RNA id: XM_021604097.2


Basic Information

Item Value
RNA id XM_021604097.2
length 1522
RNA type mRNA
GC content 0.45
exon number 11
gene id LOC110524454
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 69744586 ~ 69751448 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cattggctgtgttgtaaaaaaaatataaaaagaaaataaaaatgatttttgATCTTAATGTAATGTTAGGCATAATGTTAGCCGttcggttaaggttagggttacgtcTAGGGTCtgattttaagaagatacattttagaaataggcggggttttaGACATAATTCTAATTTTGTGGCcatggtaactagtgacaaccgtCAGGGCGGGAAATCAACCACACATGTCAACAGATTACACATTCCGAATGTCAACGCATTTTAACTAACTAGCTTCATATTCTTAATTATTTTAAACGGTGTAAGTTAACTTTAAAGTCTGGTTTCAATCAACTTTGGAGCCATGCAGGCGTTTTTGAAAGGAACATCAACTCAAGCCACCAGACCTCTGAAAGAGAAAGGTACAGGGACCAGTGGAGAGAAGAAGCAGAAATCTGTCCCCTGGGTAGAGAAATATAGACCAAAATGTATGGAAGACGTGGTGTTTCAAGAGGAGGTGGTTGCTGTGCTGAAGAAGACTATAGAGGGCGCTGATCTCCCCAATCTGCTGTTCTATGGACCACCTGGAACAGGAAAGACCTCCACCATCCTGGCTGCAGCCAGGGAACTTTATGGGCCAGAGCTGTACCGACAGAGAGTGCTGGAGCTGAACGCCTCCGATGAGAGAGGGATTCAGGTGGTGAGAGAGAAAGTCAAGAGATTTGCCCAGCTGACTGTAGCAGGCCACCGCACTGATGGGAAACCATGCCCACCCTTTAAGATCATCATCCTGGATGAGGCTGACTCAATGACCAATGCTGCTCAGGCTGCTCTCAGACGAACCATGGAGAAGGAGTCCCGGACCACCCGCTTCTGTCTCATCTGCAACTACGTCAGCAGGATTATTGAGCCCTTGACATCCAGATGCTCCAAATTCCGCTTCAAACCTCTAGCAAATCAGGTCCAAGAAGAGCGCCTGCTGGATATCTGTGACAAGGAGAATCTCAAGTACTCAAAGGAGGGTATTGCAGCGTTGGTGAAGGTTTCAGAAGGGGATCTTAGAAAAGCCATAACCTTTCTTCAAAGTGCTGCACGGCTGAACACAGATAATGAGATCACGGAGAGTGCGGTCATAGAGATAGCTGGGGTTGTTCCTCCCAAGATGATTGACAATTTGCTCAAAATCTGTTACAAGGGAACATTTGAAAAACTAGAGATTGCTGTTCGGAACATGGTAGATGAGGGCTATGCTGCCACACAGATCATCAACCAGCTACACGAAGCCATCATAGAGGAAGAGCTGAATGACAAGCAGAAGTCTGCCATCACAGAAAAGATGGCAGTGGTCGACAAGTGTTTAGTGGATGGTGCAGATGAGTACCTGCAGATGCTGAGTATGTGTTCTGTGATCATGCAGCAAGCCACTCTGAGTAACTGACTCCACAACCTCATGGATCATTCCTCTCCATATGCATATAGACCAACAGCTTTTTCTATACATTTTTGTAGGTTGACTGTATTAAAATGTCAATTGTTTCCTGTAAA

Function

GO:

id name namespace
GO:0006260 DNA replication biological_process
GO:0005524 ATP binding molecular_function
GO:0017111 nucleoside-triphosphatase activity molecular_function
GO:0003677 DNA binding molecular_function

KEGG:

id description
K10755 RFC2_4; replication factor C subunit 2/4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU491238 lncRNA downstream 7177 69736944 ~ 69737409 (-) True G433820
TU491236 lncRNA downstream 11421 69732955 ~ 69733165 (-) True G433818
TU491232 lncRNA downstream 14794 69729555 ~ 69729792 (-) True G433814
TU491147 lncRNA downstream 41295 69656009 ~ 69703291 (-) False G433735
TU491318 lncRNA upstream 115885 69867333 ~ 69886159 (-) True G433889
TU491353 lncRNA upstream 146481 69897929 ~ 69899326 (-) True G433918
TU491376 lncRNA upstream 173213 69924661 ~ 69924861 (-) True G433938
TU491378 lncRNA upstream 175696 69927144 ~ 69991777 (-) True G433940
TU491389 lncRNA upstream 188146 69939594 ~ 69965405 (-) True G433950
XM_021604091.2 mRNA downstream 1232 69738363 ~ 69743354 (-) True LOC110524451
XM_036978247.1 mRNA downstream 2183 69738363 ~ 69742403 (-) False LOC110524451
XM_036978249.1 mRNA downstream 2183 69738363 ~ 69742403 (-) False LOC110524451
XM_021604092.2 mRNA downstream 2208 69738363 ~ 69742378 (-) False LOC110524451
XM_036978256.1 mRNA upstream 73862 69825310 ~ 69833853 (-) False LOC110524457
XM_021604111.2 mRNA upstream 73862 69825310 ~ 69834151 (-) True LOC110524457
XR_002473388.2 mRNA upstream 168709 69920157 ~ 69921094 (-) True LOC110522884
XM_036979053.1 mRNA upstream 198756 69950204 ~ 70004717 (-) False LOC110524459
XM_036978258.1 mRNA upstream 1085367 70836815 ~ 70870377 (-) False LOC110524463
TU491077 other downstream 219796 69522814 ~ 69524790 (-) True G433683
TU489837 other downstream 738480 69004619 ~ 69006106 (-) True G432513
TU489614 other downstream 989529 68750217 ~ 68755057 (-) True G432338
TU489586 other downstream 1037138 68699821 ~ 68707448 (-) True G432310
TU489232 other downstream 1391841 68340204 ~ 68352745 (-) True bend5
TU492773 other upstream 1239444 70990892 ~ 70991798 (-) True G435234
TU492700 other upstream 1316577 71068025 ~ 71068887 (-) True G435176
TU492901 other upstream 1477734 71229182 ~ 71230589 (-) True LOC110524478
TU492898 other upstream 1534942 71286390 ~ 71286992 (-) True il23r
TU493828 other upstream 2289514 72040962 ~ 72121697 (-) True G436172

Expression Profile