAGGATGTGACATCTGATAGCAGCAAAGCAGATGGGCTGGCCTACTCGGCTTTGCTGAAAAATGAGCTGCTCGGAGCAGGCATTGACAAAGTTCAGGACCCCCAGACAGAGGACAGACGGTTACAGCCATCCACGCCGGAAAAGAGGAGTCTCTTCAGTTACTCACTCAGTGCTAGGAGCACAACAGATGAGGACAATGGCATCTCTCCCTACTCATTGTCACCTGTCAGTAGCAAAAGTCAGAAGTTGCTACGGTCACCCAGGAAGCAGACTCGTAAAATCTCAAAGATCCCATTCAAGGTCTTGGATGCTCCAGAACTACAGGATGACTTCTACCTCAACCTTGTGGACTGGTCTGCTTTAAATGTGCTGAGTGTTGGCTTAGGCACATGCGTCTATCTCTGGAGTGCCTGCACCAGCCAGGTAACTCGTCTGTGTGACTTATCAGTGGAGGGAAATTCTGTTACATCCGTGGGCTGGTCAGAGAGAGGCAATCATGTGGCGGTGGGGACTCACAAAGGCTACGTACAGATCTGGGATGCAGCAGCTGGCAAAAAGCTCTTTACACTAGAGGGTCACACTGCTAGAGTTGGTGCACTGGCATGGAACGCAGACCAGTTGTCATCAGGTAGTCGAGACCGTATGATCCTGCAGAGGGACATTCGCACACCACCTCTCCAGTCTGACCGTCAGTTGCAGGGTCACCGGCAGGAAGTATGTGGTCTGAAGTGGAGTACAGACCACCAGCTGCTTGCCTCTGGGGGCAACGACAATAAGCTGCTTGTGTGGAACCACTCTAGTACGGTACCAATGCAGCAGTACACGGATCACCTAGCTGCAGTCAAAGCCATCGCCTGGTCCCCCCACCAGCACGGGCTGCTGGCGTCTGGTGGAGGAACGGCTGACCGCTGCATTCGCTTCTGGAACACGCTCACCGCACAGCCACTGCAGTGCATGGACACAGGCTCGCAGGTCTGCAACCTGGCATGGTCGAAACATGCCAATGAACTGGTCAGCACACATGGTTACTCTCAGAATCAGATCCTGGTGTGGAAATATCCTGCACTCAGTCAAGTAGCCAAGCTTACCGGACACTCATACAGGGTACTCTATCTGGCAATGTCTCCTGATGGTGAGGCCATTGTCACAGGGGCTGGTGATGAAACGCTACGCTTCTGGAATCTCTTTAGTAAAACACGGTCAACAAAGGAATCGGTGTCCGTTTTAAACCTCTTTACCAGGATAAGATAACAGCAAGAATAGACTTGATGGAGTGCCTTGAATTCATTACAACATTCATCAACACAATTCAAAAGAATGACCTAACATGGACATGACATATTGTCATGGAGGAGGAAAGAACTGTTTTACTTTGCCCAGAAACAGAAAATAATTTGTCCTCAAtgtttttattagatttttttctatTCATGTACGCTTCAATATACAGTTATGCTTTTTCTATGTTGATTTTTGTATTCCATGTCTATGTTGAAAGTATGTGTTAAAGGAGCCTTAAAGTACAATGTAGAGAAATGGATCTACAATTTtagttgttgatttttttttttgccatttgaAATTCTATATTTGAATGTTATATAGACTGGGGCAAATTGTATAATATAATGGGACAATCATGGCAATCCATGGCAGTTGTTTTAAGAAAAACAATTAACTTTTGGAATAAAAAAAATAGCCACTAAATGTGTCAAAGCACTACATTGAATATAGTAGGGTGGAGTAAACAAAACTGAGTAAAATGTGATGTTAAATCGCTGGAACTCAATAACAAGAGTATTGCAAAAGAAATGTCTGGTGTTTTCTTAgactttactgagttatagttcatataaggaaattagctaaataaataaattagatccTAAtgaatggatttcacatgactgggaataaagaaTTGCATCTCTTGGTCa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU491238 lncRNA downstream 954 69736944 ~ 69737409 (-) True G433820
TU491236 lncRNA downstream 5198 69732955 ~ 69733165 (-) True G433818
TU491232 lncRNA downstream 8571 69729555 ~ 69729792 (-) True G433814
TU491147 lncRNA downstream 35072 69656009 ~ 69703291 (-) False G433735
TU491318 lncRNA upstream 124955 69867333 ~ 69886159 (-) True G433889
TU491353 lncRNA upstream 155551 69897929 ~ 69899326 (-) True G433918
TU491376 lncRNA upstream 182283 69924661 ~ 69924861 (-) True G433938
TU491378 lncRNA upstream 184766 69927144 ~ 69991777 (-) True G433940
TU491389 lncRNA upstream 197216 69939594 ~ 69965405 (-) True G433950
XM_021604090.2 mRNA downstream 9937 69715282 ~ 69728426 (-) True LOC110524450
XM_021604089.2 mRNA downstream 9956 69715282 ~ 69728407 (-) False LOC110524450
XM_021604087.2 mRNA downstream 24033 69704871 ~ 69714330 (-) True LOC110524449
XM_021604088.2 mRNA downstream 24034 69704871 ~ 69714329 (-) False LOC110524449
XM_036978245.1 mRNA downstream 119288 69551803 ~ 69619075 (-) True LOC110524447
XM_021604098.2 mRNA upstream 2208 69744586 ~ 69750880 (-) False LOC110524454
XM_021604096.2 mRNA upstream 2208 69744586 ~ 69751446 (-) False LOC110524454
XM_021604097.2 mRNA upstream 2208 69744586 ~ 69751448 (-) True LOC110524454
XM_036978256.1 mRNA upstream 82932 69825310 ~ 69833853 (-) False LOC110524457
XM_021604111.2 mRNA upstream 82932 69825310 ~ 69834151 (-) True LOC110524457
TU491077 other downstream 213573 69522814 ~ 69524790 (-) True G433683
TU489837 other downstream 732257 69004619 ~ 69006106 (-) True G432513
TU489614 other downstream 983306 68750217 ~ 68755057 (-) True G432338
TU489586 other downstream 1030915 68699821 ~ 68707448 (-) True G432310
TU489232 other downstream 1385618 68340204 ~ 68352745 (-) True bend5
TU492773 other upstream 1248514 70990892 ~ 70991798 (-) True G435234
TU492700 other upstream 1325647 71068025 ~ 71068887 (-) True G435176
TU492901 other upstream 1486804 71229182 ~ 71230589 (-) True LOC110524478
TU492898 other upstream 1544012 71286390 ~ 71286992 (-) True il23r
TU493828 other upstream 2298584 72040962 ~ 72121697 (-) True G436172

Expression Profile