RNA id: XM_036978256.1


Basic Information

Item Value
RNA id XM_036978256.1
length 3213
RNA type mRNA
GC content 0.46
exon number 2
gene id LOC110524457
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 69825310 ~ 69834151 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTTAGGGTGCTCAAAGCAAGAGTTCACACTGCTTTTACAGTTAGCCTGTGGGGAGATGTCCATTAACGGTAGAATCATCGctgggatgaggaggaagagggggggtggGGCAATCCCCTTTCATGGAATTGGAACCTAACCTCTCTTGACCTTATGATGTGGGTCGCTCTTTGACCGGACTGTGTGGACAGGGGTAGCAAAACAGTGATGACTCAGAGAGCGGAGGAGATTAAATTGAACGAAATACCAACATTTCTCAAAGGAGCCCATGTCTCCAGTTGGGTCAATATGATGGAACTCATGCACTCCCAAATCATTTGGAATAATTGTGAAAGTAGAAGCCTCTCAAAGGCAACTACCTATTGGACTTGACAAAAAGACGGGGTGAGGGCAGGAAGGTTCGCAGAATGTTTATGAATTTCAGAAGGATCAGAAGATGTCAATGTGTGCAGCTGGTGACAACAGGCTTTGTCCTGTCTGTGTTGATGGTGTGCTGGGTGCAGCTGGACCACCATGTGGAGAACCGTTACTTGGTCAACAGCTTTGACTTCATCAACAAGAGCTTTGGCATCAGCCAGCAGGAGTCGGAAAGCCTGAGCAACTTCCTGTACCTCATCAACCACCATGACAAGTGTAACAGCAATgaagtgctgctgctgctgtttgtCAAATCTTCCCCAGAGAACCTAGAGAGGAGGCAGGCCATCCGGGCCACCTGGGGGAATGAGAACTACATCCAAAGGGAGCTGGGGGCCAACGTGAGGGTGCTGTTTGCCCTGGGGGTCTACTCCAACCCCCAGCAGAGGGGCAGTGTGCAGAGAGAGTTGCTGGGGGAGGACCAGGTCTATGGGGACCTGGTCCAGCAGGACTTTGTGGACACCTTTCACAACCTCACCATCAAACTGCTGCTGCAGTTCCGCTGGAGACACACCTACTGCAACAAAGCACGCTTCCTCATGTCAGCCGATGACGACATCTTTGTCCACATGCCCAACCTGGTGCACTACCTGCAGGGCCTGATCCAGCAGGGGGCCCGGGACATCTGGGTGGGCCACGTGCACAGGGGAGCCCCCCCTATCCGCCAGAAGGAGAGCAAGTACCACGTGCCTTATGAGATGTACCAGTGGCCCTCCTACCCAGACTACACCGCGGGGGCAGGGTACGTAGTCTCAAGGGACGTGGCTGCCAAAATCTACCAGGCAACTCTGTTCCTCAATGCCTCGCTGTACATTGACGATGTGTTCATGGGCATCTGTGCCAACGCCATGGGGGTGTCTCCTCAGGAACATGTTTACTTTTCAGGGGAAGGGAAGGCCCCCTATCACCCCTGCATCTATGATAAGATGATCACCTCTCACGGACATGTGGCAGACGTCCGGCACCTGTGGAAGGCAACTATGGACCCACAGATTCATGACATTTCCTCTGGCCAGGTGGGAAAGCTGTACTGCACAGCAGTGAAAATCATGCTCCTCTGTAAACCTTACTATTTAAATACCTACCCATGCAAGGCAGCCTTTTCATAGTGTACTGTTAGGCTGCACAGAATGTCACTGCAGTCTTTTTCATTTATATTTCAGTGTCTGCAGCTGGTATCATCTTCAAAATAAAGACCAAAGCCATGTTCTTGACCATATATTCACCACACCTGCCTTGGCTTGATGGATACTGCAGTTGTACTTTGTGGTTCAGCTAATTGTGTGAGGTAAACAGACGTTACAGAGCTAATGTTCTTGGCTGCAGTCAATAAGTCAAAAGTGAAAAATCCTTCAAATTAAATTTTGCTAGCAGACAGTGTTTTTATTGAGTTACCATTGCTCATTATCTGTATCATACACATTTTATAATCCCTCTTCTCTCAATAGAGCTAACTCCATTTCTTCCCCCATTCCCCTGTTTCACTTCTCCTAAAATGTCAGGCTGCAAACCAGGAGCAGACACTGGCATTTCCCAAAACAATCTGCTTCAAACCACATCCTGCTCACTAAATCATTCCATATGAACTCTGCTCCCCCATCTCTCCCGTCTTTGTCTGGGTCCCCCAAAAAGGCAACATGCAGTATTTAGTGACACTGCAGACAGGAATTCACTGGCACCGGAGGGAGGAGTGAAGCTAGATTTCGATTCAGTATGGATCTCTAGGGGCCCTAGCCTACAGTACCATGCATCAGGGACTTAGGGCAAATACACAGTGGTTCTCCATTGTGGTTGAATGAAAAATGCAGAATGTGACGAAATCCACTGTGGGATGGAAAAACTCAATCTCTCAACCTTATATGGAATTAATTTACTTCTTGCAGTTTTATCCGGTACTACTTTATGCTTTAAGAGATTCTGCCAGTGATGGGAAATCAAAATCAACCAGGATGTTGCTATTCATGTGTTTTTGAAATCTATTGTGTACAAAAAAAGCCCCCTTGTGCAAAAATACCCAGAACTGTTACGGGACATTTTAGCATATCAggtgacatacagtatgtacagtagctGTTGTATGTTTCAAATACACATTACCTACATTGATGCCTGTGCTTATCAGAAGAGGGGAATGCAAGTGTCATTCACTTCCTGTGTCAGATGAGTCAGAGATTGAACTGCCTATTGCATCTGTACAATTTAACAAACCCCTAACAGTTACAGTAAAGACGTTGCAAATAATGTTTTCAAAATTCGCAATAAAAGGACGAGTATGTTCCATATCAGGAGGCATTGTGCAGGCTGATATTAGAACAGGAGACATTCCACAAGCAGGTGTGTGGTCACCTGGTGCTAACAGTCAGCTGGGAGGCTCTGCCTTAAGTCTCTCTTCATCTCTACAAATCCTCTCTTCAGAcagctatagtgtgtgtgtgctatgctCTCCTAAACTCTCCTTTCAATTGTCACTTTCTGTCTGTGACTTCTCTCAAAGTGCCTTAAAACAAGCTAATGGTTGAGGAAATTGACCTTCACCCATAGGAGAAAAAAGCTGTGCCAAAGGGAACTTTCTTGGATTCATACACTGGGTACCTTACATCCAGCAGGGCTTAATGATGATTTTGACATGTGGGTCATGTTTCAATCTGAGTTCCACGATCCCTGGCTATGTGGTTATTGTAATTTATGACAGTTCTTTAATCCGTTACCCccttactatactgaacaaaaacaaacgcaatatgtaaagtgttggtcccatgtttcatgagctgaaataaaatatctccAACATTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU491238 lncRNA downstream 87901 69736944 ~ 69737409 (-) True G433820
TU491236 lncRNA downstream 92145 69732955 ~ 69733165 (-) True G433818
TU491232 lncRNA downstream 95518 69729555 ~ 69729792 (-) True G433814
TU491147 lncRNA downstream 122019 69656009 ~ 69703291 (-) False G433735
TU491318 lncRNA upstream 33480 69867333 ~ 69886159 (-) True G433889
TU491353 lncRNA upstream 64076 69897929 ~ 69899326 (-) True G433918
TU491376 lncRNA upstream 90808 69924661 ~ 69924861 (-) True G433938
TU491378 lncRNA upstream 93291 69927144 ~ 69991777 (-) True G433940
TU491389 lncRNA upstream 105741 69939594 ~ 69965405 (-) True G433950
XM_021604097.2 mRNA downstream 73862 69744586 ~ 69751448 (-) True LOC110524454
XM_021604096.2 mRNA downstream 73864 69744586 ~ 69751446 (-) False LOC110524454
XM_021604098.2 mRNA downstream 74430 69744586 ~ 69750880 (-) False LOC110524454
XM_021604091.2 mRNA downstream 81956 69738363 ~ 69743354 (-) True LOC110524451
XM_036978247.1 mRNA downstream 82907 69738363 ~ 69742403 (-) False LOC110524451
XR_002473388.2 mRNA upstream 86304 69920157 ~ 69921094 (-) True LOC110522884
XM_036979053.1 mRNA upstream 116351 69950204 ~ 70004717 (-) False LOC110524459
XM_036978258.1 mRNA upstream 1002962 70836815 ~ 70870377 (-) False LOC110524463
XM_021604131.2 mRNA upstream 1002962 70836815 ~ 70870378 (-) False LOC110524463
XM_021604127.2 mRNA upstream 1002962 70836815 ~ 70870397 (-) False LOC110524463
TU491077 other downstream 300520 69522814 ~ 69524790 (-) True G433683
TU489837 other downstream 819204 69004619 ~ 69006106 (-) True G432513
TU489614 other downstream 1070253 68750217 ~ 68755057 (-) True G432338
TU489586 other downstream 1117862 68699821 ~ 68707448 (-) True G432310
TU489232 other downstream 1472565 68340204 ~ 68352745 (-) True bend5
TU492773 other upstream 1157039 70990892 ~ 70991798 (-) True G435234
TU492700 other upstream 1234172 71068025 ~ 71068887 (-) True G435176
TU492901 other upstream 1395329 71229182 ~ 71230589 (-) True LOC110524478
TU492898 other upstream 1452537 71286390 ~ 71286992 (-) True il23r
TU493828 other upstream 2207109 72040962 ~ 72121697 (-) True G436172

Expression Profile